Difference between revisions of "ENST00000569854.1"

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sequence = <dnaseq>GAGCGCGTCGTGTGGAGGGCGTCGTGACGGGGACGTCGTGAGGGGCGCGCTGTGAGGCGAGTCTCTGCCCCCTCCCCCTGGAGCTCCCGCTCCTCAGCTGCCCCCCGCCGTCAGGGGCTCTTCCTGTCAGTGCCTCATGGGCCCTGCATTCGCCTCCCCCAGGCAGCGCGGTCCTCCTGGGGGAGTCAGCCTGTCTCGCCTGAGCCCGAAGGCCGCCTCCCCTTCTGCCACAGCCCCCTTTGGCTCCCGGCTCTGGAGATCTGCCCTCCAGTGGATCTGTCTGAAACCGCCCTCCCTTAGCCGGGCGGGAGGCAGCAAGCGCGCGCGCTGCGGGCAGGAGCGGTTTCTGCAGGAGGGACCCTGCCCGAGCTAAACACCGAGAAGACGGCAGGAGGCAGAAGGCGAGATGGGGGAAAGGAAGATAATCTGGAAAGTTCCACTGCAGGAAAGACAGTCCCGGTGGCCAGCTGGCCTCTCAGAGGCCCCTTAGTAAGCCGAGGACCCGAACCCTTACGGAAATGTAATTGAGACAAGCCCGAAGCAGAGCGGAACGAAACAGAACAGAGGAGACGCGGGCACAGGAGAGCGCAGAGGGAGCTCTGGGCGCTTAAGGAATGGAGACTGCAGCGGGCCAGCGGGGGCTAAGTCCCGGGGTCGCAGATGCCTGTGTGCGGGGGCAGGTGCTTGCGTGCGGGGCCTGCCCCAGCCCCTGCCTGGCAGAAAGCCCCAGAATCCAGGGGCCTCTGCCCAGAGGAGGTCTCGTCATGTGTCAAAGGACCAGGGCGAGGGCGCTGGGCTTCCCTGGGCTTCGCCGAAGGCCCTGGCACTCACACTGCGGGCCTGGCCGTGGAGGGAAGGGCTCGGGGAGTAAGTGCACGCTCCTGGCACTGTCATGCGTGCAGTGGCCCCGGCACCCGTGAGTGTGTCGGCCAGGCAGTGGGGCGGCAGGGAGCACGTTTGCGGCCCTGGCTTCAACCGACCTGGGCTTCAATTCCGAGTTCCACCGCTTTGGAGCTCTGTGGCCATGGATAATGGCTCAACCTTCCCGAATGATTTTTTTTTTCATCTGCAACCATGGAGAAAATTATAACAGCCACATGAAAGGATTGTTGAGGGGATGCAGTGAGTTCTTTCAAAGCACTAAGTAAACATCCTACACAGTTCTCAGGCCCCGGCTAAATGGGGAAAGCCCCTTGAGGATGGGGCCGTGTTAGCAGGTTACTCTCAGTCCTCAGCACTTCCGCATCCATTATTTCTCTTAATGAATTAATATCTGTGAGGCGTGTGTTATAAATAATATTCCCTAACTGGATTTAAAAGGGGAGCTTCCTGGGAATTTCAGGCTCTTTAAGGAGTGTGGCCCTTGTCACCCTGGGGACCAGGGCCACTGCGGCCAGAGGTGTCAGCCAGGGTGAGGACCTCTTCCTTTTCTTTGAGAGCAGGACTAAATTAACAAGCTGAAGCCAGCTTACCTTGGATGTGGATCATTCTGGCAGTGTTCAACTTTGAGACAAGGAAGTGTGTGACATTATTGTCAGCGGAGAGAGGCCCCAGGCAGAAGGTCACTTCCTGAGGTGTCTGGGGAGCACTGCGGCAAGAGACCCCCATTTCCCAGCAAATGCTTCCTTACTCAATCTTTCGGCTACCTGGACTTTACTACCACATCTACAGAGCCATCATTGGCTTCTAATGATGAGCCTGAGGCACCGGGGCGCCTTCTGAATCATCAGAGCCAGATGAAATTGTGTGTTATTGAGACGTGCTGTTCCCATCTTTGCAAAGAGGCCATGGATGCATGCAATGAAAGCTTTTGCTGAGCCGAATACGCTGTTAGCACGACCGTCTCCCCACTGACGTATTGCACCAGACAAACACCAGACGTCAAGGTCATTGGGAAAGCACCAACATATTCAGCCAGGCAGTGTGGGGATGCACCCCCAGTCCCGAGATGAAAACCTCCAGCCAGCCCAGCGCTTCCCAGCAGGGAGCACAGAACACCATGAAGCCTCAAGATGTTGCTTTCCTAAAACAGACCAGCGTGGTTCATGGATTTGGGGCTCTAAGTGCCCCCCATTTCCCTTCTCCTAGACCTCGTCCCCAGCATCGCGACGCTATTGGGGCTGGAGCACCCAGCTGGGAGGTTAAACTTTCCTAACCTGGGCTCAACCTTGGTTTCGTCTCTCAGTCTTAATTTTGCTTCAGCCTGGTCTGTCTTGCTGGTTTATGCTGTCATCTAACACAGGGCCAGCAATGAAGATGCTTAGTAAAAGCTGTTGAAAGGATAAATTTAAAGGTTTTAATTGTTTTATTTTACTATTTTATTTATTTTTTTCATTTCTTGAATATATAACATGCACTGGCATGCCCCTCTATTCCTCCAGCACTTACTTCTACCATTCAGAGATGAGCACGCTTACCAGTTTCTTGGCAATGCAAGTATTATATAATGCATTATCTGCATAAATATATGTCATATATACACATACATACGTGTATACACATATACAATATATTATATGAGTGACAGTATCCTAAACATACCTCACATTGTTTTTGTTTGTTGTTCTTTTTTTTTTCTTTTTACTTCTTCACATTAGTTTTTTTAACTTTCTATATTGGAAATTGTTTCATTTCAGCACATATAGCGCATCCTCACTCTTTGAAATGGCTTCATAGCATTTTATTGTATGGCAGTACAAATATTTGTTGAACCATCCCCACTAACAGACATTAAATTATTTCCGTTATCTTGCTTTGACAAATACCACCGTGCTCAGTGCACTTGTGCAGGAGTCGTTCTGCACCCTTGGGGTAGATCCATAGGCTAAACACCTAGAGTTGCTGGGTTGAAGACGTCATGCGTATTAAATTTTGTTAGCTGTCGTCAAAGAACCTTCCATGGAAATTTTACCTGTTTACAGTTCCAGCAGCAAAGATAAACTGCGCATTTCCCCCCACCCCCCCGCCCCAACCATCTTTACAAATACAGTGTGGGAACAAACTTTATTTGTACTATTCCTTGCCAATCTGATAAGCAAACAAAATTGTATTTCAGTGTTGTTTTAGTTTGCGTTCTTATTGTAAGGAGTTTGAGCACCAAGGAACTGGTTATGTATGTGTGTACAGTTTTCAGGTACTTTTTAAATTAAGTTACTGTCCTTTTTAAATATTGATTTTTAGGAATCAATATTTAAAACACACAACACAATTAACTGTTTTGGCCGTTTTCCTTTGATGTGAAGTACATGAATTTTTCCTAATTTATTATCATTTAATTTTGTTTCTGGTGATGTTTGCCATTCAGGAATATCTTAGTTTGAGGGGTGGGGAGTTGATCAAATTTCTCAATCTTTTCTTTTCTGGCTTAAAGATTTTGTGTCAGAATTAAAAAGGTCCTTTCTGAATCAGA</dnaseq>|
 
sequence = <dnaseq>GAGCGCGTCGTGTGGAGGGCGTCGTGACGGGGACGTCGTGAGGGGCGCGCTGTGAGGCGAGTCTCTGCCCCCTCCCCCTGGAGCTCCCGCTCCTCAGCTGCCCCCCGCCGTCAGGGGCTCTTCCTGTCAGTGCCTCATGGGCCCTGCATTCGCCTCCCCCAGGCAGCGCGGTCCTCCTGGGGGAGTCAGCCTGTCTCGCCTGAGCCCGAAGGCCGCCTCCCCTTCTGCCACAGCCCCCTTTGGCTCCCGGCTCTGGAGATCTGCCCTCCAGTGGATCTGTCTGAAACCGCCCTCCCTTAGCCGGGCGGGAGGCAGCAAGCGCGCGCGCTGCGGGCAGGAGCGGTTTCTGCAGGAGGGACCCTGCCCGAGCTAAACACCGAGAAGACGGCAGGAGGCAGAAGGCGAGATGGGGGAAAGGAAGATAATCTGGAAAGTTCCACTGCAGGAAAGACAGTCCCGGTGGCCAGCTGGCCTCTCAGAGGCCCCTTAGTAAGCCGAGGACCCGAACCCTTACGGAAATGTAATTGAGACAAGCCCGAAGCAGAGCGGAACGAAACAGAACAGAGGAGACGCGGGCACAGGAGAGCGCAGAGGGAGCTCTGGGCGCTTAAGGAATGGAGACTGCAGCGGGCCAGCGGGGGCTAAGTCCCGGGGTCGCAGATGCCTGTGTGCGGGGGCAGGTGCTTGCGTGCGGGGCCTGCCCCAGCCCCTGCCTGGCAGAAAGCCCCAGAATCCAGGGGCCTCTGCCCAGAGGAGGTCTCGTCATGTGTCAAAGGACCAGGGCGAGGGCGCTGGGCTTCCCTGGGCTTCGCCGAAGGCCCTGGCACTCACACTGCGGGCCTGGCCGTGGAGGGAAGGGCTCGGGGAGTAAGTGCACGCTCCTGGCACTGTCATGCGTGCAGTGGCCCCGGCACCCGTGAGTGTGTCGGCCAGGCAGTGGGGCGGCAGGGAGCACGTTTGCGGCCCTGGCTTCAACCGACCTGGGCTTCAATTCCGAGTTCCACCGCTTTGGAGCTCTGTGGCCATGGATAATGGCTCAACCTTCCCGAATGATTTTTTTTTTCATCTGCAACCATGGAGAAAATTATAACAGCCACATGAAAGGATTGTTGAGGGGATGCAGTGAGTTCTTTCAAAGCACTAAGTAAACATCCTACACAGTTCTCAGGCCCCGGCTAAATGGGGAAAGCCCCTTGAGGATGGGGCCGTGTTAGCAGGTTACTCTCAGTCCTCAGCACTTCCGCATCCATTATTTCTCTTAATGAATTAATATCTGTGAGGCGTGTGTTATAAATAATATTCCCTAACTGGATTTAAAAGGGGAGCTTCCTGGGAATTTCAGGCTCTTTAAGGAGTGTGGCCCTTGTCACCCTGGGGACCAGGGCCACTGCGGCCAGAGGTGTCAGCCAGGGTGAGGACCTCTTCCTTTTCTTTGAGAGCAGGACTAAATTAACAAGCTGAAGCCAGCTTACCTTGGATGTGGATCATTCTGGCAGTGTTCAACTTTGAGACAAGGAAGTGTGTGACATTATTGTCAGCGGAGAGAGGCCCCAGGCAGAAGGTCACTTCCTGAGGTGTCTGGGGAGCACTGCGGCAAGAGACCCCCATTTCCCAGCAAATGCTTCCTTACTCAATCTTTCGGCTACCTGGACTTTACTACCACATCTACAGAGCCATCATTGGCTTCTAATGATGAGCCTGAGGCACCGGGGCGCCTTCTGAATCATCAGAGCCAGATGAAATTGTGTGTTATTGAGACGTGCTGTTCCCATCTTTGCAAAGAGGCCATGGATGCATGCAATGAAAGCTTTTGCTGAGCCGAATACGCTGTTAGCACGACCGTCTCCCCACTGACGTATTGCACCAGACAAACACCAGACGTCAAGGTCATTGGGAAAGCACCAACATATTCAGCCAGGCAGTGTGGGGATGCACCCCCAGTCCCGAGATGAAAACCTCCAGCCAGCCCAGCGCTTCCCAGCAGGGAGCACAGAACACCATGAAGCCTCAAGATGTTGCTTTCCTAAAACAGACCAGCGTGGTTCATGGATTTGGGGCTCTAAGTGCCCCCCATTTCCCTTCTCCTAGACCTCGTCCCCAGCATCGCGACGCTATTGGGGCTGGAGCACCCAGCTGGGAGGTTAAACTTTCCTAACCTGGGCTCAACCTTGGTTTCGTCTCTCAGTCTTAATTTTGCTTCAGCCTGGTCTGTCTTGCTGGTTTATGCTGTCATCTAACACAGGGCCAGCAATGAAGATGCTTAGTAAAAGCTGTTGAAAGGATAAATTTAAAGGTTTTAATTGTTTTATTTTACTATTTTATTTATTTTTTTCATTTCTTGAATATATAACATGCACTGGCATGCCCCTCTATTCCTCCAGCACTTACTTCTACCATTCAGAGATGAGCACGCTTACCAGTTTCTTGGCAATGCAAGTATTATATAATGCATTATCTGCATAAATATATGTCATATATACACATACATACGTGTATACACATATACAATATATTATATGAGTGACAGTATCCTAAACATACCTCACATTGTTTTTGTTTGTTGTTCTTTTTTTTTTCTTTTTACTTCTTCACATTAGTTTTTTTAACTTTCTATATTGGAAATTGTTTCATTTCAGCACATATAGCGCATCCTCACTCTTTGAAATGGCTTCATAGCATTTTATTGTATGGCAGTACAAATATTTGTTGAACCATCCCCACTAACAGACATTAAATTATTTCCGTTATCTTGCTTTGACAAATACCACCGTGCTCAGTGCACTTGTGCAGGAGTCGTTCTGCACCCTTGGGGTAGATCCATAGGCTAAACACCTAGAGTTGCTGGGTTGAAGACGTCATGCGTATTAAATTTTGTTAGCTGTCGTCAAAGAACCTTCCATGGAAATTTTACCTGTTTACAGTTCCAGCAGCAAAGATAAACTGCGCATTTCCCCCCACCCCCCCGCCCCAACCATCTTTACAAATACAGTGTGGGAACAAACTTTATTTGTACTATTCCTTGCCAATCTGATAAGCAAACAAAATTGTATTTCAGTGTTGTTTTAGTTTGCGTTCTTATTGTAAGGAGTTTGAGCACCAAGGAACTGGTTATGTATGTGTGTACAGTTTTCAGGTACTTTTTAAATTAAGTTACTGTCCTTTTTAAATATTGATTTTTAGGAATCAATATTTAAAACACACAACACAATTAACTGTTTTGGCCGTTTTCCTTTGATGTGAAGTACATGAATTTTTCCTAATTTATTATCATTTAATTTTGTTTCTGGTGATGTTTGCCATTCAGGAATATCTTAGTTTGAGGGGTGGGGAGTTGATCAAATTTCTCAATCTTTTCTTTTCTGGCTTAAAGATTTTGTGTCAGAATTAAAAAGGTCCTTTCTGAATCAGA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:ENSG00000259831.1]][[Category:lnc-LINC00346-3]]
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[[Category:Intergenic]][[Category:ENSG00000259831.1]][[Category:lnc-LINC00346-3]][[Category:Transcripts]]

Revision as of 11:49, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000569854.1

Source

Gencode19

Same with

lnc-LINC00346-3:2

Classification

intergenic

Length

3409 nt

Genomic location

chr13-:111462023..111465431

Exon number

1

Exons

111462023..111465431

Genome context

Sequence
000001 GAGCGCGTCG TGTGGAGGGC GTCGTGACGG GGACGTCGTG AGGGGCGCGC TGTGAGGCGA GTCTCTGCCC CCTCCCCCTG 000080
000081 GAGCTCCCGC TCCTCAGCTG CCCCCCGCCG TCAGGGGCTC TTCCTGTCAG TGCCTCATGG GCCCTGCATT CGCCTCCCCC 000160
000161 AGGCAGCGCG GTCCTCCTGG GGGAGTCAGC CTGTCTCGCC TGAGCCCGAA GGCCGCCTCC CCTTCTGCCA CAGCCCCCTT 000240
000241 TGGCTCCCGG CTCTGGAGAT CTGCCCTCCA GTGGATCTGT CTGAAACCGC CCTCCCTTAG CCGGGCGGGA GGCAGCAAGC 000320
000321 GCGCGCGCTG CGGGCAGGAG CGGTTTCTGC AGGAGGGACC CTGCCCGAGC TAAACACCGA GAAGACGGCA GGAGGCAGAA 000400
000401 GGCGAGATGG GGGAAAGGAA GATAATCTGG AAAGTTCCAC TGCAGGAAAG ACAGTCCCGG TGGCCAGCTG GCCTCTCAGA 000480
000481 GGCCCCTTAG TAAGCCGAGG ACCCGAACCC TTACGGAAAT GTAATTGAGA CAAGCCCGAA GCAGAGCGGA ACGAAACAGA 000560
000561 ACAGAGGAGA CGCGGGCACA GGAGAGCGCA GAGGGAGCTC TGGGCGCTTA AGGAATGGAG ACTGCAGCGG GCCAGCGGGG 000640
000641 GCTAAGTCCC GGGGTCGCAG ATGCCTGTGT GCGGGGGCAG GTGCTTGCGT GCGGGGCCTG CCCCAGCCCC TGCCTGGCAG 000720
000721 AAAGCCCCAG AATCCAGGGG CCTCTGCCCA GAGGAGGTCT CGTCATGTGT CAAAGGACCA GGGCGAGGGC GCTGGGCTTC 000800
000801 CCTGGGCTTC GCCGAAGGCC CTGGCACTCA CACTGCGGGC CTGGCCGTGG AGGGAAGGGC TCGGGGAGTA AGTGCACGCT 000880
000881 CCTGGCACTG TCATGCGTGC AGTGGCCCCG GCACCCGTGA GTGTGTCGGC CAGGCAGTGG GGCGGCAGGG AGCACGTTTG 000960
000961 CGGCCCTGGC TTCAACCGAC CTGGGCTTCA ATTCCGAGTT CCACCGCTTT GGAGCTCTGT GGCCATGGAT AATGGCTCAA 001040
001041 CCTTCCCGAA TGATTTTTTT TTTCATCTGC AACCATGGAG AAAATTATAA CAGCCACATG AAAGGATTGT TGAGGGGATG 001120
001121 CAGTGAGTTC TTTCAAAGCA CTAAGTAAAC ATCCTACACA GTTCTCAGGC CCCGGCTAAA TGGGGAAAGC CCCTTGAGGA 001200
001201 TGGGGCCGTG TTAGCAGGTT ACTCTCAGTC CTCAGCACTT CCGCATCCAT TATTTCTCTT AATGAATTAA TATCTGTGAG 001280
001281 GCGTGTGTTA TAAATAATAT TCCCTAACTG GATTTAAAAG GGGAGCTTCC TGGGAATTTC AGGCTCTTTA AGGAGTGTGG 001360
001361 CCCTTGTCAC CCTGGGGACC AGGGCCACTG CGGCCAGAGG TGTCAGCCAG GGTGAGGACC TCTTCCTTTT CTTTGAGAGC 001440
001441 AGGACTAAAT TAACAAGCTG AAGCCAGCTT ACCTTGGATG TGGATCATTC TGGCAGTGTT CAACTTTGAG ACAAGGAAGT 001520
001521 GTGTGACATT ATTGTCAGCG GAGAGAGGCC CCAGGCAGAA GGTCACTTCC TGAGGTGTCT GGGGAGCACT GCGGCAAGAG 001600
001601 ACCCCCATTT CCCAGCAAAT GCTTCCTTAC TCAATCTTTC GGCTACCTGG ACTTTACTAC CACATCTACA GAGCCATCAT 001680
001681 TGGCTTCTAA TGATGAGCCT GAGGCACCGG GGCGCCTTCT GAATCATCAG AGCCAGATGA AATTGTGTGT TATTGAGACG 001760
001761 TGCTGTTCCC ATCTTTGCAA AGAGGCCATG GATGCATGCA ATGAAAGCTT TTGCTGAGCC GAATACGCTG TTAGCACGAC 001840
001841 CGTCTCCCCA CTGACGTATT GCACCAGACA AACACCAGAC GTCAAGGTCA TTGGGAAAGC ACCAACATAT TCAGCCAGGC 001920
001921 AGTGTGGGGA TGCACCCCCA GTCCCGAGAT GAAAACCTCC AGCCAGCCCA GCGCTTCCCA GCAGGGAGCA CAGAACACCA 002000
002001 TGAAGCCTCA AGATGTTGCT TTCCTAAAAC AGACCAGCGT GGTTCATGGA TTTGGGGCTC TAAGTGCCCC CCATTTCCCT 002080
002081 TCTCCTAGAC CTCGTCCCCA GCATCGCGAC GCTATTGGGG CTGGAGCACC CAGCTGGGAG GTTAAACTTT CCTAACCTGG 002160
002161 GCTCAACCTT GGTTTCGTCT CTCAGTCTTA ATTTTGCTTC AGCCTGGTCT GTCTTGCTGG TTTATGCTGT CATCTAACAC 002240
002241 AGGGCCAGCA ATGAAGATGC TTAGTAAAAG CTGTTGAAAG GATAAATTTA AAGGTTTTAA TTGTTTTATT TTACTATTTT 002320
002321 ATTTATTTTT TTCATTTCTT GAATATATAA CATGCACTGG CATGCCCCTC TATTCCTCCA GCACTTACTT CTACCATTCA 002400
002401 GAGATGAGCA CGCTTACCAG TTTCTTGGCA ATGCAAGTAT TATATAATGC ATTATCTGCA TAAATATATG TCATATATAC 002480
002481 ACATACATAC GTGTATACAC ATATACAATA TATTATATGA GTGACAGTAT CCTAAACATA CCTCACATTG TTTTTGTTTG 002560
002561 TTGTTCTTTT TTTTTTCTTT TTACTTCTTC ACATTAGTTT TTTTAACTTT CTATATTGGA AATTGTTTCA TTTCAGCACA 002640
002641 TATAGCGCAT CCTCACTCTT TGAAATGGCT TCATAGCATT TTATTGTATG GCAGTACAAA TATTTGTTGA ACCATCCCCA 002720
002721 CTAACAGACA TTAAATTATT TCCGTTATCT TGCTTTGACA AATACCACCG TGCTCAGTGC ACTTGTGCAG GAGTCGTTCT 002800
002801 GCACCCTTGG GGTAGATCCA TAGGCTAAAC ACCTAGAGTT GCTGGGTTGA AGACGTCATG CGTATTAAAT TTTGTTAGCT 002880
002881 GTCGTCAAAG AACCTTCCAT GGAAATTTTA CCTGTTTACA GTTCCAGCAG CAAAGATAAA CTGCGCATTT CCCCCCACCC 002960
002961 CCCCGCCCCA ACCATCTTTA CAAATACAGT GTGGGAACAA ACTTTATTTG TACTATTCCT TGCCAATCTG ATAAGCAAAC 003040
003041 AAAATTGTAT TTCAGTGTTG TTTTAGTTTG CGTTCTTATT GTAAGGAGTT TGAGCACCAA GGAACTGGTT ATGTATGTGT 003120
003121 GTACAGTTTT CAGGTACTTT TTAAATTAAG TTACTGTCCT TTTTAAATAT TGATTTTTAG GAATCAATAT TTAAAACACA 003200
003201 CAACACAATT AACTGTTTTG GCCGTTTTCC TTTGATGTGA AGTACATGAA TTTTTCCTAA TTTATTATCA TTTAATTTTG 003280
003281 TTTCTGGTGA TGTTTGCCAT TCAGGAATAT CTTAGTTTGA GGGGTGGGGA GTTGATCAAA TTTCTCAATC TTTTCTTTTC 003360
003361 TGGCTTAAAG ATTTTGTGTC AGAATTAAAA AGGTCCTTTC TGAATCAGA
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