NONHSAT001141
Revision as of 19:16, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT001141 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1160 nt |
Genomic location |
chr1-:16888923..16890082 |
Exon number |
1 |
Exons |
16888923..16890082 |
Genome context |
|
Sequence |
000001 GTTTAGCTCA TCCAAAGGTG TTACCCTGGT TTCAATGAAC CTAACCTCAT TCTTTGTATC TTCAGTGTTG AATTGTTTTA 000080
000081 GCTGATCCAT CTTTAACACA GGAGGGATCC TTGGCTGAGG ATTGTATTTC AGAACCACCA ACTGCTCTTG ACAATTGTTA 000160 000161 ACCCGCTAGG CTCCTTTGGT TAGAGAAGCC ACAGTCCTTC AGCCTCCAAT TGGTGTCAGT ACTTAGGAAG ACCACAGCTA 000240 000241 GATGGACAAA CAGCATTGGG AGGCCTTAGC CCTGCTCCTC TCGATTCCAT CCTGTAGAGA ACAGGAGTCA GGAGCCGCTG 000320 000321 GCAGGAGACA GCATGTCACC CAGGACTCTG CCGGTGCAGA ATATGAACAA CGCCATGTTC TTGCAGAAAA CGCTTAGCCT 000400 000401 GAGTTTCATA GGAGGTAATT ACCAGACAAC TGCAGAATGT AGAACACTGA GCAGGACAAC TGACCTGTCT CCTTCACATA 000480 000481 GTCCATATCA CCACAAATCA CACAACAAAA AGGAGAAGAG ATATTTTGGG TTCAAAAAAA GTAAAAAGAT AATATAGCTG 000560 000561 CATTTCTTTA GTTATTTTGA ACCCCAAATA TTTCCTCATC TTTTTGTTGT TGTCATTGAT GGTGGTGACA TGGACTTGTT 000640 000641 TATAGAGGAC AGGTCAGCTC TCTGGCTCAA TGATCTACAT TCTGAAGTTG TCTGAAAATG TCTTCATGAT TAAATTCAGC 000720 000721 CTAAACGTTT TGCCGGGAAC ACTGCAGAGA CAATGCTGTG AGTTTCCAAC CTTAGCCCAT CTGCGGGCAG AGAAGGTCTA 000800 000801 GTTTGTCCAT CAGCATTATC ATGATATCAG GACTGGTTAC TTGGTTAAGG AGGGGTCTAG GAGATCTGTC CCTTTTAGAG 000880 000881 ACACCTTACT TATAATGAAG TATTTGGGAG GGTGGTTTTC AAAATTAGAA ATGTCCTGTA TTCCAATGAT CATCCTGTAA 000960 000961 ACATTTTATC ATTTATTAAT CATCCCTGCC TGTGTCTATT ATTATATTCA TATCTCTACG CTGGAAACTT TCTGCCTCAA 001040 001041 TGTTTACTGT GCCTTTGTTT TTGCTAGTGT GTGTTGTTGA AAAAAAAAAC ATTCTCTGCC TGAGTTTTAA TTTTTGTCCA 001120 001121 AAGTTATTTT AATCTATACA ATTAAAAGCT TTTGCCTATC |
Predicted Small Protein
Name | NONHSAT001141_smProtein_332:556 |
Length | 75 |
Molecular weight | 8558.7706 |
Aromaticity | 0.0945945945946 |
Instability index | 65.3472972973 |
Isoelectric point | 10.2963256836 |
Runs | 11 |
Runs residual | 0.00599868160844 |
Runs probability | 0.0362367715309 |
Amino acid sequence | MSPRTLPVQNMNNAMFLQKTLSLSFIGGNYQTTAECRTLSRTTDLSPSHSPYHHKSHNKK EKRYFGFKKSKKII |
Secondary structure | LLLLLLLLLLHHHHHHHHHHHLEEEELLLLLLLLEEEEEEEELLLLLLLLLLLLLLLLLL LEEEEEEEELLEEL |
PRMN | - |
PiMo | - |