ENST00000601888.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000601888.1

Source

Gencode19

Same with

NONHSAT013650

Classification

intergenic

Length

781 nt

Genomic location

chr10+:67375491..67430594

Exon number

2

Exons

67375491..67375519,67429843..67430594

Genome context

Sequence
000001 GGCACTACAA GTGACATGCC ACTGGGCAGG ATTTTTATTT CATTTGCAAT GAATGAAGAA GCACAGCTCT GAAAGACTGA 000080
000081 ATTCCCAGCA CTGGGTGTCA GCTCTACCAA ATGCGGTACA GATTGCAATC TGACCACAGA ATCTCACCAC AAAGAATGCC 000160
000161 GGGGTCTCCT CTGATTATAG CTACTGGCTA TAAGTTCTAA CTAGGGTTTA ATGCAAATTT TCCCTGTAGT CTGCTTGGGG 000240
000241 AGTTGGCCTC ATTCTTGAAT TTTTCTCAGA AAGTTATTGC CAAAAATGTG AGTTCTCACC GCAGTGAAAG AGGAAATCCA 000320
000321 GCTATGAGCA TATATAATAC AGGAGAAAGA ATGCAGAGAA AACACATTCT TTTCTTGCTA CTCAGTTGCC AGAGAAGTAT 000400
000401 ATCTATAATA TTTTCAGTTG TGATGCTATG TCCCATTGAA TTCAACCACA CATTGGAAAA ATCAGTTTAC CCTAGAATCT 000480
000481 AGTTATTGTT GTGGTACAGT TTAATTTTTG TCAAATAATT CTTTCTAAAA TTTCTAATGT AAGTCTTTAA TTTTCAAGAT 000560
000561 ATTTTGCTTA GAAGATGATA TGGTTTGGCT GTGTCCCCAC CCAAATCTCA CCTTGAATTC CCAGGTGTTG TAGGGGGCAG 000640
000641 GTCTTTCCTG TGCTGTTCTT GTGAAAGTGA GTAAGTCTCA TGAGATCTGA AGGCTTTGAA AAACAGGAAT CTCCCTGTAC 000720
000721 AAGCTCTCTC TTTGCCTGCT GCCATCCATG TAAGACGTGA CTTGCTCCTT CTTGTCTTCT G
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Predicted Small Protein

Name ENST00000601888.1_smProtein_323:481
Length 53
Molecular weight 6157.3236
Aromaticity 0.0961538461538
Instability index 47.6923076923
Isoelectric point 9.30010986328
Runs 5
Runs residual 0.0542155584528
Runs probability 0.0281045751634
Amino acid sequence MSIYNTGERMQRKHILFLLLSCQRSISIIFSVVMLCPIEFNHTLEKSVYPRI
Secondary structure LLLLLLHHHHHHHHHHHHHHHHLLLEEEEEEEEEELLLLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooo