Difference between revisions of "NONHSAT016991"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
 
Line 42: Line 42:
 
sequence = <dnaseq>TTAATTATTTCACAAAAAGGCATAAAATAAAAGTTTTTTGAAAAAGTAGGATGCAATTGCCTATGAAATCAGTTTCCCAGTAAAATATTTAATTCTCTGAGAGCTGGCATATTTTGAGTCCGGATCAATCAGATTCTCAAAATAGCTTTCATGGGAAGCACTGTGACATCACTTGTCTCCATTTTATCTTCTTTCTCTCTAGTTCCCAGCCCATGGCACCCATTTCCATGATTTCAAATATTATCTGTGTGCTAGTGGCCCCGCATTTTATTTCCAGTCTGTGCTTTCCTTTTACTTGTGATCTCTACTTGGATATCTCAACATAAATTTTACACGTGCAAAATGGACCTTTGGAATCCCCTGCCGTTCCCCCAAACTCTGTAGTTCCAACCCCTTTTTTCCACCCATAAGAACAGAATCCAGCCGGTTTCTCGAGCTGAAAACCCAGGTGTCTTCCTTGATTGCGTCTTTGCGC</dnaseq>|
 
sequence = <dnaseq>TTAATTATTTCACAAAAAGGCATAAAATAAAAGTTTTTTGAAAAAGTAGGATGCAATTGCCTATGAAATCAGTTTCCCAGTAAAATATTTAATTCTCTGAGAGCTGGCATATTTTGAGTCCGGATCAATCAGATTCTCAAAATAGCTTTCATGGGAAGCACTGTGACATCACTTGTCTCCATTTTATCTTCTTTCTCTCTAGTTCCCAGCCCATGGCACCCATTTCCATGATTTCAAATATTATCTGTGTGCTAGTGGCCCCGCATTTTATTTCCAGTCTGTGCTTTCCTTTTACTTGTGATCTCTACTTGGATATCTCAACATAAATTTTACACGTGCAAAATGGACCTTTGGAATCCCCTGCCGTTCCCCCAAACTCTGTAGTTCCAACCCCTTTTTTCCACCCATAAGAACAGAATCCAGCCGGTTTCTCGAGCTGAAAACCCAGGTGTCTTCCTTGATTGCGTCTTTGCGC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:Transcripts]]

Latest revision as of 20:21, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT016991

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

475 nt

Genomic location

chr10+:130966505..130979976

Exon number

2

Exons

130966505..130966587,130979585..130979976

Genome context

Sequence
000001 TTAATTATTT CACAAAAAGG CATAAAATAA AAGTTTTTTG AAAAAGTAGG ATGCAATTGC CTATGAAATC AGTTTCCCAG 000080
000081 TAAAATATTT AATTCTCTGA GAGCTGGCAT ATTTTGAGTC CGGATCAATC AGATTCTCAA AATAGCTTTC ATGGGAAGCA 000160
000161 CTGTGACATC ACTTGTCTCC ATTTTATCTT CTTTCTCTCT AGTTCCCAGC CCATGGCACC CATTTCCATG ATTTCAAATA 000240
000241 TTATCTGTGT GCTAGTGGCC CCGCATTTTA TTTCCAGTCT GTGCTTTCCT TTTACTTGTG ATCTCTACTT GGATATCTCA 000320
000321 ACATAAATTT TACACGTGCA AAATGGACCT TTGGAATCCC CTGCCGTTCC CCCAAACTCT GTAGTTCCAA CCCCTTTTTT 000400
000401 CCACCCATAA GAACAGAATC CAGCCGGTTT CTCGAGCTGA AAACCCAGGT GTCTTCCTTG ATTGCGTCTT TGCGC
[back to top]

Predicted Small Protein

Name NONHSAT016991_smProtein_212:325
Length 38
Molecular weight 4076.881
Aromaticity 0.108108108108
Instability index 51.3324324324
Isoelectric point 4.19598388672
Runs 5
Runs residual 0.0446317877511
Runs probability 0.0162338809398
Amino acid sequence MAPISMISNIICVLVAPHFISSLCFPFTCDLYLDIST
Secondary structure LLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLEELLLL
PRMN LLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL
PiMo oooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii