Difference between revisions of "Lnc-PRL-6:2"

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==References==
 
==References==
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[http://www.lncrnadb.org/BX118339/ Annotation originallay sourced from lncRNAdb.]
  
 
{{basic|
 
{{basic|
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sequence = <dnaseq>TGAATATCAGCACGGATCACTGCAAAGAAGTTGGAACTCATCTCACATGAACTTCTCAGGTTCTCTTACAAGACCACCAACATTCTTCAAACATCAGTGAAATAAAACAGGAGGAGGGTTTCGAGCTCTGGATCCTCAGCCTGGAAATGTCACAATTTAATCCCAAAGGTTTGCTGTGAAGTTGTAAGCATGACAGTGTGAAACTCGACAGATTATTCTTGAATTCTTTGTTTGTTTTCGTTGTGACCCGACTCTCATAAAATTTATGTTTTCTTCCAAA</dnaseq>|
 
sequence = <dnaseq>TGAATATCAGCACGGATCACTGCAAAGAAGTTGGAACTCATCTCACATGAACTTCTCAGGTTCTCTTACAAGACCACCAACATTCTTCAAACATCAGTGAAATAAAACAGGAGGAGGGTTTCGAGCTCTGGATCCTCAGCCTGGAAATGTCACAATTTAATCCCAAAGGTTTGCTGTGAAGTTGTAAGCATGACAGTGTGAAACTCGACAGATTATTCTTGAATTCTTTGTTTGTTTTCGTTGTGACCCGACTCTCATAAAATTTATGTTTTCTTCCAAA</dnaseq>|
 
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[[Category:Intergenic]][[Category:lnc-PRL-6]][[Category:NONHSAG043147]]
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[[Category:Intergenic]][[Category:lnc-PRL-6]][[Category:NONHSAG043147]][[Category:Transcripts]]

Latest revision as of 05:45, 26 August 2015

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Annotated Information

Name

BX118339

Characteristics

Longest identified isoform is 738bp with 4 exons. Deep sequencing has also identified two shorter isoforms (Cabili (2011)). Some exons overlap multiple SINEs

Function

Transcript disrupted by a balanced translocation, 46,XY,t(2;6)(p15;p22.3), in a patient with West Syndrome (a form of infant epilepsy). Lack of effect on other nearby genes or presence of mutations in known West Syndrome disease genes leads to possible implication of BX118339 in the clinical phenotype (Vandeweyer (2012)).

Expression

Transcript isoform(s) expressed in testis (Cabili (2011)) and also reported in fetal brain (Vandeweyer (2012)).

Conservation

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Misc

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Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

Annotation originallay sourced from lncRNAdb.

Basic Information

Transcript ID

lnc-PRL-6:2

Source

LNCipedia2.1

Same with

NONHSAT108039

Classification

intergenic

Length

280 nt

Genomic location

chr6-:21486540..21490497

Exon number

2

Exons

21486540..21486760,21490439..21490497

Genome context

Sequence
000001 TGAATATCAG CACGGATCAC TGCAAAGAAG TTGGAACTCA TCTCACATGA ACTTCTCAGG TTCTCTTACA AGACCACCAA 000080
000081 CATTCTTCAA ACATCAGTGA AATAAAACAG GAGGAGGGTT TCGAGCTCTG GATCCTCAGC CTGGAAATGT CACAATTTAA 000160
000161 TCCCAAAGGT TTGCTGTGAA GTTGTAAGCA TGACAGTGTG AAACTCGACA GATTATTCTT GAATTCTTTG TTTGTTTTCG 000240
000241 TTGTGACCCG ACTCTCATAA AATTTATGTT TTCTTCCAAA
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