Difference between revisions of "Lnc-C1orf227-1:5"

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sequence = <dnaseq>ATTTTCCTGCCCGGAAGGATGCATGGCCCGGGGTCTCCTGCACCTGAGGGTGGGCGGGAGGCGGCCCCGCGGGTTGTGTTGCTGGAAAAAGGGGTCTCGATCCAGACCCCAAGAGAGGGTTCTTGGGTCTACTTCAGGGAAGAATTGGAGGCGAGTCACAGAGCGCAGTGAAGGAAGCAAGTTTATTGGAATCTACTCCGTTAGAGAGTGCAAGTCCTCAGACTGCAGGAGGAGGAACTCCCGTCCTTCGGTAGTGTCACTACTTAGAGGCAGCTGTGAGGAGCTGTGATTAATCGTGGAATGTGCTGATGTGCCCACTAAAGAGAGCTTTGCCCTTGGAGTCCAGGCTGGAGTGCAATGATGAAATCTCAGCTGACTGCAACTTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAACTGAGATTACAGGTGCCCACACCCGGGTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTCGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTACCTCAGCCTCCCAAAGTGCTGGGGTTACAGGCATGAGCCACCGTGCCCGGCCACCATTCTAATTTCTTAATCTTGTCTTCTTTCTCTGGCTTCAGTGGTAGATATTTATTAACCAGTTTAAACATGAGTCATTATTTATATCAAATGTTTGGATGTATAACGTAAAATGAACCTTAATCTCTGTCAAAAAAGATACTACTGGGAGCATCGTTTGGCTGGGAGTCAAGATGAGATTGAGCTACTTTATGGGTGTGGAATGCCAAGTCAGAGAGATTTGAATAAGTAACACTTCAGCAATATGAGATCTGGACAGCATCCAGGAGCCAAGGTCCAAGATGCTAATAGGAGTGATGTAGCTGTCCCTGAACAAAGGTTTGCCACAGTTTACGAGCCTCAGAGGTTAAGATGCAAACCAGAACAATGCTATTGGATGTGCAATCCATGATGTTTCATGGGGAGGTGGGTAGATTTGGGCAACCTTGCCTTCAGTTTACTCCTACTAGCATCAGGCTCTGTCCACCTGATCAGCAGAGGCTATATGGTTCTATTTTGTGAAAAGATCAAGTTGGAAATGGAGGAGTAGAGGAGAAGGTTGGAAATCAGAATCCTCCCACATGTATTCTTCCCTCCATTGAGACATTTTATTTGTATATATTTATTCCTGAAAAAAAAAAAAAAAAAAGAGTCCCAGGATTTTTTCTCCTGTGTTTTTGTCTTGTTTCTTCTCGGTCCATGATGCCAGTTGAGGTCATCAGTACAGCGAAACCAAACTGGTGAGATGGGAACAAATTATTCTGTCACTTTTCTAGATCTTTTTATTTATTTTTTTATTTATTTTTTGAGATGGAGTCTCGCTCTTGTTGCCCAGTCTGGAGTGCAATGGCGAGCCTGGGTTCAAGACCAGCCTGGGTAACATGGCGAAACCCCTTCTCTACCAAAAAAATACAGTATTTAGCTGGGCCTGGTGCATGCCTGTAGTCCCAGCTACCTGAGAGGCTGAGGTGGGAAGATCGCTTGAGCCCAGGAGGTCAAGGCTGCAATGGGCTGAGATCACGCCACTCCAGCCTAGGCAACAGAGTGAGGCCTTGTCAAAAAAAAAAAAGAGAGAGAGAGAGATACAAGCCTTCAGAGACCCTCATATTAACTTCATGGTAAATCTGCCTCTGCTCACCCCTCCCACCTGTAGCAACTAATATCTTCATTTCCAGATTTACTCTGAAAAAACTGTGCAACTGCTTCACATGTTTCCTCTTGATTCACTAATTTGTAACTCACTTACTGAAACTCTGATGAAAGAATTGAGTCAAAAAATAAATAGACCTCCTTCCCAGCCCTGGCTTGTTCAGAGCATCTACTACAGAGGAGTCTTAAGGGTTTTGTATGCTTAGAGTTGAGAGACCAAATAGCTCCTGAAAACTGTAGCTAGAGGAAATGCCATATGGAGACAGGCCACAAGGAGAACTCAAGCCCCTGTAAACCAAAAATGAAATATTCTAAGCCCCCAATTTACTAAACAGATTCAACCTCCCACTTCAGCCTCCCAAATAGCTGGGATTACAGGCGCATGCAACCATGCCCGGCAAATTTTTGTGTTTTTTGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACTTCAAGTGATCTGTCCACCTCACCCTCCCAAAGTGCTGGGATTAGTGAGCCACTGCAACAGCCCTCTAACACTTATTTCTGAAGTTTTTTTTCTTCCCTCCTTCTCGGAAGCCCCTTCCTCCCTCTCTTGTTGCCTTAAGGTACCTTCACCCTGGCTAGGCCCTATTGTTCTTTTATCGGTTTTTTGTTTGTTTCTTTAGCCTACATATGCTCTTCCACCTGGGTTATACAAATGCAAAGTACACCCTAGTTCCATGCTGGGCCTTATTATTAACAAGAACTTTCTGAATCTCTTAAGATGTAGTGAAAGCAGATATACATAAACTATGTTGAACT</dnaseq>|
 
sequence = <dnaseq>ATTTTCCTGCCCGGAAGGATGCATGGCCCGGGGTCTCCTGCACCTGAGGGTGGGCGGGAGGCGGCCCCGCGGGTTGTGTTGCTGGAAAAAGGGGTCTCGATCCAGACCCCAAGAGAGGGTTCTTGGGTCTACTTCAGGGAAGAATTGGAGGCGAGTCACAGAGCGCAGTGAAGGAAGCAAGTTTATTGGAATCTACTCCGTTAGAGAGTGCAAGTCCTCAGACTGCAGGAGGAGGAACTCCCGTCCTTCGGTAGTGTCACTACTTAGAGGCAGCTGTGAGGAGCTGTGATTAATCGTGGAATGTGCTGATGTGCCCACTAAAGAGAGCTTTGCCCTTGGAGTCCAGGCTGGAGTGCAATGATGAAATCTCAGCTGACTGCAACTTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAACTGAGATTACAGGTGCCCACACCCGGGTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTCGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTACCTCAGCCTCCCAAAGTGCTGGGGTTACAGGCATGAGCCACCGTGCCCGGCCACCATTCTAATTTCTTAATCTTGTCTTCTTTCTCTGGCTTCAGTGGTAGATATTTATTAACCAGTTTAAACATGAGTCATTATTTATATCAAATGTTTGGATGTATAACGTAAAATGAACCTTAATCTCTGTCAAAAAAGATACTACTGGGAGCATCGTTTGGCTGGGAGTCAAGATGAGATTGAGCTACTTTATGGGTGTGGAATGCCAAGTCAGAGAGATTTGAATAAGTAACACTTCAGCAATATGAGATCTGGACAGCATCCAGGAGCCAAGGTCCAAGATGCTAATAGGAGTGATGTAGCTGTCCCTGAACAAAGGTTTGCCACAGTTTACGAGCCTCAGAGGTTAAGATGCAAACCAGAACAATGCTATTGGATGTGCAATCCATGATGTTTCATGGGGAGGTGGGTAGATTTGGGCAACCTTGCCTTCAGTTTACTCCTACTAGCATCAGGCTCTGTCCACCTGATCAGCAGAGGCTATATGGTTCTATTTTGTGAAAAGATCAAGTTGGAAATGGAGGAGTAGAGGAGAAGGTTGGAAATCAGAATCCTCCCACATGTATTCTTCCCTCCATTGAGACATTTTATTTGTATATATTTATTCCTGAAAAAAAAAAAAAAAAAAGAGTCCCAGGATTTTTTCTCCTGTGTTTTTGTCTTGTTTCTTCTCGGTCCATGATGCCAGTTGAGGTCATCAGTACAGCGAAACCAAACTGGTGAGATGGGAACAAATTATTCTGTCACTTTTCTAGATCTTTTTATTTATTTTTTTATTTATTTTTTGAGATGGAGTCTCGCTCTTGTTGCCCAGTCTGGAGTGCAATGGCGAGCCTGGGTTCAAGACCAGCCTGGGTAACATGGCGAAACCCCTTCTCTACCAAAAAAATACAGTATTTAGCTGGGCCTGGTGCATGCCTGTAGTCCCAGCTACCTGAGAGGCTGAGGTGGGAAGATCGCTTGAGCCCAGGAGGTCAAGGCTGCAATGGGCTGAGATCACGCCACTCCAGCCTAGGCAACAGAGTGAGGCCTTGTCAAAAAAAAAAAAGAGAGAGAGAGAGATACAAGCCTTCAGAGACCCTCATATTAACTTCATGGTAAATCTGCCTCTGCTCACCCCTCCCACCTGTAGCAACTAATATCTTCATTTCCAGATTTACTCTGAAAAAACTGTGCAACTGCTTCACATGTTTCCTCTTGATTCACTAATTTGTAACTCACTTACTGAAACTCTGATGAAAGAATTGAGTCAAAAAATAAATAGACCTCCTTCCCAGCCCTGGCTTGTTCAGAGCATCTACTACAGAGGAGTCTTAAGGGTTTTGTATGCTTAGAGTTGAGAGACCAAATAGCTCCTGAAAACTGTAGCTAGAGGAAATGCCATATGGAGACAGGCCACAAGGAGAACTCAAGCCCCTGTAAACCAAAAATGAAATATTCTAAGCCCCCAATTTACTAAACAGATTCAACCTCCCACTTCAGCCTCCCAAATAGCTGGGATTACAGGCGCATGCAACCATGCCCGGCAAATTTTTGTGTTTTTTGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACTTCAAGTGATCTGTCCACCTCACCCTCCCAAAGTGCTGGGATTAGTGAGCCACTGCAACAGCCCTCTAACACTTATTTCTGAAGTTTTTTTTCTTCCCTCCTTCTCGGAAGCCCCTTCCTCCCTCTCTTGTTGCCTTAAGGTACCTTCACCCTGGCTAGGCCCTATTGTTCTTTTATCGGTTTTTTGTTTGTTTCTTTAGCCTACATATGCTCTTCCACCTGGGTTATACAAATGCAAAGTACACCCTAGTTCCATGCTGGGCCTTATTATTAACAAGAACTTTCTGAATCTCTTAAGATGTAGTGAAAGCAGATATACATAAACTATGTTGAACT</dnaseq>|
 
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:lnc-C1orf227-1]]

Revision as of 13:34, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-C1orf227-1:5

Source

LNCipedia2.1

Same with

NONHSAT009404

Classification

intergenic

Length

2527 nt

Genomic location

chr1-:213025450..213031430

Exon number

2

Exons

213025450..213027653,213031108..213031430

Genome context

Sequence
000001 ATTTTCCTGC CCGGAAGGAT GCATGGCCCG GGGTCTCCTG CACCTGAGGG TGGGCGGGAG GCGGCCCCGC GGGTTGTGTT 000080
000081 GCTGGAAAAA GGGGTCTCGA TCCAGACCCC AAGAGAGGGT TCTTGGGTCT ACTTCAGGGA AGAATTGGAG GCGAGTCACA 000160
000161 GAGCGCAGTG AAGGAAGCAA GTTTATTGGA ATCTACTCCG TTAGAGAGTG CAAGTCCTCA GACTGCAGGA GGAGGAACTC 000240
000241 CCGTCCTTCG GTAGTGTCAC TACTTAGAGG CAGCTGTGAG GAGCTGTGAT TAATCGTGGA ATGTGCTGAT GTGCCCACTA 000320
000321 AAGAGAGCTT TGCCCTTGGA GTCCAGGCTG GAGTGCAATG ATGAAATCTC AGCTGACTGC AACTTCTGCC TCCCGGGTTC 000400
000401 AAGTGATTCT CCTGCCTCAG CCTCCCAAGT AACTGAGATT ACAGGTGCCC ACACCCGGGT AATTTTTGTA TTTTTAGTAG 000480
000481 AGACAGGGTT TCTCCATGTC GGTCAGGCTG GTCTCGAACT CCTGACCTCA GGTGATCCAC CTACCTCAGC CTCCCAAAGT 000560
000561 GCTGGGGTTA CAGGCATGAG CCACCGTGCC CGGCCACCAT TCTAATTTCT TAATCTTGTC TTCTTTCTCT GGCTTCAGTG 000640
000641 GTAGATATTT ATTAACCAGT TTAAACATGA GTCATTATTT ATATCAAATG TTTGGATGTA TAACGTAAAA TGAACCTTAA 000720
000721 TCTCTGTCAA AAAAGATACT ACTGGGAGCA TCGTTTGGCT GGGAGTCAAG ATGAGATTGA GCTACTTTAT GGGTGTGGAA 000800
000801 TGCCAAGTCA GAGAGATTTG AATAAGTAAC ACTTCAGCAA TATGAGATCT GGACAGCATC CAGGAGCCAA GGTCCAAGAT 000880
000881 GCTAATAGGA GTGATGTAGC TGTCCCTGAA CAAAGGTTTG CCACAGTTTA CGAGCCTCAG AGGTTAAGAT GCAAACCAGA 000960
000961 ACAATGCTAT TGGATGTGCA ATCCATGATG TTTCATGGGG AGGTGGGTAG ATTTGGGCAA CCTTGCCTTC AGTTTACTCC 001040
001041 TACTAGCATC AGGCTCTGTC CACCTGATCA GCAGAGGCTA TATGGTTCTA TTTTGTGAAA AGATCAAGTT GGAAATGGAG 001120
001121 GAGTAGAGGA GAAGGTTGGA AATCAGAATC CTCCCACATG TATTCTTCCC TCCATTGAGA CATTTTATTT GTATATATTT 001200
001201 ATTCCTGAAA AAAAAAAAAA AAAAAGAGTC CCAGGATTTT TTCTCCTGTG TTTTTGTCTT GTTTCTTCTC GGTCCATGAT 001280
001281 GCCAGTTGAG GTCATCAGTA CAGCGAAACC AAACTGGTGA GATGGGAACA AATTATTCTG TCACTTTTCT AGATCTTTTT 001360
001361 ATTTATTTTT TTATTTATTT TTTGAGATGG AGTCTCGCTC TTGTTGCCCA GTCTGGAGTG CAATGGCGAG CCTGGGTTCA 001440
001441 AGACCAGCCT GGGTAACATG GCGAAACCCC TTCTCTACCA AAAAAATACA GTATTTAGCT GGGCCTGGTG CATGCCTGTA 001520
001521 GTCCCAGCTA CCTGAGAGGC TGAGGTGGGA AGATCGCTTG AGCCCAGGAG GTCAAGGCTG CAATGGGCTG AGATCACGCC 001600
001601 ACTCCAGCCT AGGCAACAGA GTGAGGCCTT GTCAAAAAAA AAAAAGAGAG AGAGAGAGAT ACAAGCCTTC AGAGACCCTC 001680
001681 ATATTAACTT CATGGTAAAT CTGCCTCTGC TCACCCCTCC CACCTGTAGC AACTAATATC TTCATTTCCA GATTTACTCT 001760
001761 GAAAAAACTG TGCAACTGCT TCACATGTTT CCTCTTGATT CACTAATTTG TAACTCACTT ACTGAAACTC TGATGAAAGA 001840
001841 ATTGAGTCAA AAAATAAATA GACCTCCTTC CCAGCCCTGG CTTGTTCAGA GCATCTACTA CAGAGGAGTC TTAAGGGTTT 001920
001921 TGTATGCTTA GAGTTGAGAG ACCAAATAGC TCCTGAAAAC TGTAGCTAGA GGAAATGCCA TATGGAGACA GGCCACAAGG 002000
002001 AGAACTCAAG CCCCTGTAAA CCAAAAATGA AATATTCTAA GCCCCCAATT TACTAAACAG ATTCAACCTC CCACTTCAGC 002080
002081 CTCCCAAATA GCTGGGATTA CAGGCGCATG CAACCATGCC CGGCAAATTT TTGTGTTTTT TGTAGAGATG GGGTTTCGCC 002160
002161 ATGTTGGCCA GGCTGGTCTT GAACTCCTGA CTTCAAGTGA TCTGTCCACC TCACCCTCCC AAAGTGCTGG GATTAGTGAG 002240
002241 CCACTGCAAC AGCCCTCTAA CACTTATTTC TGAAGTTTTT TTTCTTCCCT CCTTCTCGGA AGCCCCTTCC TCCCTCTCTT 002320
002321 GTTGCCTTAA GGTACCTTCA CCCTGGCTAG GCCCTATTGT TCTTTTATCG GTTTTTTGTT TGTTTCTTTA GCCTACATAT 002400
002401 GCTCTTCCAC CTGGGTTATA CAAATGCAAA GTACACCCTA GTTCCATGCT GGGCCTTATT ATTAACAAGA ACTTTCTGAA 002480
002481 TCTCTTAAGA TGTAGTGAAA GCAGATATAC ATAAACTATG TTGAACT
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