Difference between revisions of "NONHSAT022872"

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sequence = <dnaseq>AAAGTTTGCAAATTTTCATATGAGCATCTGGACAACTTTTTTAAAGACCTACAAAACGTTCAAAACACTGGTGAAAAAGAAGTACAGAATAGAGAGAAATTTTGATCAGGCACTTACTCTGAAAAGCACAACACTGTGTCTGTGTCTCAGTGATGTGGTCACACAACCAAAACAACCCAACTGTGGTTTTCTTCTCAGTATCTTACACTGTGAAAGCCTTCTTGATTTGGAACCTGTGACTTGCAGCAGAGTTCTAAACAAGAATTGTATATTGCTTGTTTCATGGCTCCTCTCACCAATGAATCCAAATCCATCAGAGTAGAGCTCCTCAGCATATTAGACCAGTTATCCAGAAGTCATCCCCAGAAGTCATATCCCCGTTTCTTTTACTTTCCAAAGGTACAAGATCTCAAAAACTGTCAAGATATATTTCACCATTGTTATTCTTGCTATATTATTATTATGTCTTGGAGTTATGATCCTTGAAGTAATTCATGCTTCACATGTGCTTACAATGTTGAATGATGGGATGAGAGAAATCTTTTCCATTTGATAAAATAAAACCACAAGGAGGGTTTGCTTGTGTCGTATGGGTGCCCATAAAGCATTGAAAATATTAAGGAGCAAAGTGGATTTGCAGGATTTCTGTGGATATGTCACTATGCTGTACCATCTCATCAACGCAAACAGAAAGTGTGGTGATGCTTCTGATGAAAAAGGAAAACCTGATTTGACTTCCTGCTTTGAGCAGATGAGAGGACAGAGTCATTTGAAATGGTCATTGAGGAAGCAACCACAGATTCAACAACATAACAGAAATCTTAGGTTGCTACAACAGAAACAGACTGGGTTCCTCTTGAGCTATGCTTGTAATTCCACTGTTTAGCTCTGAATTCAATGAGTTTGTAGGAAAACAGTCACACTACAAACCTTGCAGAAAAGAAAGCCTTCAAAAACTCTTACTTTCCAGTAGAAAACTATATATGTTCTTAACTTTATTCACTCATTCTAGGAAGTTGCTTTAACACTAGATATTCACATTCAGGCTGGTTTTTCCAGTTTTCTTTACCTAAATCTTAAGTTCTACTTCTTGAAAAGAATGTAATGTGTAGAGATGGCATCTTATCAGAATGGAGAGATGGTCACCTTCCTCACTTCTCTCTGCTAATCTTCATTGGTA</dnaseq>|
 
sequence = <dnaseq>AAAGTTTGCAAATTTTCATATGAGCATCTGGACAACTTTTTTAAAGACCTACAAAACGTTCAAAACACTGGTGAAAAAGAAGTACAGAATAGAGAGAAATTTTGATCAGGCACTTACTCTGAAAAGCACAACACTGTGTCTGTGTCTCAGTGATGTGGTCACACAACCAAAACAACCCAACTGTGGTTTTCTTCTCAGTATCTTACACTGTGAAAGCCTTCTTGATTTGGAACCTGTGACTTGCAGCAGAGTTCTAAACAAGAATTGTATATTGCTTGTTTCATGGCTCCTCTCACCAATGAATCCAAATCCATCAGAGTAGAGCTCCTCAGCATATTAGACCAGTTATCCAGAAGTCATCCCCAGAAGTCATATCCCCGTTTCTTTTACTTTCCAAAGGTACAAGATCTCAAAAACTGTCAAGATATATTTCACCATTGTTATTCTTGCTATATTATTATTATGTCTTGGAGTTATGATCCTTGAAGTAATTCATGCTTCACATGTGCTTACAATGTTGAATGATGGGATGAGAGAAATCTTTTCCATTTGATAAAATAAAACCACAAGGAGGGTTTGCTTGTGTCGTATGGGTGCCCATAAAGCATTGAAAATATTAAGGAGCAAAGTGGATTTGCAGGATTTCTGTGGATATGTCACTATGCTGTACCATCTCATCAACGCAAACAGAAAGTGTGGTGATGCTTCTGATGAAAAAGGAAAACCTGATTTGACTTCCTGCTTTGAGCAGATGAGAGGACAGAGTCATTTGAAATGGTCATTGAGGAAGCAACCACAGATTCAACAACATAACAGAAATCTTAGGTTGCTACAACAGAAACAGACTGGGTTCCTCTTGAGCTATGCTTGTAATTCCACTGTTTAGCTCTGAATTCAATGAGTTTGTAGGAAAACAGTCACACTACAAACCTTGCAGAAAAGAAAGCCTTCAAAAACTCTTACTTTCCAGTAGAAAACTATATATGTTCTTAACTTTATTCACTCATTCTAGGAAGTTGCTTTAACACTAGATATTCACATTCAGGCTGGTTTTTCCAGTTTTCTTTACCTAAATCTTAAGTTCTACTTCTTGAAAAGAATGTAATGTGTAGAGATGGCATCTTATCAGAATGGAGAGATGGTCACCTTCCTCACTTCTCTCTGCTAATCTTCATTGGTA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG009042]][[Category:Transcripts]]

Latest revision as of 20:39, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT022872

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1180 nt

Genomic location

chr11-:73706017..73707196

Exon number

1

Exons

73706017..73707196

Genome context

Sequence
000001 AAAGTTTGCA AATTTTCATA TGAGCATCTG GACAACTTTT TTAAAGACCT ACAAAACGTT CAAAACACTG GTGAAAAAGA 000080
000081 AGTACAGAAT AGAGAGAAAT TTTGATCAGG CACTTACTCT GAAAAGCACA ACACTGTGTC TGTGTCTCAG TGATGTGGTC 000160
000161 ACACAACCAA AACAACCCAA CTGTGGTTTT CTTCTCAGTA TCTTACACTG TGAAAGCCTT CTTGATTTGG AACCTGTGAC 000240
000241 TTGCAGCAGA GTTCTAAACA AGAATTGTAT ATTGCTTGTT TCATGGCTCC TCTCACCAAT GAATCCAAAT CCATCAGAGT 000320
000321 AGAGCTCCTC AGCATATTAG ACCAGTTATC CAGAAGTCAT CCCCAGAAGT CATATCCCCG TTTCTTTTAC TTTCCAAAGG 000400
000401 TACAAGATCT CAAAAACTGT CAAGATATAT TTCACCATTG TTATTCTTGC TATATTATTA TTATGTCTTG GAGTTATGAT 000480
000481 CCTTGAAGTA ATTCATGCTT CACATGTGCT TACAATGTTG AATGATGGGA TGAGAGAAAT CTTTTCCATT TGATAAAATA 000560
000561 AAACCACAAG GAGGGTTTGC TTGTGTCGTA TGGGTGCCCA TAAAGCATTG AAAATATTAA GGAGCAAAGT GGATTTGCAG 000640
000641 GATTTCTGTG GATATGTCAC TATGCTGTAC CATCTCATCA ACGCAAACAG AAAGTGTGGT GATGCTTCTG ATGAAAAAGG 000720
000721 AAAACCTGAT TTGACTTCCT GCTTTGAGCA GATGAGAGGA CAGAGTCATT TGAAATGGTC ATTGAGGAAG CAACCACAGA 000800
000801 TTCAACAACA TAACAGAAAT CTTAGGTTGC TACAACAGAA ACAGACTGGG TTCCTCTTGA GCTATGCTTG TAATTCCACT 000880
000881 GTTTAGCTCT GAATTCAATG AGTTTGTAGG AAAACAGTCA CACTACAAAC CTTGCAGAAA AGAAAGCCTT CAAAAACTCT 000960
000961 TACTTTCCAG TAGAAAACTA TATATGTTCT TAACTTTATT CACTCATTCT AGGAAGTTGC TTTAACACTA GATATTCACA 001040
001041 TTCAGGCTGG TTTTTCCAGT TTTCTTTACC TAAATCTTAA GTTCTACTTC TTGAAAAGAA TGTAATGTGT AGAGATGGCA 001120
001121 TCTTATCAGA ATGGAGAGAT GGTCACCTTC CTCACTTCTC TCTGCTAATC TTCATTGGTA
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Predicted Small Protein

Name NONHSAT022872_smProtein_863:1024
Length 54
Molecular weight 6334.5219
Aromaticity 0.132075471698
Instability index 55.7
Isoelectric point 10.012878418
Runs 7
Runs residual 0.0281868384722
Runs probability 0.0390264213795
Amino acid sequence MLVIPLFSSEFNEFVGKQSHYKPCRKESLQKLLLSSRKLYMFLTLFTHSRKLL
Secondary structure LEEEELLLLHHHHHLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLL
PRMN -
PiMo -