NONHSAT018501
Revision as of 20:28, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018501 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1168 nt |
Genomic location |
chr11+:27529711..27530878 |
Exon number |
1 |
Exons |
27529711..27530878 |
Genome context |
|
Sequence |
000001 gctgggatta caggcgtggg ccactgtgcc aggcTCCAAA TCTTCATTTG TGTTGTTCTT GTGTGGAATG CCCTTCTTCA 000080
000081 TCCCTTCCTA GTCTCCAAAC TTTGTACACA CTCAGTTGAA CCCATTTCGT GGGTCCCTGC TGAAGGCATG CCACTTCTAC 000160 000161 CAAGCCTTTT CTCCATATTA TTCCCCTTTT TTGTCCTCTG ATGGCCTAAA TACGTTGCAG TAACACTCAG GTGCTTATCT 000240 000241 CTTACTCGTT GTCATTTTTT TTTGCTGCAA ATGTGttcaa gaaatgttta ttaaacacct aatatatacc aggtgccttg 000320 000321 ataggaatac caggtagagc aagacaAATG CAAACATTgc ccttatttct tcaaatattt tttctttcca ttctcttgct 000400 000401 cctctccttt ggtgtgacta ttggagtcat gtgcatgtac ataatataca tgtatattga actaactggc attgtctcac 000480 000481 agctcagtga cgctctgttc attttttttt caagattttc tttatgtttc cttttggata attgctatgt tttcatattc 000560 000561 attaatcttt tttcaatatc taatattgaa atcctgtcca gttcattctt catataaaac attgtagttg ttgcctctac 000640 000641 cagtttgatt tgggtgtggg tgtgtgtctt acatctttta tgtcttaaca tgctcaactt ttctgcagct tcttaaacac 000720 000721 atagactaca attataatga cagttttaat atccttgtct actaattcta tgatctatgc tatttctggc atagtttcta 000800 000801 ttgattgatt tttctcttca ttacagttca taatttcctg cttcttgcat gcctggaaat tttttttttt ttaacaagat 000880 000881 gctagacttt gtaaaattta cttacttgaa aaacaatttt gttcttttgg gttttgattt tttttaggtg gaaccaattc 000960 000961 agtcatttat gtagggttaa ttgtatccca ctactaagac agtacccttc aaagttcctt accccatacc caaagtgaat 001040 001041 tatgtggttt ttctactttg gtaggaacgg gaactattct tagGAACTGA GTTTGTGGAC TTTTTTTTTG CTCTTTTCCT 001120 001121 TTCCCTGTCT GGTAATTTAT ttcttcttct ttcttccttc tccttctt |
Predicted Small Protein
Name | NONHSAT018501_smProtein_347:616 |
Length | 90 |
Molecular weight | 10328.3989 |
Aromaticity | 0.202247191011 |
Instability index | 54.608988764 |
Isoelectric point | 3.91632080078 |
Runs | 14 |
Runs residual | 0.0141000220313 |
Runs probability | 0.0279481161834 |
Amino acid sequence | MQTLPLFLQIFFLSILLLLSFGVTIGVMCMYIIYMYIELTGIVSQLSDALFIFFSRFSLC FLLDNCYVFIFINLFSISNIEILSSSFFI |
Secondary structure | LLLHHHHHHHHHHHHHHHHHLLLEEHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHH HHHLLLEEEEEEELLLLLLEEEEELLEEL |
PRMN | LLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHHHHH HHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | oooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiTTTTTTT TTTTTTTTTTTTTTTTTTooooooooooo |