Difference between revisions of "NKAIN3-IT1"

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Latest revision as of 02:35, 24 December 2018

NKAIN3-IT1, is dysregulated in Glioblastoma.

Annotated Information

Approved Symbol

NKAIN3-IT1

Approved Name

NKAIN3-IT1: NKAIN3 intronic transcript, LOC643763

Characteristics

NKAIN3-IT1 is a long noncoding RNA located on chromosome 8q12.3 [1].

Function

NKAIN3-IT1 belongs to the novel class of molecular candidates that mediate Glioblastoma cell differentiation maintenance and differenciation [1].

Regulation

NA

Diseases

  • Glioblastoma Multiforme [1]

Expression

NKAIN3-IT1 is expressed during GSC maintenance and differentiation [1]

Labs working on this lncRNA

  • Department of Surgery, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China

References

  1. 1.0 1.1 1.2 1.3 Zhang X, Kiang KM, Zhang GP & Leung GK. Long Non-Coding RNAs Dysregulation and Function in Glioblastoma Stem Cells[J]. Non-coding RNA. 2015, 1(1):69-86

Sequence

>gi|643763|ref|NR_027378.1|Homo sapiens NKAIN3 intronic transcript (NKAIN3-IT1), long non-coding RNA

000001 GGTCTTTGGC ATTGGTGACC TTTGGAAGGA GTGTTTACAT GGTCATGCTC TTTGTTGATG TTGATGCTAT TGCTTTCTGT 000080
000081 TTGTTAATTT TCTTTCTAAC AGTCAGGCCC TTCTTCTGCT GGTCTGCTGG AGTTTTCTGG GGGTCCACTC CATACCCTGT 000160
000161 TTGCATGGGT ATCACCAGCA GAGGCTGCAG AACAGCAAAG ATTGCTGCCT CCTCCTACTT CTGGAAGCTG TGTCCCAGAG 000240
000241 GGGCACCTGC CAGATGCTAG CCAGAGCTCT CCTGTATGAA GTGTCTGTCG ACCCCTGTTG GGAGATGTCT CCCCATCAGG 000320
000321 AGGCATGGGG GTCAGGGACC CACTTGTGGA AGCAGTCTGT CCCTTAGCGG AGCTCCAGTG CTGTGCTAGG AGATCTGCTG 000400
000401 CTCTCTTCAG AGCTGGCAGG TGGGAATGTT TAAGTCTGCT GAAGCTGCGC TCACAGCTGC CCCTTCCCCC AGGTGCTCTG 000480
000481 TCCCCAGGAG ATGGGAGTTT TATCTATAAG CCCCTGACTA GGGCTACTGG CTTTCTTTCA GAGATGCCCT GCCCAGAGAG 000560
000561 GAGGAATCTA GAGAGGCAGT CTGGCTTCAG TGGCTTTGCA GCGCTGCAGT GGGCTCCACT CAGACTGAAC TTCCTGGCAG 000640
000641 CTTTGTTTAC ACTGTGAGGG GAAAACTGCC TACTCAAGCC TCAGTAATGG CAGATACCTC TCCCCCAACC AAGCTTGAGC 000720
000721 ATCCCAGGTC TACTTCAGAC TGCTGTGCTG GAAGTAAGAA TTTCAATCCA GTGGATCTTA GCTTTCTGGG CTCCATGGGG 000800
000801 GTGGGATCTA CTGATCAAGA CCACTTGGCT CCCTGGTTTC AGCCCCCTTT CCAGGGGAGT GAATGGTTCT GTCTCTCTGG 000880
000881 CATTCCAGAC AACTCTGGGG TACGAAAAAA ACTCCTACAG CTAGCTCAGT GTCTGCCCAA ATGGCCACTC AGTTTTGTGC 000960
000961 TTGAAATCCA GGGCCCTTGT GGTGTAGGCA CCCAAGGGAT CTCCTTGTCT GTGGATTGCG AAGACCATGG GAAAAGCGTA 001040
001041 GTATCTGGAC CGGAGTGCAC CCCCACTCAC GGCATGGTCC CTCATGGCTT CCCTTGGCTA GGGGAGGGAG TTCCCCAACC 001120
001121 CCTTGCACTT CCCAGGTGAG GCAATGCCCC ACCCTGCTTC TGCTTGCCCT CCGTGGGCTG CACCCACTGT CTAACCAGTC 001200
001201 CCAGTGAGAT GAACCGAGTA CCTCAGTTGG AAATGCAGAA ATCACCCACT TTCTGTGTTG GTCTTGCTGG GAGCTGCAGA 001280
001281 CAGCTGTTCC TATTCGGCCA TCTTGCCTGG GAATCTGTAA TTATATTTTA TTGCATATTC TTCCTAGGCT GGGTGTGTGT 001360
001361 GTGTGAAAGA GAGAGAGAAA CAGAAACAGA GACAAGGAGA CAGAGACAGT GAAACAGAAA CAGAGTCATC TTCCAGGTTC 001440
001441 TACTTATTAA GCAATATCCC ATGAAGTAGC TGAAAAGTGT TATATTCTCC TAATACCTAG TGTTTGCAAA TCTGGCAGCT 001520
001521 GTCACTGATG ATTTAAACAA GATTGGGTGA CTTATTTATG TACACACACA TCCACAATCA AACTTCAACA GTCGAGTGTA 001600
001601 CCCTTTTCTA AATAATCACG TTGCTAAAAT GTGCCACATG GCCCATTTCT TTAAACAATA AATGGTAAAT TATTATTTTG 001680
001681 GGGAGTGAAA GCTAAAAGAA ATAATATGTC TAATACGATG TGGCATTTTC TCTATACAGT ACAGTTTTAG CATTGAAAAG 001760
001761 GACCTCAGCA ATTCCATTTG CCCCGTTTTC AGATGAGGAG ATTGAGGCTG GTAGTTACAG TGGTTTTGCT TCATGTCCCA 001840
001841 TCCCACTGGG GCTGCTATGC AAGCTCTCAG TCTAGTCTTC TTTCCTCTGC ACTTGGTGGC CATCAGCTGT AACAAGTCCT 001920
001921 GACTAGACAA GGGCTTTGTT GTTGACTACA ATTCAATGCC TTTTTTGCCT GCGTTTGTTT GGACCCTGCT AATCAAGGCT 002000
002001 ACAGGGCAGC TGCAGAAAGA CACCTGCTAT TGGCTTACCT GCTCCTCGCC TTCCCTCTGC TTGGGTCTGA GCATCAGAAA 002080
002081 GCCACCTTCC AGTGGGTCTT TGCCTAGCTT TTGTCTTGTC TTTGCTTTTT ATTCATCTTT GCTTTTGTCT TCTCAGGGCA 002160
002161 AATAGGAAAT CCTAGACCTC AGATCACTGT TCTTTGCTTC CCAAAAGACA GAACAGCTCA GTCCTGGCTG CCACCTTCTT 002240
002241 TCTTTACTCT TGGTTTAAAT GTAATCCCAC ATGCCCTAGA CAAGCCTCCT GATGATTTTT CATCAAACAT GAAAATAGCT 002320
002321 TACTTTTAAC TGCTGGGTGT CAGTCTCTTC TAAAAATTTT GTTCCTAAGG AATTGATTTT GCAAATCAGT GCTAAAGTCA 002400
002401 CTTTTTAACT GCCTCACATA CTATCATTTC TTTGACAATT CTTTTTAAAG GGGATTGCTC TTTTCTCCTT CTGGTTTCTC 002480
002481 AAATCTACTT TTAACTTCAA ATAGCAGGCA TGCAATGTAG TTTTATAAGA TAATATACTA GGACCATCTA TCAGATATGA 002560
002561 AACCAAGCAT AATCATTGCA ATTATTTCTA CTGTATTCAG ATAATGATAA TACAAATAAG AGTACGACAT ACGTAAATGT 002640
002641 TGATTAGCTT TCTGGTTCCT TCATCAAAAC TTGCGTTGTG TTGTGCAGCC TTTTCTTTGC ATTGTCCAGG GGTTTTGTTA 002720
002721 TTACAAACCA TAATATTTAA CCCATTTCTT CTACTAATAT CTTTTAATAT TTATGCTATT ATATAGCTTT TTATTTTTGA 002800
002801 CATGTATCTA AACCAGAAAA AAATATTCCT TGTACATGAT ATTTTTAGGC AAAACATAAT GTCTGGAGCA CCAAGTGAAA 002880
002881 TAACTGTGGA GAATGGAATG TTGGACAATT TGTGTGGCAT GCTTAGCTTA ATTTGTTTCT ATGGCACAAG CAAAGCTCAT 002960
002961 TAATTCCATT TATTATTTTA AGCCACTTGT TTGGTGTTAT GGATTTTAAG AATCAGTTGG TGTTAGAATT TTTAATAACA 003040
003041 CAGAGAAAGC CATTGAATAT GGAACTCAAA TTATCTAAGG TTTACCCAGA AGTCAAAATC ACCTGGCCCT CTGTAAATTT 003120
003121 CTCTTTGTGT TCCTAGGCCC ACAAAGTCTT TGGTCTGAAG ACTCAGAGCT TAAATTGCAT TGGTCCTGTT AATCTTTGTC 003200
003201 AAAAAGGAAG TTTGGGCGGC AGTTTCAGGG TAGTGTTGAG AAGATAACTC CTGGTCCCAT TTTATTCTTT CCTCATTTGT 003280
003281 TCAGTGCTCA TGGCCATCTA CAACCTTCCT TGATTCTATT CTGCCTAAGC CTCTTATTTC CACATCTATA AGTATAGTGC 003360
003361 TACATAATAA TTACAACCTT TAAGAAAATG GAGAGTTTTC ATTAAAGGGC CCCTGCAAAT CTATGATGCT AGATGACAGA 003440
003441 TTCTACCAGA AGGCCAGAGT ATTAATAGCA CCCGTGATAA CTGTAATAAG AATATGTCTC GTTTTCTTTT AAAGACATAG 003520
003521 ATATTCCATT TTAATCCTGT ATAACTCAAA GAAAATTTGG GTGTTAACAC TTTGAAATAC CTTTACCTCC TTTGGGGGAA 003600
003601 ATCCAAACTG AAAGGAATTA ATATCCACAT CAGTTCCTAA AGCAAAATGC CTGACACAGA CTAACAAAGC TCTTTCTCAT 003680
003681 CCTGTGGTAG GAACTTAGGA GTGATAACTC ACATTGAGAA CTTGTGATCT GAAAGCACTA AGGAATTTCT GCCATTGCAG 003760
003761 GTAGGAAAAA AAAAGACAAA AATGGTATTC TCAGGTGAGC TTACCTTTCA AATTTTTCTG AGACTTCCTA AATGTGACAA 003840
003841 GAACTCTGCT GTGTGGCAAC CTTATGTATC CACAACAGAA CTAAGGACCG AAAAAAAAAA AAAAAAGATC TCTATCCCAA 003920
003921 TAGATTTTAT AAAATCCATA CTCTAAAACT CCTGAGTTTT ACATGTACCC TAAAACTTAA AGTATAGTAA AAAAAAGAAA 004000
004001 AGAAAGAAAA ACTCTTTAAC CCTTTGTTTA AATCCTATTA ACTCTTAACG ATACACAGTT CGAATTATCT AAATGAAATA 004080
004081 ATTTTCAAGC ACATAACAGA TTAGAAACAG AGAATGAGAA AGGTATAGTA GATATTATGT AAATAAGCAG AAATAATGGC 004160
004161 AATAATTAAA CACACTATCT CTACCTAAAA GAACAGAGAT AGAAAACTCA TATAAAAATC TAAACTACAG TTTTATGGGG 004240
004241 ATAGTTAAGG TAAGAGCCTG CAGGCAGCAC TGTATTGCTT TACAAAACAG CATTTCATTT GTATTATGAT GATTTCAGAC 004320
004321 TATCAATTTA AAAATTCATT AGTATAAATT AAGAACAGGT ACCATTTTCT CCAGATACTT CCCCTTCATC TGTCCTGAAA 004400
004401 TTATTAATTA TTGACTTCTA CTTAAATAAG ATCTTATTTT CATCTGCTGG AAAACTTTTT CTGATAACCA TACATATCTT 004480
004481 CAATGTCTAC AATTTGAATG GAGAGCCCTT TCAATGTGGC GTTTCTGTTT CTTCCATAAC CTCACAACGA TATGTGGTGG 004560
004561 CCCCGCAGTC ATTATGGTCT TGTTAAATAA TTAGATTTGT GTAAACTATA TTTTAGAGTC TTCCAAAACG CCTCTCCTTC 004640
004641 CAAAATGGCT AAAAGGGCAA AGCGTCAGTA ATTCTGTAGA CATGCTTCAT GCATGTTCTG AATAGGAGCT ATGGTATAAT 004720
004721 GAGATGCTAT CTCTGGAAAA AAATGAATAG ATTTTCAAGA TTGTGAGTCC TGACATGAGT TCTCTAGAAT TTTCCCCTTT 004800
004801 GATAAATTTT CCTTTACCTA GCTGTTGCCA AATTGTCTCT TCTAGAAGAA TGCCCAGATT TTTTTTCAGT TCCAAAGTTA 004880
004881 TCAAAATCCC AGGAATATTT CACAGAAAAG AGAAGCATTT ATAGCAAGCA TGGGTGTGGC ATGCTTTCTC TGTGGGAAGT 004960
004961 TGTCATCCTC CACAAGATCT TGCCCACACT CAAAACAAAC TTGCTTCCCA TCACATTCTT GGTTTGTCAG CACTCTGTAA 005040
005041 AAGGAAATCT CATCTCCTGT CTGTTGATAG TAGAGCTTAT ATCAAACTGG GACATGTTTC TTCTTCATTC ATGAATAAGT 005120
005121 CTAATTTTCT CTCCGGTGTG TAAAACTGAC AATACCCACA AGATACTACT GACTTGGAAG TTTCACTGCA GGTAGCTACC 005200
005201 ATACCAGCAT TTGGTAAACT AGCTCCCTAG GTGAGACAGC ATTAGATGAC CTCCTTCGTG CCACACTACT TGCCAGTATC 005280
005281 CACTGGGAGA CAAATTATGA TTGTTGCGTC CTTCTTTGAA AACACCCCTG CTGAGTACCT ACTGTATGTG AGTCACTGTG 005360
005361 CAGGCACTAG AAATATAAAG CAAAAAAAAC AGATTCTACC CACCGGGAGC TCCTAGTCCA GTGGTGAAGA GGTGTATTAA 005440
005441 CCCTCAAGGC CCTAAGAAAA TCCCCAATAG GGCTCTGCAC AAGCCGGGCT CTGATAGGAG GTGCCAGTGC TTTTCTTCTT 005520
005521 CCAGTTTCAG AGCCCCAGCG ATCCCAGGAT GAAGGAGAGC CCATTTGCAA CCCTCTTCTG TCTCCCTAAG CATTCAACAA 005600
005601 ACACTTAGTG ACCATCTGTC TTGTGCAAAA AGCTTGGGGA GTGATAAAAA CAAATCAAAT TCACATTTTA ATTTAGGGAG 005680
005681 TTTAGGAGAT ACATCCTAGT GTGGATTTCA CATGGTCAAT GATTTGCTTT CCTTGAATTT GCCCTCTGCA ACCAACACCT 005760
005761 GTTCGTGCTA TGAGACTGAA GTCCTCCTAG ACCGCCCCAT TCATCTGAGT AGTTAGGGCT CTGGATGAAG GAGCAAATGG 005840
005841 ACAAAATAAG CCCCCTCTTG CTCAGGACCT GACTAACATT TCAGAACTGC GGTCACCCAT TTTATACAAA CCAAAGCACT 005920
005921 TCTGACAGAC CTCTGAATTT GCATTAAAAA GAGCACGTCT ACAGCTCCTA ACAATCAAAA ACAACTATGA ACACTGCTTG 006000
006001 CTTCAGTGAT ACAAACAGAC ATTTTCTTGT TACATGTGTG GTGATCTGAG AATGGTGACT TTGGACCCAG TTTGACTGGT 006080
006081 TAGCGTTTAA ATAAAACTTA ACAGACTAGG CAACTAAAGG AACTCAGTAA AAGATCAAAA GCAATGCTCA AAGGGAGTGC 006160
006161 CTGGGTAACC ATGATGTAAT TGCAGATTGA CACATCTTTG GGTTTTTCAT TATTGTTTCT AAAAACTAGA TATTATTGCT 006240
006241 TTATTATTAT GTTGATGATG ATTATTGAAA GCACGATAGC AATGTTTAAG TGGTGAGAAT GACTCTAAGC CTCTTTTTGT 006320
006321 TGCTGTGACT GACAGAACTA AAGGGAGTTT GCTCTCACAT TCACAATACC AACTCTGCCA TCTTATGGAA AATATTGGAA 006400
006401 GTACCTAGGG CATTTCATTA TATTTCAAAG GCACAGGTTG CTGGTAAGAG GGACAGAAAG ACAAGAACAT AGTACCTTCT 006480
006481 ATTTCTACTA CATGTTTTTA ATCTTTAACA TTTTTACCAG CAGAAATCAT TTTTTTTTTA AATCTCTCAA TCTTCAAATA 006560
006561 ATTCTTAGAT TGCTTGCCAG CAAAGATGTC TCTTGATCTT GACACTGGAA TTCAATGTAA AAATCTTGAA TGATATTTTG 006640
006641 TACTGATATG AATTTCTACT GTCCCATAAC ACTGTGTAGT GACTTCACTG TATATTAACT TCTTTTCTAC AGATGTTTGA 006720
006721 CTTATGAGAT GAATTAATTG AAAAAGTCAA AGCCTATCAG GAGCTATCTT ATATGATGTT GGTAGCCTGT GAAAAAATAA 006800
006801 ATGTCTTTTT TCTTATACAA ACTGATAACA AGACTTGCTT TCACAATTAC TATTTACATT TTTGTGCATA TAATGCCTGT 006880
006881 ATATTATACT CATATTTGAA AGTGATCAGA AAGTGTTATT TAACAGAAAC TACATACATT TTTTATGTCT CTCTGGACCC 006960
006961 TTTGATTCTA AGTAAATTTA CAGTAAGTTA GCAGTAATAG ACTATTCTTT TCAACTATGA ATAAAAATGT ACACTGAAGT 007040
007041 AAAAAAAAAA AAAAAA