NONHSAT011556
Revision as of 15:43, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011556 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4270 nt |
Genomic location |
chr10-:14916396..14920665 |
Exon number |
1 |
Exons |
14916396..14920665 |
Genome context |
|
Sequence |
000001 GGCGAGCGCG CGTGCTCCCG GATCCTCGGC AGTGTCCGGC GCCCCCTTCC CTTCGCCAGG CCCGTTTGGC GCCTTCACTC 000080
000081 GGGAAGACGT CGGCCAGGAC TTTGCGCTTT GGAGACGTCT TACTTCGGCA GCACTCGCAC ACTGCGAGAT CCGACACGGG 000160 000161 CAGCGGGGAC CTAGGGAGCC GGGGACGCTG CCTGTCGGGT ACGGTTCCGC AGCTACCGCA GCCCCGTGGG CCATGGTTAG 000240 000241 TCTCCCCCCG ACACCGCTCC CTCTAGAGCT CCGGGCTTCG GAAGCGGCTG CACGTGGGCA TGGCTGGAGA GGTTCCGCTG 000320 000321 GCTTGGGGCA GTCGCCGGGA TTCCGACTGG TTGGTGTGGG GTGTGGCCTG TGCTATCCAG CTCCCAGCTG ATCCTAATGT 000400 000401 GCGGCACAGC GGAAACCACC GGTCCACATC AGTGCTTCTC ACTTAAAGGG GCTTACGAAT CGTCGGGGGT GGGGGAGCTG 000480 000481 GACTTGGAAt tttttaagag atgaggtctc actctgtcac ccaggctgga gtgcagtggc gcgattacgg ctcactgcag 000560 000561 actagacctc ctgggctcaa CTTTAATGTA AATTGGGATT GGGTAGGTCT GTAAGGGGAC CCGAGCTCCC CTCCCATGTT 000640 000641 GTTGCCAAGC TCCTGAGCTC GGCCTGGTGG CGGGTGGGGG CCGGGAGGAG AAGGACACGT TAGTAAGGAA GCTGCAGGAC 000720 000721 GACTCCAGGG GCCTCCCACC TGGTCTCCAC CCCCCTCCCC CACCCATTCT TGACGCTGCA TCCATGATTG TTCTAAACAA 000800 000801 CCTAAAGCAG AAATCTTAGA GCAAATAACG AAAACTGGCA GAAGGCCATT TGATATCTCC TTAAAAAATT CATGTAAAAA 000880 000881 ATTACATAAA CGTTTCAAAG CAGTATGTAT AAATTTGAAA TACTGGAAAT GAACGCAGAC CATTAAAGGA ATAGTTAATT 000960 000961 ATTTGATTCC ATTATGAAAT ACTGTCTAGC CGTCTTAAAA AGGTGTTCAT GAAGCTTTTA GTATTCAGCA AAACCAAAAC 001040 001041 AAATCCCCCT GAAATATAGT TTTAACTATG GAAGAAAAAA ATGTATAGGA AAATAACGAA ATAGCCTTTT CGGAGTGATT 001120 001121 TTCTTTTTAA CTTCTCGTTT TTAAATATTT AATCATTTTC TACGATGGGA AACACCACTT CCTCACACAC ACTCATGCTC 001200 001201 CCAGACTTTA TTTAGCTACA AACGGCATCA TAATACAAAT ACTGTTCTGC AGTCCGTGTG TGTTTCAATG CAACTGCATT 001280 001281 TCTCAGACAT GTTTCTAAGA TTTGAGTCCT TAGTAAATTT TGTATTCCAT ATCTCATTAC CTTGAGATAA GGAATAAAAG 001360 001361 GCCCTGTCCA ACCCTGTCAC CTGGAAGAGC ATCCAGGCCC TTTAAGGCTT AGTCTATCTA GGATTATGCC TTCAGACTTG 001440 001441 GATACAGCCT CCCGTCCTAA CCGGCCCCTG TATTCATTAC CTCTCCTGTA TGTTTTCAGA GCCCACCAAG GAGCGGCCAT 001520 001521 CGCTActcac tggccactct tgaatccttt ttggctcctt ttcctcagtc caacctgggt tcctcagaga agagactgta 001600 001601 gtcctgggac tgcatttctt ttccgccctc tccctatgtg actgccccaa ttcccatgga tttaaatagc atcttgacac 001680 001681 acaagatgcc tcacttatcg tctccggccc tggcctctgc ctgaattcca ggctagaata tccacagtgc gtaatggaca 001760 001761 tatgccctta ggtgttgcac aaacatctca aattgaacat atccggaaaa atacacttct gaacttcGTA Gcattcagaa 001840 001841 taaaactcaa acctccagat ggccggcagg gcctccagtg atgggaatcc tgtctcacct cacttggtgc cactctcccc 001920 001921 tttactcatt ttcctggcct ttccccggcc ccacttaccc agaaatcttt tactgtgcat ctcctatgtg ccaggcacct 002000 002001 gataggtgct gggaatatag cagtggatga gaaagaaaaa agacccagtc ctcatggagc tgacttccta gtgacaggag 002080 002081 cagcggataa agcaaatCAC TGAAGGCAGC TGGAAATTAC TTTCCGGTTA AGAGGACAGG CTCCTTCCCC TCCTCACATG 002160 002161 GCTACCTTCA GATCACTTGG GTCTCAGCTT AAACACCACC TATTGACAGA GGCCTCGCAT GTTACCTCAT TCTTTAGCCC 002240 002241 TACTTTGCAT CCTTAAAAAG CACTCATCAA AATTTGCAAT TATCTTGTCG GGTTTTTGTT CTTTGGTCTT GATTCATAAT 002320 002321 GAATGCATCG CACTATTTTG TAAATCCAGT GTTTCGTTTC GTGTCTTGAA TCCCATCCAT TCCAGCGCAT AGATGAGGCC 002400 002401 CTGTCTGTTC AACATTCATC ACCGTGTTTA CTATCTAGAG cagcaattct caaagtatgg taattgggac ccgaagactc 002480 002481 ttcacagggt tcatgagcgc aaaactattt tcagaccaac atgttctctg ccttccttcg ctcatgagta catagtggaa 002560 002561 ttttctagag gttacacaat ttgaatattg caacacattg aacgaagacg caggtaccag aacatagcta tctcctatta 002640 002641 agccagacat taaagagatt tgaaaaaata caaaatactg cttttggcta ggcaaagtgg ctcgcacgta taatcttggc 002720 002721 actttgggag gctgaggaat tgctagagac cagccagggc aaccctacta aaaaattagc tgggcgtggt ggcacatgcc 002800 002801 tggggtccca gctactcagg aagctgaggt gggaggatcg cttgagccca ggagtttgag ggtgtagtga gctatgatca 002880 002881 aaccactaca ttgcagcctg ggcaacagag caagaccctg tctcaagaca aaaaacaaaa aataaaaccc cagataccac 002960 002961 ccttgccact aattttttgt cttagaaaaa ttatttctca taaaaaatta actttattac ttagaaataa tttttaaaat 003040 003041 tggttttaat ttccatatgg taactatagt tatataacta cattttatgt atatgtaaca aacaaaagct ctatgggttc 003120 003121 tcaacatgtt attttttaag actataaagg gttcctggga ctaaaatgtt tgagGGTGTT GGTAAATCCT GGCTATAAAT 003200 003201 GGAGAGAGAA ATAAAAAGCC ACTGAGAGAC ACACACCAGG GTCCTCAAGG GAAAAGTAGA GAATCATGAC CCTTTCCCAG 003280 003281 TATTTTTTTC ACAAAGACCA CATGATTTCT GGAGTGTCTC CTCTTCTACT GAAATAAACG TTCTCTTCTG AGAGGCAAAG 003360 003361 AATCATAGAA TGAACACTAG ATTAAGAAtg tgaatttaaa tgaaataatc catgtaatgt gcttaaaata gtAAGCAGTC 003440 003441 AAGAAAAATT AAGTTTACAA AATAAGCatc tgaatgttag ttcaaaatcc accatttatt cactgtgaga ccttggatac 003520 003521 tttatttaac tgctgtgaat ctattatctg gaaaacagaa ataaccaagg ccatattact ctctacatag tacaactact 003600 003601 cgtggaattg tgatgagatc aaaattttaa aatgagataa tgaattaaag caaataacaG TATTATATGG TCACTCATTA 003680 003681 TCATTTTAGA TATTGTGATT TTTCCCATAG AACTTTTATG CTAGGATACT TTTAAGAATT CTTATACATA TAAAAGCTTT 003760 003761 CAGTTTGTGA TGAATATTTT GTGACCTCCt gttaaggact gaacgttttc atctctgaaa aattccagtg ttgaaatcct 003840 003841 cgcccccaaa gtgattatat tgggaggtgg ggcctttggg aggtgattaa atcatgaagg tggaggctgc atgcatggga 003920 003921 ttgacaccct tacaagaggg acccttcaga gctctctcgc cctctatcct ccgtgtgagg ttataaggat agctggcaac 004000 004001 ccaaaaggga gccctcatca gaacccggcc ccgcttccag cctggtccag cacccgaact gacttccagc ctccagaact 004080 004081 atgatacatt tctgatgttt acaagccacc ccccagacta tggtacttta ttatagcagt ccaaactaag acaCGTTCCA 004160 004161 AGACTTTCAC ATCATAGGTA TTTCTTCCTA TTTTTATATT TGGCTCTGTT CTTCAGACAA TGTCAGATGT AAATAGGCAA 004240 004241 AACTATAATT TGACATAAGC TTTTAGTGGT |
Predicted Small Protein
Name | NONHSAT011556_smProtein_1880:2029 |
Length | 50 |
Molecular weight | 5648.3847 |
Aromaticity | 0.204081632653 |
Instability index | 64.5634693878 |
Isoelectric point | 5.26483154297 |
Runs | 7 |
Runs residual | 0.019194704909 |
Runs probability | 0.0225729931613 |
Amino acid sequence | MGILSHLTWCHSPLYSFSWPFPGPTYPEIFYCASPMCQAPDRCWEYSSG |
Secondary structure | LLHHHHLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLEEELLL |
PRMN | - |
PiMo | - |