Lnc-PRL-6:1

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Annotated Information

Name

BX118339

Characteristics

Longest identified isoform is 738bp with 4 exons. Deep sequencing has also identified two shorter isoforms (Cabili (2011)). Some exons overlap multiple SINEs.

Function

Transcript disrupted by a balanced translocation, 46,XY,t(2;6)(p15;p22.3), in a patient with West Syndrome (a form of infant epilepsy). Lack of effect on other nearby genes or presence of mutations in known West Syndrome disease genes leads to possible implication of BX118339 in the clinical phenotype (Vandeweyer (2012)).

Expression

Transcript isoform(s) expressed in testis (Cabili (2011)) and also reported in fetal brain (Vandeweyer (2012)).

Conservation

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Misc

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Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

Annotation originallay sourced from lncRNAdb.

Basic Information

Transcript ID	lnc-PRL-6:1
Source	LNCipedia2.1
Same with	NONHSAT108038
Classification	intergenic
Length	507 nt
Genomic location	chr6-:21486298..21502716
Exon number	2
Exons	21486298..21486760,21502673..21502716
Genome context
Sequence	000001 GAAGGCTCCT GGTCTACCAC AGGAGGTGAT CTCTAGTGAA GAAGGTTCTC TTACAAGACC ACCAACATTC TTCAAACATC 000080 000081 AGTGAAATAA AACAGGAGGA GGGTTTCGAG CTCTGGATCC TCAGCCTGGA AATGTCACAA TTTAATCCCA AAGGTTTGCT 000160 000161 GTGAAGTTGT AAGCATGACA GTGTGAAACT CGACAGATTA TTCTTGAATT CTTTGTTTGT TTTCGTTGTG ACCCGACTCT 000240 000241 CATAAAATTT ATGTTTTCTT CCAAACCCCC AGGGTGTGTG GTCATATGAC TTAAATAGAG AAAAACATTG TCAAAACAGT 000320 000321 ATTGAGGAGT TATCACTTTT ACATTGTTTT AATTAAAGAA AAAGCCTTTC TATCCAGGTC TAATACCATC ATTTTTATGG 000400 000401 GCATGTTAAA GTATCTAATC TAATACTGTA GTTAGTAGTA GTATTTAGTA TTTTTAGTAT TATTATAGTT TTATCTGTAT 000480 000481 CTTAAAGAAA AAGTCAATAA ATATGAA

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