Difference between revisions of "NONHSAT034251"
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==Annotated Information== | ==Annotated Information== | ||
| − | === | + | ===Name=== |
| − | + | Spinocerebellar ataxia 8 (SCA8) RNA | |
| + | |||
| + | KLHL1AS: kelch-like 1 (Drosophila) antisense | ||
| + | |||
| + | ATXN8OS: ataxin 8 opposite strand | ||
| + | |||
| + | ===Characteristics=== | ||
| + | ~1.5kb spliced transcript. Antisense to the KLHL1 gene (homolog of the Drosophila KELCH gene) in a bidirectional transcriptional orientation (overlapping in the first exon). | ||
===Function=== | ===Function=== | ||
| − | + | Ectopic expression in Drosophila induces late-onset, progressive neurodegeneration in the retina. | |
| + | |||
| + | Predicted gene product underpinning the triplet repeat expansion-induced neurodegenerative disease Spinocerebellar Ataxia 8. | ||
| − | + | Associates with the RNA binding protein staufen. | |
| − | |||
===Expression=== | ===Expression=== | ||
Please input expression information here. | Please input expression information here. | ||
| + | |||
| + | ===Conservation=== | ||
| + | KLHL1AS promoter is conserved between human and mouse. However, the mouse gene is not spliced. | ||
| + | |||
| + | ===Misc=== | ||
| + | Please input misc information here. | ||
| + | |||
| + | ===Transcriptomic Nomeclature=== | ||
| + | Please input transcriptomic nomeclature information here. | ||
| + | |||
| + | ===Regulation=== | ||
| + | Please input regulation information here. | ||
===Allelic Information and Variation=== | ===Allelic Information and Variation=== | ||
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}} | }} | ||
[[Category:Intergenic]] | [[Category:Intergenic]] | ||
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Revision as of 07:00, 10 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Name
Spinocerebellar ataxia 8 (SCA8) RNA
KLHL1AS: kelch-like 1 (Drosophila) antisense
ATXN8OS: ataxin 8 opposite strand
Characteristics
~1.5kb spliced transcript. Antisense to the KLHL1 gene (homolog of the Drosophila KELCH gene) in a bidirectional transcriptional orientation (overlapping in the first exon).
Function
Ectopic expression in Drosophila induces late-onset, progressive neurodegeneration in the retina.
Predicted gene product underpinning the triplet repeat expansion-induced neurodegenerative disease Spinocerebellar Ataxia 8.
Associates with the RNA binding protein staufen.
Expression
Please input expression information here.
Conservation
KLHL1AS promoter is conserved between human and mouse. However, the mouse gene is not spliced.
Misc
Please input misc information here.
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Regulation
Please input regulation information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT034251 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1472 nt |
| Genomic location |
chr13+:70681345..70713885 |
| Exon number |
5 |
| Exons |
70681345..70681873,70689273..70689430,70703916..70704016,70704810..70704980,70713373..70713885 |
| Genome context |
|
| Sequence |
000001 ATCCTTCACC TGTTGCCTGG CTAGAGTTGT CTGGCTCCAC TTTGAGCTCT TGCAGAACCA GCCCTTTTTC GTGTGGTCCA 000080
000081 GGAAAGTCCA TGCCTGGCAC CACCTCCTCC TCTAGTGACT CCACGTAGAA GAGAGTCCTG GCTGGCTGCT GAGTGCCCTG 000160 000161 CCCAGGAGCC CCTTGCTGCA GCCTCGTGGC AACTGGAAGC AGGGTGCCAT TCAGCGGATT GAAGGAAGAG GAGGAAGAGG 000240 000241 ACGGGGAGGA CGATGAAGAG GAAGAGGAGG AAGGCTTCTT CCAGAAAGTG CTCACACCGC TTCTCTCTTG GCTTTTGAGC 000320 000321 AGGCGACTCT GGCTGGGTCC CCAGTGCTCA AAGCTGCCAC TGCCGTCCTG TTGCAGGCAG CCTCCCCCCG CCGGGCCGCC 000400 000401 GGTGGAAGGA GACGGGTGGC TGAAGAGTTT CCAGCGGAGT CGCAGAATGT GCTTCACATC GAAGTCTTTT CGCCCAGAGC 000480 000481 CTGACATGCT TTACGCACAG AAGGCAAAAG GCTGGCAGCT CACGCAGGAT TCTGGAGGCT GGGAAGTTCA AGACCAATGC 000560 000561 ACGAGAATTT GGTCTAAAGA GAATCTTCTT GCTCTGAACA CACATAGTAG AAGGCAGAAG GGCAAGAGAG AGAACAAAGT 000640 000641 CTGTGTCTCC ACATGGCAGA AGAGCAGAGG AGACAGAACC TACTCCTCTA TGGCAACCAC CCCATCAATG ACAAAAATCC 000720 000721 TAGAAGGATG TATGTATAGG AAGTTGAAGT GTTGAGAAGA GAATGGCTCA GAGTCAAGCG GGAACAAGAT TCAAACTTCA 000800 000801 GAGAGAGAGG GAAGAAAAAC ATTTAAATAT ATCTGGCATA ATCCAAGACT ATTTACGACA AGTGTTCTGT GTTTCTAATA 000880 000881 ATAAAACAGA CTTCACCTCG GAGTACCTGC AGAACTGGGA CCCCAATGAC CAGGGAGAAT GAAGAACAAC TTGTTGAAGA 000960 000961 TTGCCTTTTC TGACTCCCAG CTTCCACGGA GAGATTAACT CTGTTGGCTG AAGCCCTATT CCCAATTCCT TGGCTAGACC 001040 001041 CTGGGTCCTT CATGTTAGAA AACCTGGCTT TACTACTACT ACTACTACTA CTACTACTAC TACTGCTGCT GCTGCTGCTG 001120 001121 CTGCTGCTGC TGCTGCTGCT GCTGCTGCAT TTTTTAAAAA TATATTATCT TATTTTACTA TTTGATGTTA TAATTGTTAT 001200 001201 ATATTTTTCC ACACTTCCTC ATACTGCTTA TCTCTTACTT AAGAATTTAT GAATAAAGAA TTGATTTTTC AATACATCCT 001280 001281 TCCAAAAATT ATCTGATGTT GAGTTAGTTG CTCTCTCTTG TGCATTCTCA GTCCTCACAA GCCTTTCTCA AACACAATGT 001360 001361 TTATCAAAGA AAATTGTAGC AACCAATATA CTTAGTGGAA TTTCTCACAG AGTTTGAGTG TAGGAAACAG TATTCACTGT 001440 001441 ATATTAGTCA TTTTGCTCCC AATAGAAGGT GC |
