NONHSAT036318
Revision as of 16:58, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT036318 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2263 nt |
Genomic location |
chr14-:34454359..34483402 |
Exon number |
6 |
Exons |
34454359..34454718,34456218..34456368,34457930..34458489,34464196..34464454,34465729..34466275,34483016..34483402 |
Genome context |
|
Sequence |
000001 ATTTGCCTAT TTTTGCTCTT ACCTAATTTT TAGGAGGAAT GATAGACAAA CATTAAGCAT TGGTTTCTCT CTAGATCCCG 000080
000081 TCAGTTTCCT CAAACACAGT AGTCTCCTCT GTTAGACCCT GGTGTGCTGC TGGGAATTAC TGGGACTCAC TGGCCAGCTG 000160 000161 CTGTCTCTTC TCTGCGGACC TCTTTGCTTT TAGGGAGCAG GAAACTAATT CCTCTAAGTG TTATACACTT GGAGACCCTT 000240 000241 TAGCATGAAC AACGGTGAAG AAACAGAAGC TCTCGTTGCT TTCCTGCATC AGACAAAAGG CTGTGGCCAC TTAAATACCA 000320 000321 CATTTTTACT TCCTTTTTAG TTCAGTTGAG GGAGCAGGTG AACCCTGCAG CAAGATAAAG CTGACCTTTC CAGAAATTAT 000400 000401 GGAGTGGAGC ACAAATATAA TCATGTCCTT GCCTAGCACG TAGCTATCTC TCAACCTTCC TTTAATTGGG GCTTCTTTAT 000480 000481 CCAACAATCT TAACACTCCA TGAAAGAGTC TCTGAATAGC CATATATCAA AGCTTATAAT TTTGCATATA GAATTGTATA 000560 000561 TAGAAAAGTA CCTAGCACAA AAGTTTTAAA CTCTTATTTT ACACAACTTG CTTATTAGGC TCTATGTCCA AGGCAAATCA 000640 000641 GAAGTAGAAT TAAAGAGGAG TGGTAAGAAA GGCAGGCTTG CTGAGCCTGG ATGGCATATG AGTGTGAGTG GGTGTGTGAT 000720 000721 TGAGTGTGTG TGTGTGTGAG AGAGTGTGTG TGTGGGTGAG TGCGTATGCG ACTGTGTGTG TGTATGCGAG TGTGTGTGTA 000800 000801 TGCGAGTGTG TGTGAGTGTG TGAGTGTGTG TGTGTGAGTG TGTATGCGTG TGTGTGTCTG TGAGCGCTCA TGCGTGCACA 000880 000881 TCTTCAGTCA TGTGCCCACT CCTGTACCAA ACATTTATGG TCCTATGTGG GAGATAGCCT GCCTCTGGGG AAAGAAGCCA 000960 000961 AGTCTTTCTT CATAGTCATT ATGCTCTATG CATGTGACTC TGCCATTCCT ATGACTACTA CTGAGCCAGG GGGTCTGTGC 001040 001041 CTGGGCCAAA GGGCAGCCAT GTCCATGAGA AAGGCCCATG CAGAGGCTCT ACAAGAGACT GCCCAATAGC AGGGCACCAT 001120 001121 ATTAGATGGT ATCAAATGGA TCCAGTTTCC TCCTCTCTCT CAGTGAGAAT AAATGTGAGA TACACAGAGC AGTTATCATG 001200 001201 GCACTATTAA CTCCCATCAA GCTTGGTCCT GGCTTCAGAA ACCTCAACAC AGTGCTTTGG GTGGCTACTA CCTGAAAATG 001280 001281 CAACTTATTT GCAACCTCTG ATCTAGAAGG AATATAAACT CAGAAAAAGA TAGTCTAGAA GTACACACTC ATCCTCAGAG 001360 001361 TTTGTCAATA TCTGCCACAA CTAGAGAAAA TAACCCATGA GATATTTGGT TCATTGACAC TACTAATGGT TTCAGTCTTG 001440 001441 AGACACTTAT CAAGATATTA AAGTTAAAGG GACCAAAGTC ATCTTGTTCT ATGCCCTCAT TTTATAGATC AGGAAACTGC 001520 001521 ATCAGACTTA TGTACATTAT CAAAGCTTAG AACGTAGGCT TCCTGGTCTT CCTGCTCCGA TGTTCGTCCA TGCTGACCCT 001600 001601 CTTCTGCTCT ACTTATCATA TGCTAGGCTC AACGAATCTT TATCATCTTG ATTATATCAT CTGTGTTCCT ACATATAGAC 001680 001681 GTATGGAGTA CTGTATGAAA TGTTACTACA TGAAAATGAT TCACTAGTAA ACTAGGACCT TTATCAATAT GTAGATAAAT 001760 001761 GGTACGAGGC TGATATGGGA GCATCCATCA CTGACTACCA GGTTGCTACT CCCAGCTCCT GTCTTCACAT CTGCATACCA 001840 001841 ACCAGTAAGA AGAGGAGAAG GAGCAAGGAG AGCACATAAC TTTCCTTTTA AGGACACAAC TAGGCAAGAT GCCATGTTGT 001920 001921 GAGCTGCTCT GTGGAGGGGG ACCTGTGGCG AGGAACTGAG GGCAGCCAGC AGGCAACAGC CAGCTGCCAT GTTGTGAGTA 002000 002001 GCCCTATGGA GGGGCCCACA TGGCAAGGAA CTGACATCTT TGGTCAACAG TCAGTGAGGA CTTAAGGCTG CCAATAGCCA 002080 002081 CATGAGGGAG CTTGGAAGCA GATCTTCCCC CAGTGGAGCC TTGAGATGAC TGCAGTCTGG CTGACACCTT GATTGTTGCC 002160 002161 TTCTGGGAGA CCTTGAGGTG GGGGACCCAG CTAAGCTGCC CAGCTTCCTG ACCGGCAGAA ACTGGGAGAC AATAAATGTT 002240 002241 GGTGTTTTAA GCCACTACAT TTT |
Predicted Small Protein
Name | NONHSAT036318_smProtein_869:1108 |
Length | 80 |
Molecular weight | 8598.9371 |
Aromaticity | 0.0632911392405 |
Instability index | 64.2126582278 |
Isoelectric point | 7.72332763672 |
Runs | 9 |
Runs residual | 0.0263568579851 |
Runs probability | 0.0403148246286 |
Amino acid sequence | MRAHLQSCAHSCTKHLWSYVGDSLPLGKEAKSFFIVIMLYACDSAIPMTTTEPGGLCLGQ RAAMSMRKAHAEALQETAQ |
Secondary structure | LHHHHHHHHHHHHHHHHHHHLLLLLLLHHHHHEEEEEEHHHLLLLLLLLLLLLLLLLHHH HHHHHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |