Difference between revisions of "Lnc-PRL-6:1"
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==Annotated Information==
===Transcriptomic Nomeclature===
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[[Category:Intergenic]] | [[Category:Intergenic]] | ||
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| + | {{lncrnadb| | ||
| + | tID = lnc-PRL-6:1| | ||
| + | ltID = BX118339| | ||
| + | ann = <tab class=wikitable sep=tab head=top> | ||
| + | Section Description | ||
| + | ID BX118339 | ||
| + | Characteristics Longest identified isoform is 738bp with 4 exons. Deep sequencing has also identified two shorter isoforms [http://www.ncbi.nlm.nih.gov/pubmed/21890647 (Cabili (2011))]. Some exons overlap multiple SINEs | ||
| + | Expression Transcript isoform(s) expressed in testis [http://www.ncbi.nlm.nih.gov/pubmed/21890647 (Cabili (2011))] and also reported in fetal brain [http://www.ncbi.nlm.nih.gov/pubmed/22245136 (Vandeweyer (2012))]. | ||
| + | Function Transcript disrupted by a balanced translocation, 46,XY,t(2;6)(p15;p22.3), in a patient with West Syndrome (a form of infant epilepsy). Lack of effect on other nearby genes or presence of mutations in known West Syndrome disease genes leads to possible implication of BX118339 in the clinical phenotype [http://www.ncbi.nlm.nih.gov/pubmed/22245136 (Vandeweyer (2012))]. | ||
| + | </tab>| | ||
| + | }} | ||
Revision as of 11:41, 6 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
lnc-PRL-6:1 |
| Source |
LNCipedia2.1 |
| Same with |
NONHSAT108038 |
| Classification |
intergenic |
| Length |
507 nt |
| Genomic location |
chr6-:21486298..21502716 |
| Exon number |
2 |
| Exons |
21486298..21486760,21502673..21502716 |
| Genome context |
|
| Sequence |
000001 GAAGGCTCCT GGTCTACCAC AGGAGGTGAT CTCTAGTGAA GAAGGTTCTC TTACAAGACC ACCAACATTC TTCAAACATC 000080
000081 AGTGAAATAA AACAGGAGGA GGGTTTCGAG CTCTGGATCC TCAGCCTGGA AATGTCACAA TTTAATCCCA AAGGTTTGCT 000160 000161 GTGAAGTTGT AAGCATGACA GTGTGAAACT CGACAGATTA TTCTTGAATT CTTTGTTTGT TTTCGTTGTG ACCCGACTCT 000240 000241 CATAAAATTT ATGTTTTCTT CCAAACCCCC AGGGTGTGTG GTCATATGAC TTAAATAGAG AAAAACATTG TCAAAACAGT 000320 000321 ATTGAGGAGT TATCACTTTT ACATTGTTTT AATTAAAGAA AAAGCCTTTC TATCCAGGTC TAATACCATC ATTTTTATGG 000400 000401 GCATGTTAAA GTATCTAATC TAATACTGTA GTTAGTAGTA GTATTTAGTA TTTTTAGTAT TATTATAGTT TTATCTGTAT 000480 000481 CTTAAAGAAA AAGTCAATAA ATATGAA |
Annotation (From lncRNAdb)
| Section | Description |
|---|---|
| ID | BX118339 |
| Characteristics | Longest identified isoform is 738bp with 4 exons. Deep sequencing has also identified two shorter isoforms (Cabili (2011)). Some exons overlap multiple SINEs |
| Expression | Transcript isoform(s) expressed in testis (Cabili (2011)) and also reported in fetal brain (Vandeweyer (2012)). |
| Function | Transcript disrupted by a balanced translocation, 46,XY,t(2;6)(p15;p22.3), in a patient with West Syndrome (a form of infant epilepsy). Lack of effect on other nearby genes or presence of mutations in known West Syndrome disease genes leads to possible implication of BX118339 in the clinical phenotype (Vandeweyer (2012)). |
