Difference between revisions of "ENST00000596487.1"
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sequence = <dnaseq>AATTTTTAAAGAAGAGAAATTTATTTCTTACAGTTCTGGAGGCTGAGATATCCAAAATCAAGGGCCTTCTTGCTGGTGGGGACTCTGCAGAGTCTTGAGGTAGCACAGGGCATCACATGGCTAGCAGGCTGTGTGCAAGCTCAGGTCTCTCTTCCTTTTTTTTTTGAAACGGAGTCCTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGACTTTGGCTCACTGTAACCTCCACCTCAACCTTTGCCTTCTGGGTCCAAGTGATTCTCGTGCCTCAGCCTCCCAAGTAGATGGGATTACAGGCATCCGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGATTTCTCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCGTGCCTTGGCCTCCCAAGGTGCTGGAATTACAGGCATGAGCCACTGAGCCTGGCCTTTCTTCCTCTTTTTATTTTATTTTATTTATTTTATTTATTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGTCTAAAATATTTGCTTTCTGTCCCTTTTATACAAAAAGTTTTGTTGATTCCTAGCCTACAGCAACACTTGATGTAGAGTTGTCAATCCATAAGCATCTGGTGGAAAAATGCTGTTAACAATAAAAATGAAACTAATCTAAAATACATGTGCATTTATTTGCACAGAAAAAAACAGGCTGGGTAAAGTAGCTCATGCCTATAATCCTAGCACTTTGGGAGGCCGAGGCGGGAGGATTACTTGAGCACAGGAGTTCAGGGCTAGTGAGCTATGATCATGACACTGCACTCCAGCGTGGGCCACAGAGCAAGACCTTGTCTCAAGAAAAAAGAAAAAAAAAAACGGATAAAGGAAAAAAAAGCGGCGGGGGCGGGGGGCAGGTATAGCCAACTAAGCATTAACCATCTCAAGAGGATCAGTTTATATCGGACGTCCACAGCAGAAATTTGCTGCTTCTGGCTATCTTTTCCCCACAATTAGCAAGGGTTAGCTTCATTATTTTAGAGGCAACCCAACTGCAGCTTTTAGAAAGGCGCTGTGCCCTCTAGGCCAGCAATTTGAGGGCATGGGTTGGGGGGTACCCCGCCCCAGTCTTCCTGACCAAAGAGTGGAGCGGAAGAAAGCCAGGAGGAGGATGTTTTGAACCTAAATACGTCCAGCTGCAATCCCAGTCAAGCTCGTCGCCCCCAGTTCTGCTCCACCTCCGGTCTGGCCGGGGAGAATGTGACAGTCGCCGCAGCCCGGGATCCACCCGGACGCACCTCACCTCGCAGTCTCCTCACTGTGCCCGCGAAAGGAAAGAGACCCTGGCCCAGGCACGAAGTCCCCAGGCCCCTGGTCGCCCGGAGGTAGCAACCAGCCAGCCCATCGGGCTGCGACGCCGACCAAGGGGCACGCCCCGCGCCCCCCGGTCTCGACTAACACCCACCCGCGCCGTTCCAGCCTTTCCGCGGCGCCGCGCGACGGGGACCCACTCTGCGAAAGT</dnaseq>| | sequence = <dnaseq>AATTTTTAAAGAAGAGAAATTTATTTCTTACAGTTCTGGAGGCTGAGATATCCAAAATCAAGGGCCTTCTTGCTGGTGGGGACTCTGCAGAGTCTTGAGGTAGCACAGGGCATCACATGGCTAGCAGGCTGTGTGCAAGCTCAGGTCTCTCTTCCTTTTTTTTTTGAAACGGAGTCCTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGACTTTGGCTCACTGTAACCTCCACCTCAACCTTTGCCTTCTGGGTCCAAGTGATTCTCGTGCCTCAGCCTCCCAAGTAGATGGGATTACAGGCATCCGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGATTTCTCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCGTGCCTTGGCCTCCCAAGGTGCTGGAATTACAGGCATGAGCCACTGAGCCTGGCCTTTCTTCCTCTTTTTATTTTATTTTATTTATTTTATTTATTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGTCTAAAATATTTGCTTTCTGTCCCTTTTATACAAAAAGTTTTGTTGATTCCTAGCCTACAGCAACACTTGATGTAGAGTTGTCAATCCATAAGCATCTGGTGGAAAAATGCTGTTAACAATAAAAATGAAACTAATCTAAAATACATGTGCATTTATTTGCACAGAAAAAAACAGGCTGGGTAAAGTAGCTCATGCCTATAATCCTAGCACTTTGGGAGGCCGAGGCGGGAGGATTACTTGAGCACAGGAGTTCAGGGCTAGTGAGCTATGATCATGACACTGCACTCCAGCGTGGGCCACAGAGCAAGACCTTGTCTCAAGAAAAAAGAAAAAAAAAAACGGATAAAGGAAAAAAAAGCGGCGGGGGCGGGGGGCAGGTATAGCCAACTAAGCATTAACCATCTCAAGAGGATCAGTTTATATCGGACGTCCACAGCAGAAATTTGCTGCTTCTGGCTATCTTTTCCCCACAATTAGCAAGGGTTAGCTTCATTATTTTAGAGGCAACCCAACTGCAGCTTTTAGAAAGGCGCTGTGCCCTCTAGGCCAGCAATTTGAGGGCATGGGTTGGGGGGTACCCCGCCCCAGTCTTCCTGACCAAAGAGTGGAGCGGAAGAAAGCCAGGAGGAGGATGTTTTGAACCTAAATACGTCCAGCTGCAATCCCAGTCAAGCTCGTCGCCCCCAGTTCTGCTCCACCTCCGGTCTGGCCGGGGAGAATGTGACAGTCGCCGCAGCCCGGGATCCACCCGGACGCACCTCACCTCGCAGTCTCCTCACTGTGCCCGCGAAAGGAAAGAGACCCTGGCCCAGGCACGAAGTCCCCAGGCCCCTGGTCGCCCGGAGGTAGCAACCAGCCAGCCCATCGGGCTGCGACGCCGACCAAGGGGCACGCCCCGCGCCCCCCGGTCTCGACTAACACCCACCCGCGCCGTTCCAGCCTTTCCGCGGCGCCGCGCGACGGGGACCCACTCTGCGAAAGT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:ENSG00000269399.1]][[Category:NONHSAG025043]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:ENSG00000269399.1]][[Category:NONHSAG025043]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 18:40, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000596487.1 |
Source |
Gencode19 |
Same with |
NONHSAT062790 |
Classification |
intergenic |
Length |
1534 nt |
Genomic location |
chr19-:16653434..16655625 |
Exon number |
2 |
Exons |
16653434..16654416,16655075..16655625 |
Genome context |
|
Sequence |
000001 AATTTTTAAA GAAGAGAAAT TTATTTCTTA CAGTTCTGGA GGCTGAGATA TCCAAAATCA AGGGCCTTCT TGCTGGTGGG 000080
000081 GACTCTGCAG AGTCTTGAGG TAGCACAGGG CATCACATGG CTAGCAGGCT GTGTGCAAGC TCAGGTCTCT CTTCCTTTTT 000160 000161 TTTTTGAAAC GGAGTCCTGC TCTGTTGCCC AGGCTGGAGT GCAGTGGCAC GACTTTGGCT CACTGTAACC TCCACCTCAA 000240 000241 CCTTTGCCTT CTGGGTCCAA GTGATTCTCG TGCCTCAGCC TCCCAAGTAG ATGGGATTAC AGGCATCCGC CACCATGCCC 000320 000321 GGCTAATTTT TGTATTTTTA GTAGAGATGG GATTTCTCCA TGTTGGCCAG GCTGGTCTCG AACTCCTGAC CTCAGGTGAT 000400 000401 CTGCGTGCCT TGGCCTCCCA AGGTGCTGGA ATTACAGGCA TGAGCCACTG AGCCTGGCCT TTCTTCCTCT TTTTATTTTA 000480 000481 TTTTATTTAT TTTATTTATT TTTTTTTTTT GAGATGGAGT CTCACTCTGT CGCCCAGGCT GGAGTGCAGT GTCTAAAATA 000560 000561 TTTGCTTTCT GTCCCTTTTA TACAAAAAGT TTTGTTGATT CCTAGCCTAC AGCAACACTT GATGTAGAGT TGTCAATCCA 000640 000641 TAAGCATCTG GTGGAAAAAT GCTGTTAACA ATAAAAATGA AACTAATCTA AAATACATGT GCATTTATTT GCACAGAAAA 000720 000721 AAACAGGCTG GGTAAAGTAG CTCATGCCTA TAATCCTAGC ACTTTGGGAG GCCGAGGCGG GAGGATTACT TGAGCACAGG 000800 000801 AGTTCAGGGC TAGTGAGCTA TGATCATGAC ACTGCACTCC AGCGTGGGCC ACAGAGCAAG ACCTTGTCTC AAGAAAAAAG 000880 000881 AAAAAAAAAA ACGGATAAAG GAAAAAAAAG CGGCGGGGGC GGGGGGCAGG TATAGCCAAC TAAGCATTAA CCATCTCAAG 000960 000961 AGGATCAGTT TATATCGGAC GTCCACAGCA GAAATTTGCT GCTTCTGGCT ATCTTTTCCC CACAATTAGC AAGGGTTAGC 001040 001041 TTCATTATTT TAGAGGCAAC CCAACTGCAG CTTTTAGAAA GGCGCTGTGC CCTCTAGGCC AGCAATTTGA GGGCATGGGT 001120 001121 TGGGGGGTAC CCCGCCCCAG TCTTCCTGAC CAAAGAGTGG AGCGGAAGAA AGCCAGGAGG AGGATGTTTT GAACCTAAAT 001200 001201 ACGTCCAGCT GCAATCCCAG TCAAGCTCGT CGCCCCCAGT TCTGCTCCAC CTCCGGTCTG GCCGGGGAGA ATGTGACAGT 001280 001281 CGCCGCAGCC CGGGATCCAC CCGGACGCAC CTCACCTCGC AGTCTCCTCA CTGTGCCCGC GAAAGGAAAG AGACCCTGGC 001360 001361 CCAGGCACGA AGTCCCCAGG CCCCTGGTCG CCCGGAGGTA GCAACCAGCC AGCCCATCGG GCTGCGACGC CGACCAAGGG 001440 001441 GCACGCCCCG CGCCCCCCGG TCTCGACTAA CACCCACCCG CGCCGTTCCA GCCTTTCCGC GGCGCCGCGC GACGGGGACC 001520 001521 CACTCTGCGA AAGT |
Predicted Small Protein
Name | ENST00000596487.1_smProtein_743:934 |
Length | 64 |
Molecular weight | 6732.5544 |
Aromaticity | 0.031746031746 |
Instability index | 63.5412698413 |
Isoelectric point | 9.69622802734 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0433472688375 |
Amino acid sequence | MPIILALWEAEAGGLLEHRSSGLVSYDHDTALQRGPQSKTLSQEKRKKKTDKGKKSGGGG GQV |
Secondary structure | LLHHHHHHHHHHLLLEEELLLLLEEELLLLLLLLLLLLLLLLHHHHHHHLLLLLLLLLLL LLL |
PRMN | - |
PiMo | - |