ENST00000546353.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000546353.1

Source

Gencode19

Same with

lnc-LRMP-2:1,NONHSAT027335

Classification

antisense

Length

728 nt

Genomic location

chr12+:25102097..25113092

Exon number

4

Exons

25102097..25102264,25110061..25110174,25110868..25111208,25112988..25113092

Genome context

Sequence
000001 AAGGCTGCTC CCCCAGGCCG CCCCCAGATG GTGGAGTCTC TCCCAGCCCG AAGATTCGGA GCCAGCGCCC AGACCCGAGC 000080
000081 CTCACTCACT GCTCACTCCC GGGGTGCAGG GCAGAGGTGC CAGTGTTGCA AGCAAATGAC ACGGTTACCC CCGAATCAGC 000160
000161 CACTGTGGAG TTTTGCTCTT TTTGCCCAGG CTGCAATGGC GTGATCTTGG CTCACCGCAA CCTCCGCCTC CCGGATTCAA 000240
000241 GCGATTCTCC TGCCTCAGCC TCCCAAGTAG CTGGAATTAC AGATAAATGT TTCAGAATGC TGCCACCAAC CATCCTGCAA 000320
000321 CCATGAGTGG CAAGCCCAAG ACCAAAAACC AAATATTGAG GATGGCAAAG AAAAAAGAAA GAGACTGGAC TGTTGGGGAC 000400
000401 ATCACTGAGC CACTTTGCCA AACCTGGAGT TGCCTACCTT CAAAAGTTTT GTTATATGAC ATAATTAATC TTTACTGCTT 000480
000481 TGCCACTTCT GGTGGAATAT TTTATTACTA TCACCAGAAG CATTTCTTGG CTTCAATAAC ACACATACTC CAGTGTCACC 000560
000561 TGCTTCAAGA GCACTCTACT CATAATTCTG ACTAATGTAC ATTTCCACAT GTCTGACCCA AAGGAGGAAG AGGCAGAGCA 000640
000641 AGACGGCTCA ATAGAAGCCT CCACTAATTG TCCTCCCCAC TGGAACACCA AATTGAACAA CTATCCACAC AAAGAAGCAC 000720
000721 CTTCGTAA
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Predicted Small Protein

Name ENST00000546353.1_smProtein_608:727
Length 40
Molecular weight 4382.6244
Aromaticity 0.0512820512821
Instability index 81.341025641
Isoelectric point 4.58331298828
Runs 5
Runs residual 0.0405354449472
Runs probability 0.0343402225756
Amino acid sequence MSDPKEEEAEQDGSIEASTNCPPHWNTKLNNYPHKEAPS
Secondary structure LLLHHHHHHLLLLLEEELLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -