Difference between revisions of "NONHSAT024869"

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sequence = <dnaseq>GGTAACTGAATTCACCCGGTCTCCCTTCCTGCTGTCCAGGAGCTTCAGATTTGGCTATGTGTCCTTCTCTGGCTGGTTCATATGCTCACCATAACAGGAAACCTTTTCGTCATTTTCTTAACGTGGACAGATAATTGTCTCCAAACCCCAATGGACTTGTTCCTTAGAAAAAAGTCATATCGTTCTCTGGCTGCATCACCCAAATATATTTCTACTTCTTTCTAGGGACAGTGGCGTTTATCCCCTTGGCAGTGACATCCTTCAAACACTGCATGGCAACCTGTGACCCCCTGTGCAGCACCATCATTGCAAAAAGCAGGGCCTGCCTCCTGCTGGCTCTGGGATGCTGGATGGGAACCTTCCTGGCTGTGTTGCGCCTGACTATTGTGGTGTCCAGGTTGCCAGACTGTACTGAAAAAATTAGTCCCTTCTTCTGTGACATTGCCTCTTTACTGCAGGTGGCCTGTATTGATATTCATTTCATTGAGATGATAAGCTTCCTTTGATCATCTCTTATGGTCCTGACCTCGCTGGTGCTTAATGCCACATCCTACGCCTACATCATTTCTCCCTCCTGTGCATCCCCTCAGCCCAAGGATGTCAGGAGGCCTTTTCCACCTGTGCTTCACACATCACCATCATCTTTATTGCCTGCCGAAACTCCATCTCCACGTGTGTGAGGCCTAACCCGAGGTATTAG</dnaseq>|
 
sequence = <dnaseq>GGTAACTGAATTCACCCGGTCTCCCTTCCTGCTGTCCAGGAGCTTCAGATTTGGCTATGTGTCCTTCTCTGGCTGGTTCATATGCTCACCATAACAGGAAACCTTTTCGTCATTTTCTTAACGTGGACAGATAATTGTCTCCAAACCCCAATGGACTTGTTCCTTAGAAAAAAGTCATATCGTTCTCTGGCTGCATCACCCAAATATATTTCTACTTCTTTCTAGGGACAGTGGCGTTTATCCCCTTGGCAGTGACATCCTTCAAACACTGCATGGCAACCTGTGACCCCCTGTGCAGCACCATCATTGCAAAAAGCAGGGCCTGCCTCCTGCTGGCTCTGGGATGCTGGATGGGAACCTTCCTGGCTGTGTTGCGCCTGACTATTGTGGTGTCCAGGTTGCCAGACTGTACTGAAAAAATTAGTCCCTTCTTCTGTGACATTGCCTCTTTACTGCAGGTGGCCTGTATTGATATTCATTTCATTGAGATGATAAGCTTCCTTTGATCATCTCTTATGGTCCTGACCTCGCTGGTGCTTAATGCCACATCCTACGCCTACATCATTTCTCCCTCCTGTGCATCCCCTCAGCCCAAGGATGTCAGGAGGCCTTTTCCACCTGTGCTTCACACATCACCATCATCTTTATTGCCTGCCGAAACTCCATCTCCACGTGTGTGAGGCCTAACCCGAGGTATTAG</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG009918]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:NONHSAG009918]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 20:48, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT024869

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

700 nt

Genomic location

chr11-:123732530..123733229

Exon number

1

Exons

123732530..123733229

Genome context

Sequence
000001 GGTAACTGAA TTCACCCGGT CTCCCTTCCT GCTGTCCAGG AGCTTCAGAT TTGGCTATGT GTCCTTCTCT GGCTGGTTCA 000080
000081 TATGCTCACC ATAACAGGAA ACCTTTTCGT CATTTTCTTA ACGTGGACAG ATAATTGTCT CCAAACCCCA ATGGACTTGT 000160
000161 TCCTTAGAAA AAAGTCATAT CGTTCTCTGG CTGCATCACC CAAATATATT TCTACTTCTT TCTAGGGACA GTGGCGTTTA 000240
000241 TCCCCTTGGC AGTGACATCC TTCAAACACT GCATGGCAAC CTGTGACCCC CTGTGCAGCA CCATCATTGC AAAAAGCAGG 000320
000321 GCCTGCCTCC TGCTGGCTCT GGGATGCTGG ATGGGAACCT TCCTGGCTGT GTTGCGCCTG ACTATTGTGG TGTCCAGGTT 000400
000401 GCCAGACTGT ACTGAAAAAA TTAGTCCCTT CTTCTGTGAC ATTGCCTCTT TACTGCAGGT GGCCTGTATT GATATTCATT 000480
000481 TCATTGAGAT GATAAGCTTC CTTTGATCAT CTCTTATGGT CCTGACCTCG CTGGTGCTTA ATGCCACATC CTACGCCTAC 000560
000561 ATCATTTCTC CCTCCTGTGC ATCCCCTCAG CCCAAGGATG TCAGGAGGCC TTTTCCACCT GTGCTTCACA CATCACCATC 000640
000641 ATCTTTATTG CCTGCCGAAA CTCCATCTCC ACGTGTGTGA GGCCTAACCC GAGGTATTAG
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Predicted Small Protein

Name NONHSAT024869_smProtein_272:505
Length 78
Molecular weight 8468.2407
Aromaticity 0.0779220779221
Instability index 68.0207792208
Isoelectric point 5.52569580078
Runs 6
Runs residual 0.0581592320723
Runs probability 0.0522875816994
Amino acid sequence MATCDPLCSTIIAKSRACLLLALGCWMGTFLAVLRLTIVVSRLPDCTEKISPFFCDIASL
LQVACIDIHFIEMISFL
Secondary structure LLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEELLLLLLLLLLLHHHHHHHHH
HHHHHHHHHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLHHHHH
HHHHHHHHHHHHHLLLL
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