Difference between revisions of "ENST00000547786.1"

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sequence = <dnaseq>GTCGCTGGTCCCCGGCAACACGGCTCAGGCAAACGTAAGCGGCTTGTCGCAGAAACCAAGGGGTCCACGAAACGCGCTAGGCTAGAAGGCGGGAAGGAGAGATTACTGACAGCCGTGCCAGCCAATAAAATAGAAATCAACAGTGAGAGCTCAGAAATTCCCAGACTGTTTTGATGATAAGGTCCAAGAACTTGCCATGTGATCCATCACTACTAGACTCCCACAACTGCATTAGATTTGTTCAGGATTTTCATATAATTTTCATAACTGGCTAAGTTCTGAAATAACCCATCTTGAAGACATAAACAATGTGCATTGATGGCTAGCCAGACTCTGTCCTGCCACAGTTCTCCTCCTACTCTTCATTTCTTACCCCAAGGAGTAGTAAACATGAATCCTGACCCACCAATGCAGTCCCAGAACTGAGAAAAGATTCACTGCAGCTAAACAGATTATTTTTGCACCTTTGGAAAGCAACTGAAAAAGGAAGCCTGGAAAAAATCCTGCCTAACAAAGCAGCAGTACTCAAATAGCTTTAACTATAAGAAAGAACTGATTCAAGATATGAGAAGAGATTTAAGATATAAGATTAAATATAAGTGTAAATGATATCCTCATTTTTATTGAAATGCTGTGTATTCCTATTATTTCAGTGAAATGTTAAATGGCAAAGGATGCATTTTTTAGATTATTTTTTTCACTGAATTTTAAACAGTCTTTGAAGCAGATATTTCATATAACAATATCCAGAAACAATAACACATATGTGGATAAAGTTGAGTGGTTGGATAATGTATTGTGCAAATTATCAAGAAGAA</dnaseq>|
 
sequence = <dnaseq>GTCGCTGGTCCCCGGCAACACGGCTCAGGCAAACGTAAGCGGCTTGTCGCAGAAACCAAGGGGTCCACGAAACGCGCTAGGCTAGAAGGCGGGAAGGAGAGATTACTGACAGCCGTGCCAGCCAATAAAATAGAAATCAACAGTGAGAGCTCAGAAATTCCCAGACTGTTTTGATGATAAGGTCCAAGAACTTGCCATGTGATCCATCACTACTAGACTCCCACAACTGCATTAGATTTGTTCAGGATTTTCATATAATTTTCATAACTGGCTAAGTTCTGAAATAACCCATCTTGAAGACATAAACAATGTGCATTGATGGCTAGCCAGACTCTGTCCTGCCACAGTTCTCCTCCTACTCTTCATTTCTTACCCCAAGGAGTAGTAAACATGAATCCTGACCCACCAATGCAGTCCCAGAACTGAGAAAAGATTCACTGCAGCTAAACAGATTATTTTTGCACCTTTGGAAAGCAACTGAAAAAGGAAGCCTGGAAAAAATCCTGCCTAACAAAGCAGCAGTACTCAAATAGCTTTAACTATAAGAAAGAACTGATTCAAGATATGAGAAGAGATTTAAGATATAAGATTAAATATAAGTGTAAATGATATCCTCATTTTTATTGAAATGCTGTGTATTCCTATTATTTCAGTGAAATGTTAAATGGCAAAGGATGCATTTTTTAGATTATTTTTTTCACTGAATTTTAAACAGTCTTTGAAGCAGATATTTCATATAACAATATCCAGAAACAATAACACATATGTGGATAAAGTTGAGTGGTTGGATAATGTATTGTGCAAATTATCAAGAAGAA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-FOXG1-6]]
+
[[Category:Intergenic]][[Category:lnc-FOXG1-6]][[Category:NONHSAG014575]]

Revision as of 15:01, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000547786.1

Source

Gencode19

Same with

lnc-FOXG1-6:3,NONHSAT036098

Classification

intergenic

Length

818 nt

Genomic location

chr14+:27067618..27133613

Exon number

4

Exons

27067618..27067754,27106401..27106539,27132819..27132992,27133246..27133613

Genome context

Sequence
000001 GTCGCTGGTC CCCGGCAACA CGGCTCAGGC AAACGTAAGC GGCTTGTCGC AGAAACCAAG GGGTCCACGA AACGCGCTAG 000080
000081 GCTAGAAGGC GGGAAGGAGA GATTACTGAC AGCCGTGCCA GCCAATAAAA TAGAAATCAA CAGTGAGAGC TCAGAAATTC 000160
000161 CCAGACTGTT TTGATGATAA GGTCCAAGAA CTTGCCATGT GATCCATCAC TACTAGACTC CCACAACTGC ATTAGATTTG 000240
000241 TTCAGGATTT TCATATAATT TTCATAACTG GCTAAGTTCT GAAATAACCC ATCTTGAAGA CATAAACAAT GTGCATTGAT 000320
000321 GGCTAGCCAG ACTCTGTCCT GCCACAGTTC TCCTCCTACT CTTCATTTCT TACCCCAAGG AGTAGTAAAC ATGAATCCTG 000400
000401 ACCCACCAAT GCAGTCCCAG AACTGAGAAA AGATTCACTG CAGCTAAACA GATTATTTTT GCACCTTTGG AAAGCAACTG 000480
000481 AAAAAGGAAG CCTGGAAAAA ATCCTGCCTA ACAAAGCAGC AGTACTCAAA TAGCTTTAAC TATAAGAAAG AACTGATTCA 000560
000561 AGATATGAGA AGAGATTTAA GATATAAGAT TAAATATAAG TGTAAATGAT ATCCTCATTT TTATTGAAAT GCTGTGTATT 000640
000641 CCTATTATTT CAGTGAAATG TTAAATGGCA AAGGATGCAT TTTTTAGATT ATTTTTTTCA CTGAATTTTA AACAGTCTTT 000720
000721 GAAGCAGATA TTTCATATAA CAATATCCAG AAACAATAAC ACATATGTGG ATAAAGTTGA GTGGTTGGAT AATGTATTGT 000800
000801 GCAAATTATC AAGAAGAA
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Predicted Small Protein

Name ENST00000547786.1_smProtein_173:274
Length 34
Molecular weight 3831.4467
Aromaticity 0.0909090909091
Instability index 64.6696969697
Isoelectric point 6.68572998047
Runs 5
Runs residual 0.0326086956522
Runs probability 0.0352057940294
Amino acid sequence MIRSKNLPCDPSLLDSHNCIRFVQDFHIIFITG
Secondary structure LLLLLLLLLLLLLLLLLLHHHHHHLLEEEEELL
PRMN -
PiMo -