Difference between revisions of "ENST00000569854.1"
Line 42: | Line 42: | ||
sequence = <dnaseq>GAGCGCGTCGTGTGGAGGGCGTCGTGACGGGGACGTCGTGAGGGGCGCGCTGTGAGGCGAGTCTCTGCCCCCTCCCCCTGGAGCTCCCGCTCCTCAGCTGCCCCCCGCCGTCAGGGGCTCTTCCTGTCAGTGCCTCATGGGCCCTGCATTCGCCTCCCCCAGGCAGCGCGGTCCTCCTGGGGGAGTCAGCCTGTCTCGCCTGAGCCCGAAGGCCGCCTCCCCTTCTGCCACAGCCCCCTTTGGCTCCCGGCTCTGGAGATCTGCCCTCCAGTGGATCTGTCTGAAACCGCCCTCCCTTAGCCGGGCGGGAGGCAGCAAGCGCGCGCGCTGCGGGCAGGAGCGGTTTCTGCAGGAGGGACCCTGCCCGAGCTAAACACCGAGAAGACGGCAGGAGGCAGAAGGCGAGATGGGGGAAAGGAAGATAATCTGGAAAGTTCCACTGCAGGAAAGACAGTCCCGGTGGCCAGCTGGCCTCTCAGAGGCCCCTTAGTAAGCCGAGGACCCGAACCCTTACGGAAATGTAATTGAGACAAGCCCGAAGCAGAGCGGAACGAAACAGAACAGAGGAGACGCGGGCACAGGAGAGCGCAGAGGGAGCTCTGGGCGCTTAAGGAATGGAGACTGCAGCGGGCCAGCGGGGGCTAAGTCCCGGGGTCGCAGATGCCTGTGTGCGGGGGCAGGTGCTTGCGTGCGGGGCCTGCCCCAGCCCCTGCCTGGCAGAAAGCCCCAGAATCCAGGGGCCTCTGCCCAGAGGAGGTCTCGTCATGTGTCAAAGGACCAGGGCGAGGGCGCTGGGCTTCCCTGGGCTTCGCCGAAGGCCCTGGCACTCACACTGCGGGCCTGGCCGTGGAGGGAAGGGCTCGGGGAGTAAGTGCACGCTCCTGGCACTGTCATGCGTGCAGTGGCCCCGGCACCCGTGAGTGTGTCGGCCAGGCAGTGGGGCGGCAGGGAGCACGTTTGCGGCCCTGGCTTCAACCGACCTGGGCTTCAATTCCGAGTTCCACCGCTTTGGAGCTCTGTGGCCATGGATAATGGCTCAACCTTCCCGAATGATTTTTTTTTTCATCTGCAACCATGGAGAAAATTATAACAGCCACATGAAAGGATTGTTGAGGGGATGCAGTGAGTTCTTTCAAAGCACTAAGTAAACATCCTACACAGTTCTCAGGCCCCGGCTAAATGGGGAAAGCCCCTTGAGGATGGGGCCGTGTTAGCAGGTTACTCTCAGTCCTCAGCACTTCCGCATCCATTATTTCTCTTAATGAATTAATATCTGTGAGGCGTGTGTTATAAATAATATTCCCTAACTGGATTTAAAAGGGGAGCTTCCTGGGAATTTCAGGCTCTTTAAGGAGTGTGGCCCTTGTCACCCTGGGGACCAGGGCCACTGCGGCCAGAGGTGTCAGCCAGGGTGAGGACCTCTTCCTTTTCTTTGAGAGCAGGACTAAATTAACAAGCTGAAGCCAGCTTACCTTGGATGTGGATCATTCTGGCAGTGTTCAACTTTGAGACAAGGAAGTGTGTGACATTATTGTCAGCGGAGAGAGGCCCCAGGCAGAAGGTCACTTCCTGAGGTGTCTGGGGAGCACTGCGGCAAGAGACCCCCATTTCCCAGCAAATGCTTCCTTACTCAATCTTTCGGCTACCTGGACTTTACTACCACATCTACAGAGCCATCATTGGCTTCTAATGATGAGCCTGAGGCACCGGGGCGCCTTCTGAATCATCAGAGCCAGATGAAATTGTGTGTTATTGAGACGTGCTGTTCCCATCTTTGCAAAGAGGCCATGGATGCATGCAATGAAAGCTTTTGCTGAGCCGAATACGCTGTTAGCACGACCGTCTCCCCACTGACGTATTGCACCAGACAAACACCAGACGTCAAGGTCATTGGGAAAGCACCAACATATTCAGCCAGGCAGTGTGGGGATGCACCCCCAGTCCCGAGATGAAAACCTCCAGCCAGCCCAGCGCTTCCCAGCAGGGAGCACAGAACACCATGAAGCCTCAAGATGTTGCTTTCCTAAAACAGACCAGCGTGGTTCATGGATTTGGGGCTCTAAGTGCCCCCCATTTCCCTTCTCCTAGACCTCGTCCCCAGCATCGCGACGCTATTGGGGCTGGAGCACCCAGCTGGGAGGTTAAACTTTCCTAACCTGGGCTCAACCTTGGTTTCGTCTCTCAGTCTTAATTTTGCTTCAGCCTGGTCTGTCTTGCTGGTTTATGCTGTCATCTAACACAGGGCCAGCAATGAAGATGCTTAGTAAAAGCTGTTGAAAGGATAAATTTAAAGGTTTTAATTGTTTTATTTTACTATTTTATTTATTTTTTTCATTTCTTGAATATATAACATGCACTGGCATGCCCCTCTATTCCTCCAGCACTTACTTCTACCATTCAGAGATGAGCACGCTTACCAGTTTCTTGGCAATGCAAGTATTATATAATGCATTATCTGCATAAATATATGTCATATATACACATACATACGTGTATACACATATACAATATATTATATGAGTGACAGTATCCTAAACATACCTCACATTGTTTTTGTTTGTTGTTCTTTTTTTTTTCTTTTTACTTCTTCACATTAGTTTTTTTAACTTTCTATATTGGAAATTGTTTCATTTCAGCACATATAGCGCATCCTCACTCTTTGAAATGGCTTCATAGCATTTTATTGTATGGCAGTACAAATATTTGTTGAACCATCCCCACTAACAGACATTAAATTATTTCCGTTATCTTGCTTTGACAAATACCACCGTGCTCAGTGCACTTGTGCAGGAGTCGTTCTGCACCCTTGGGGTAGATCCATAGGCTAAACACCTAGAGTTGCTGGGTTGAAGACGTCATGCGTATTAAATTTTGTTAGCTGTCGTCAAAGAACCTTCCATGGAAATTTTACCTGTTTACAGTTCCAGCAGCAAAGATAAACTGCGCATTTCCCCCCACCCCCCCGCCCCAACCATCTTTACAAATACAGTGTGGGAACAAACTTTATTTGTACTATTCCTTGCCAATCTGATAAGCAAACAAAATTGTATTTCAGTGTTGTTTTAGTTTGCGTTCTTATTGTAAGGAGTTTGAGCACCAAGGAACTGGTTATGTATGTGTGTACAGTTTTCAGGTACTTTTTAAATTAAGTTACTGTCCTTTTTAAATATTGATTTTTAGGAATCAATATTTAAAACACACAACACAATTAACTGTTTTGGCCGTTTTCCTTTGATGTGAAGTACATGAATTTTTCCTAATTTATTATCATTTAATTTTGTTTCTGGTGATGTTTGCCATTCAGGAATATCTTAGTTTGAGGGGTGGGGAGTTGATCAAATTTCTCAATCTTTTCTTTTCTGGCTTAAAGATTTTGTGTCAGAATTAAAAAGGTCCTTTCTGAATCAGA</dnaseq>| | sequence = <dnaseq>GAGCGCGTCGTGTGGAGGGCGTCGTGACGGGGACGTCGTGAGGGGCGCGCTGTGAGGCGAGTCTCTGCCCCCTCCCCCTGGAGCTCCCGCTCCTCAGCTGCCCCCCGCCGTCAGGGGCTCTTCCTGTCAGTGCCTCATGGGCCCTGCATTCGCCTCCCCCAGGCAGCGCGGTCCTCCTGGGGGAGTCAGCCTGTCTCGCCTGAGCCCGAAGGCCGCCTCCCCTTCTGCCACAGCCCCCTTTGGCTCCCGGCTCTGGAGATCTGCCCTCCAGTGGATCTGTCTGAAACCGCCCTCCCTTAGCCGGGCGGGAGGCAGCAAGCGCGCGCGCTGCGGGCAGGAGCGGTTTCTGCAGGAGGGACCCTGCCCGAGCTAAACACCGAGAAGACGGCAGGAGGCAGAAGGCGAGATGGGGGAAAGGAAGATAATCTGGAAAGTTCCACTGCAGGAAAGACAGTCCCGGTGGCCAGCTGGCCTCTCAGAGGCCCCTTAGTAAGCCGAGGACCCGAACCCTTACGGAAATGTAATTGAGACAAGCCCGAAGCAGAGCGGAACGAAACAGAACAGAGGAGACGCGGGCACAGGAGAGCGCAGAGGGAGCTCTGGGCGCTTAAGGAATGGAGACTGCAGCGGGCCAGCGGGGGCTAAGTCCCGGGGTCGCAGATGCCTGTGTGCGGGGGCAGGTGCTTGCGTGCGGGGCCTGCCCCAGCCCCTGCCTGGCAGAAAGCCCCAGAATCCAGGGGCCTCTGCCCAGAGGAGGTCTCGTCATGTGTCAAAGGACCAGGGCGAGGGCGCTGGGCTTCCCTGGGCTTCGCCGAAGGCCCTGGCACTCACACTGCGGGCCTGGCCGTGGAGGGAAGGGCTCGGGGAGTAAGTGCACGCTCCTGGCACTGTCATGCGTGCAGTGGCCCCGGCACCCGTGAGTGTGTCGGCCAGGCAGTGGGGCGGCAGGGAGCACGTTTGCGGCCCTGGCTTCAACCGACCTGGGCTTCAATTCCGAGTTCCACCGCTTTGGAGCTCTGTGGCCATGGATAATGGCTCAACCTTCCCGAATGATTTTTTTTTTCATCTGCAACCATGGAGAAAATTATAACAGCCACATGAAAGGATTGTTGAGGGGATGCAGTGAGTTCTTTCAAAGCACTAAGTAAACATCCTACACAGTTCTCAGGCCCCGGCTAAATGGGGAAAGCCCCTTGAGGATGGGGCCGTGTTAGCAGGTTACTCTCAGTCCTCAGCACTTCCGCATCCATTATTTCTCTTAATGAATTAATATCTGTGAGGCGTGTGTTATAAATAATATTCCCTAACTGGATTTAAAAGGGGAGCTTCCTGGGAATTTCAGGCTCTTTAAGGAGTGTGGCCCTTGTCACCCTGGGGACCAGGGCCACTGCGGCCAGAGGTGTCAGCCAGGGTGAGGACCTCTTCCTTTTCTTTGAGAGCAGGACTAAATTAACAAGCTGAAGCCAGCTTACCTTGGATGTGGATCATTCTGGCAGTGTTCAACTTTGAGACAAGGAAGTGTGTGACATTATTGTCAGCGGAGAGAGGCCCCAGGCAGAAGGTCACTTCCTGAGGTGTCTGGGGAGCACTGCGGCAAGAGACCCCCATTTCCCAGCAAATGCTTCCTTACTCAATCTTTCGGCTACCTGGACTTTACTACCACATCTACAGAGCCATCATTGGCTTCTAATGATGAGCCTGAGGCACCGGGGCGCCTTCTGAATCATCAGAGCCAGATGAAATTGTGTGTTATTGAGACGTGCTGTTCCCATCTTTGCAAAGAGGCCATGGATGCATGCAATGAAAGCTTTTGCTGAGCCGAATACGCTGTTAGCACGACCGTCTCCCCACTGACGTATTGCACCAGACAAACACCAGACGTCAAGGTCATTGGGAAAGCACCAACATATTCAGCCAGGCAGTGTGGGGATGCACCCCCAGTCCCGAGATGAAAACCTCCAGCCAGCCCAGCGCTTCCCAGCAGGGAGCACAGAACACCATGAAGCCTCAAGATGTTGCTTTCCTAAAACAGACCAGCGTGGTTCATGGATTTGGGGCTCTAAGTGCCCCCCATTTCCCTTCTCCTAGACCTCGTCCCCAGCATCGCGACGCTATTGGGGCTGGAGCACCCAGCTGGGAGGTTAAACTTTCCTAACCTGGGCTCAACCTTGGTTTCGTCTCTCAGTCTTAATTTTGCTTCAGCCTGGTCTGTCTTGCTGGTTTATGCTGTCATCTAACACAGGGCCAGCAATGAAGATGCTTAGTAAAAGCTGTTGAAAGGATAAATTTAAAGGTTTTAATTGTTTTATTTTACTATTTTATTTATTTTTTTCATTTCTTGAATATATAACATGCACTGGCATGCCCCTCTATTCCTCCAGCACTTACTTCTACCATTCAGAGATGAGCACGCTTACCAGTTTCTTGGCAATGCAAGTATTATATAATGCATTATCTGCATAAATATATGTCATATATACACATACATACGTGTATACACATATACAATATATTATATGAGTGACAGTATCCTAAACATACCTCACATTGTTTTTGTTTGTTGTTCTTTTTTTTTTCTTTTTACTTCTTCACATTAGTTTTTTTAACTTTCTATATTGGAAATTGTTTCATTTCAGCACATATAGCGCATCCTCACTCTTTGAAATGGCTTCATAGCATTTTATTGTATGGCAGTACAAATATTTGTTGAACCATCCCCACTAACAGACATTAAATTATTTCCGTTATCTTGCTTTGACAAATACCACCGTGCTCAGTGCACTTGTGCAGGAGTCGTTCTGCACCCTTGGGGTAGATCCATAGGCTAAACACCTAGAGTTGCTGGGTTGAAGACGTCATGCGTATTAAATTTTGTTAGCTGTCGTCAAAGAACCTTCCATGGAAATTTTACCTGTTTACAGTTCCAGCAGCAAAGATAAACTGCGCATTTCCCCCCACCCCCCCGCCCCAACCATCTTTACAAATACAGTGTGGGAACAAACTTTATTTGTACTATTCCTTGCCAATCTGATAAGCAAACAAAATTGTATTTCAGTGTTGTTTTAGTTTGCGTTCTTATTGTAAGGAGTTTGAGCACCAAGGAACTGGTTATGTATGTGTGTACAGTTTTCAGGTACTTTTTAAATTAAGTTACTGTCCTTTTTAAATATTGATTTTTAGGAATCAATATTTAAAACACACAACACAATTAACTGTTTTGGCCGTTTTCCTTTGATGTGAAGTACATGAATTTTTCCTAATTTATTATCATTTAATTTTGTTTCTGGTGATGTTTGCCATTCAGGAATATCTTAGTTTGAGGGGTGGGGAGTTGATCAAATTTCTCAATCTTTTCTTTTCTGGCTTAAAGATTTTGTGTCAGAATTAAAAAGGTCCTTTCTGAATCAGA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:ENSG00000259831.1]][[Category:lnc-LINC00346-3]] | + | [[Category:Intergenic]][[Category:ENSG00000259831.1]][[Category:lnc-LINC00346-3]][[Category:Transcripts]] |
Revision as of 11:49, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000569854.1 |
Source |
Gencode19 |
Same with |
lnc-LINC00346-3:2 |
Classification |
intergenic |
Length |
3409 nt |
Genomic location |
chr13-:111462023..111465431 |
Exon number |
1 |
Exons |
111462023..111465431 |
Genome context |
|
Sequence |
000001 GAGCGCGTCG TGTGGAGGGC GTCGTGACGG GGACGTCGTG AGGGGCGCGC TGTGAGGCGA GTCTCTGCCC CCTCCCCCTG 000080
000081 GAGCTCCCGC TCCTCAGCTG CCCCCCGCCG TCAGGGGCTC TTCCTGTCAG TGCCTCATGG GCCCTGCATT CGCCTCCCCC 000160 000161 AGGCAGCGCG GTCCTCCTGG GGGAGTCAGC CTGTCTCGCC TGAGCCCGAA GGCCGCCTCC CCTTCTGCCA CAGCCCCCTT 000240 000241 TGGCTCCCGG CTCTGGAGAT CTGCCCTCCA GTGGATCTGT CTGAAACCGC CCTCCCTTAG CCGGGCGGGA GGCAGCAAGC 000320 000321 GCGCGCGCTG CGGGCAGGAG CGGTTTCTGC AGGAGGGACC CTGCCCGAGC TAAACACCGA GAAGACGGCA GGAGGCAGAA 000400 000401 GGCGAGATGG GGGAAAGGAA GATAATCTGG AAAGTTCCAC TGCAGGAAAG ACAGTCCCGG TGGCCAGCTG GCCTCTCAGA 000480 000481 GGCCCCTTAG TAAGCCGAGG ACCCGAACCC TTACGGAAAT GTAATTGAGA CAAGCCCGAA GCAGAGCGGA ACGAAACAGA 000560 000561 ACAGAGGAGA CGCGGGCACA GGAGAGCGCA GAGGGAGCTC TGGGCGCTTA AGGAATGGAG ACTGCAGCGG GCCAGCGGGG 000640 000641 GCTAAGTCCC GGGGTCGCAG ATGCCTGTGT GCGGGGGCAG GTGCTTGCGT GCGGGGCCTG CCCCAGCCCC TGCCTGGCAG 000720 000721 AAAGCCCCAG AATCCAGGGG CCTCTGCCCA GAGGAGGTCT CGTCATGTGT CAAAGGACCA GGGCGAGGGC GCTGGGCTTC 000800 000801 CCTGGGCTTC GCCGAAGGCC CTGGCACTCA CACTGCGGGC CTGGCCGTGG AGGGAAGGGC TCGGGGAGTA AGTGCACGCT 000880 000881 CCTGGCACTG TCATGCGTGC AGTGGCCCCG GCACCCGTGA GTGTGTCGGC CAGGCAGTGG GGCGGCAGGG AGCACGTTTG 000960 000961 CGGCCCTGGC TTCAACCGAC CTGGGCTTCA ATTCCGAGTT CCACCGCTTT GGAGCTCTGT GGCCATGGAT AATGGCTCAA 001040 001041 CCTTCCCGAA TGATTTTTTT TTTCATCTGC AACCATGGAG AAAATTATAA CAGCCACATG AAAGGATTGT TGAGGGGATG 001120 001121 CAGTGAGTTC TTTCAAAGCA CTAAGTAAAC ATCCTACACA GTTCTCAGGC CCCGGCTAAA TGGGGAAAGC CCCTTGAGGA 001200 001201 TGGGGCCGTG TTAGCAGGTT ACTCTCAGTC CTCAGCACTT CCGCATCCAT TATTTCTCTT AATGAATTAA TATCTGTGAG 001280 001281 GCGTGTGTTA TAAATAATAT TCCCTAACTG GATTTAAAAG GGGAGCTTCC TGGGAATTTC AGGCTCTTTA AGGAGTGTGG 001360 001361 CCCTTGTCAC CCTGGGGACC AGGGCCACTG CGGCCAGAGG TGTCAGCCAG GGTGAGGACC TCTTCCTTTT CTTTGAGAGC 001440 001441 AGGACTAAAT TAACAAGCTG AAGCCAGCTT ACCTTGGATG TGGATCATTC TGGCAGTGTT CAACTTTGAG ACAAGGAAGT 001520 001521 GTGTGACATT ATTGTCAGCG GAGAGAGGCC CCAGGCAGAA GGTCACTTCC TGAGGTGTCT GGGGAGCACT GCGGCAAGAG 001600 001601 ACCCCCATTT CCCAGCAAAT GCTTCCTTAC TCAATCTTTC GGCTACCTGG ACTTTACTAC CACATCTACA GAGCCATCAT 001680 001681 TGGCTTCTAA TGATGAGCCT GAGGCACCGG GGCGCCTTCT GAATCATCAG AGCCAGATGA AATTGTGTGT TATTGAGACG 001760 001761 TGCTGTTCCC ATCTTTGCAA AGAGGCCATG GATGCATGCA ATGAAAGCTT TTGCTGAGCC GAATACGCTG TTAGCACGAC 001840 001841 CGTCTCCCCA CTGACGTATT GCACCAGACA AACACCAGAC GTCAAGGTCA TTGGGAAAGC ACCAACATAT TCAGCCAGGC 001920 001921 AGTGTGGGGA TGCACCCCCA GTCCCGAGAT GAAAACCTCC AGCCAGCCCA GCGCTTCCCA GCAGGGAGCA CAGAACACCA 002000 002001 TGAAGCCTCA AGATGTTGCT TTCCTAAAAC AGACCAGCGT GGTTCATGGA TTTGGGGCTC TAAGTGCCCC CCATTTCCCT 002080 002081 TCTCCTAGAC CTCGTCCCCA GCATCGCGAC GCTATTGGGG CTGGAGCACC CAGCTGGGAG GTTAAACTTT CCTAACCTGG 002160 002161 GCTCAACCTT GGTTTCGTCT CTCAGTCTTA ATTTTGCTTC AGCCTGGTCT GTCTTGCTGG TTTATGCTGT CATCTAACAC 002240 002241 AGGGCCAGCA ATGAAGATGC TTAGTAAAAG CTGTTGAAAG GATAAATTTA AAGGTTTTAA TTGTTTTATT TTACTATTTT 002320 002321 ATTTATTTTT TTCATTTCTT GAATATATAA CATGCACTGG CATGCCCCTC TATTCCTCCA GCACTTACTT CTACCATTCA 002400 002401 GAGATGAGCA CGCTTACCAG TTTCTTGGCA ATGCAAGTAT TATATAATGC ATTATCTGCA TAAATATATG TCATATATAC 002480 002481 ACATACATAC GTGTATACAC ATATACAATA TATTATATGA GTGACAGTAT CCTAAACATA CCTCACATTG TTTTTGTTTG 002560 002561 TTGTTCTTTT TTTTTTCTTT TTACTTCTTC ACATTAGTTT TTTTAACTTT CTATATTGGA AATTGTTTCA TTTCAGCACA 002640 002641 TATAGCGCAT CCTCACTCTT TGAAATGGCT TCATAGCATT TTATTGTATG GCAGTACAAA TATTTGTTGA ACCATCCCCA 002720 002721 CTAACAGACA TTAAATTATT TCCGTTATCT TGCTTTGACA AATACCACCG TGCTCAGTGC ACTTGTGCAG GAGTCGTTCT 002800 002801 GCACCCTTGG GGTAGATCCA TAGGCTAAAC ACCTAGAGTT GCTGGGTTGA AGACGTCATG CGTATTAAAT TTTGTTAGCT 002880 002881 GTCGTCAAAG AACCTTCCAT GGAAATTTTA CCTGTTTACA GTTCCAGCAG CAAAGATAAA CTGCGCATTT CCCCCCACCC 002960 002961 CCCCGCCCCA ACCATCTTTA CAAATACAGT GTGGGAACAA ACTTTATTTG TACTATTCCT TGCCAATCTG ATAAGCAAAC 003040 003041 AAAATTGTAT TTCAGTGTTG TTTTAGTTTG CGTTCTTATT GTAAGGAGTT TGAGCACCAA GGAACTGGTT ATGTATGTGT 003120 003121 GTACAGTTTT CAGGTACTTT TTAAATTAAG TTACTGTCCT TTTTAAATAT TGATTTTTAG GAATCAATAT TTAAAACACA 003200 003201 CAACACAATT AACTGTTTTG GCCGTTTTCC TTTGATGTGA AGTACATGAA TTTTTCCTAA TTTATTATCA TTTAATTTTG 003280 003281 TTTCTGGTGA TGTTTGCCAT TCAGGAATAT CTTAGTTTGA GGGGTGGGGA GTTGATCAAA TTTCTCAATC TTTTCTTTTC 003360 003361 TGGCTTAAAG ATTTTGTGTC AGAATTAAAA AGGTCCTTTC TGAATCAGA |