NONHSAT040785

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT040785

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3940 nt

Genomic location

chr15+:23097010..23105332

Exon number

7

Exons

23097010..23097093,23098399..23098527,23099642..23099692,23099781..23100063,23101318..23101377,23101707..23101847,23102141..23105332

Genome context

Sequence
000001 ATGTGGCCCC AACCCCACCT CCCTCCCCAC CCCATGATGT CAGAAAAAAC CTGACACAGA AAATTGGCTG GGGCCAAGAG 000080
000081 AAAGTTCACA GACTATCGTC AGTGGAACAT TGCTGGTGTT GGTACCGGAG CAACCGACAC CAAAAAGAAG AAAATAAATC 000160
000161 ATGGCACTAA CCCTGAGACA ACCACTTCGG GGGGCTGCCA CTCGCCTGAG GATGAAAAGA AGGCAAGCCA CCAACATCAG 000240
000241 CAAGCCCTAA GGAGGCAGCT AGAGGCCCAG GATCATACCA TACGAATCCT TATGTGTCAG AAAACTGAAC TGGAGACAGC 000320
000321 GCTCCATGAC AGCCAGGATG CTGCCAGGAA ATTTGAAGGT GGGAATCTGG GCACCCCGTC ACCCTTCAAC CTGGCACTTT 000400
000401 CACAGGCCTT TGGGCTGCAG CTCAACCTCT CTCATTCCAG AAGATTCCAA GGATCTGGCA GGCTGCCTGC ATCATTCCTG 000480
000481 GCACTTTGCA GGAGAGTTAC AGCGGGCTCT CTCTGCTATG TCCGCAGAGC ACAAGAGGGC GGACAGGTAC ATCGAGGAGT 000560
000561 TAACAAAGGA GAGGGAAGCC ATGAGTCTGG AACTGTACAG GAACACGATA ACCAATGAGG AGCTGAAGGA GAAAAATGCC 000640
000641 GAACTACAAG AAGAACTTCA ACTGGTAGAA ACTGAAAAGT CTGAGATCCA GCTCCACATC AAGGAGCTAA AAAGGAAACT 000720
000721 GGAGACGGAC AAAATCCCGC TGCCACAGGT TCAAACCAAC ACTTTGCAGG AGAAGATGTG GAGgcagaag gaggagctac 000800
000801 aggatcagga gaagctacgg aagcacaagg agaagatgtg gtgacaggag cagaggctgc gggaccagga gaaggagctg 000880
000881 tgggagcagg agcagcaaat gcaggagcag gagcagcagA TGCGggagca ggaggagcag atgcgggagc aggaggggca 000960
000961 ggtgcgggag caggaggggc aggtgcggga gcaggagggg caggtgcggg agcaggaggg gcaggtgcgg gagcaggagg 001040
001041 ggcaggtgcg ggagcaggag gggcaggtgc gggagcagga ggggcaggtg cgggagcagg aggggcaggt gcgggagcag 001120
001121 gaggggcagg tgcgggagca ggaggggcag gtgcgggagc aggaggggca ggtgcgggag caggaggggc aggtgcggga 001200
001201 gcaggagggg caggtgcggg agcaggaggg gcaggtgcgg gagcaggagg ggcaggtgcg ggagcaggag gggcaggtgc 001280
001281 gggagcagga ggggcaggtg cgggagcagg aggggcaggt gcgggagcag gaggggcagg tgcgggagca ggaggggcag 001360
001361 gtgcgggagc aggaggggca ggtgcgggag caggaggggc aggtgcggga gcaggagggg caggtgcggg agcaggaggg 001440
001441 gcaggtgcgg gagcaggagg ggcaggtgcg ggagcaggag gggcaggtgc gggagcagga ggggcaggtg cgggagcagg 001520
001521 aggggcaggt gcgggagcag gaggggcagg tgcgggagca ggaggggcag gtgcgggagc aggaggggca ggtgcgggag 001600
001601 caggaggggc aggtgcggga gcaggagggg caggtgcggg agcaggaggg gcagatgggg gagcaggagg ggcagatggg 001680
001681 ggagcaggag gagcagatgg gggagcagga ggagcagatg cagaagcagg aggagcagat gggggagcag gaggagcaga 001760
001761 tgcggaagca ggaggagcag atgggggagc aggaggagca ggtgcagaag caggaggagc aggtgcaaaa gcaggaggag 001840
001841 cagatgcgga agcaggagga gcagatgcgg gagcaggagg agcagatgcg ggagcaggag gagcagatgc tgaagcagaa 001920
001921 ggagcagacg gagcaggagg agcagacggg ggagcaggag gagcagatgc gggagcagga ggagcagatg cgggagcagg 002000
002001 aggagcagat gcgggagcag gaggagcaga tgcgggagca ggaggagcag atggggaagc aggaggaaca gatgtgggag 002080
002081 cagaaggagc aaatgtggga gcagaaggag cagatgtgga agcaggagga gcaaatgggg gagcaggagg agcagatgca 002160
002161 gaagcaggag gagcaggtgc gaaagcagga ggagcagatg cggaagcagg aggagcagat gcggaagcag gaggagcaga 002240
002241 tgcggaagca ggaggagcaa atgggggagc agaaggagca aatgggggag caggaggagc agatgcggga gcaggaggag 002320
002321 caaatggggg agcagaagga gcagatgcgg aagcaggagg agcacatggg ggagcagaag gagcagatgc ggaagcagga 002400
002401 ggagcagatg cggaagcagg aggagcagat gcggaagcag gaggagcaga tgggggagca ggaggagcag gtgcgggagc 002480
002481 aggaggagca gatgggggag caggaggagc agatgcggaa gcaggagaag cagatgctga agcagaagga gcagatgggg 002560
002561 gagcaggagg agcagatggg ggagcaggag gagcagatgc ggaagcagga ggagcagatg cagaagcagg aggagcaaat 002640
002641 gggggagcag aaggagcaga tgcggaagca ggaggagcaa atgggggagc aggaggagca aatgggggag caggaggagc 002720
002721 agatgcggaa gcaggagcag caggtgcaaa agcaggagga gcagatgcgg aagcaggagg agcagatgga gcaggaggag 002800
002801 caggtgcggg agcaagagga gcaggtgggg gagcaggagg agcagatgag ggagcaggag gagaagatgg gggagcagga 002880
002881 ggagcagatg cagaagcagg aggagcagat gggggagaag gaggagcaga tgggggagca ggaggagcag atgcggaagc 002960
002961 aggaggagca gatgcggaag caggaggagc agatggggga gcaggaggag cagatggggg agcaggagga gcagatgcgg 003040
003041 aagcaggagg agcaggtggg ggagcaggag gagcagatgc tgaagcagga ggagcagatg cggaagcagg aggagcagat 003120
003121 gcggaagcag gaggagcagg tgggggagca ggaggagcag atgcgggagc aggaggagca gatgtggaag caggaggagc 003200
003201 agatggggga gcaggaggag cagatgagga agcaggagga gcagatgggg gagcaggagg agcagatggg gaagcaggag 003280
003281 gagcagatgg gggagcagga ggagcagatg ggggagcagg aggagcagat gggggagcag gaggagcaga tgtgggagca 003360
003361 ggaggagcag atgcggaagc aggaggagca gatgggggag caggaggagc agatgaggaa tcaggaggag cagatggggg 003440
003441 agcaggagga gcagatgcgg aagcaggagg agcagatggg ggagcaggag gagcagatga ggaagcagga ggagcagatg 003520
003521 ggggagcagg aggagcagat gcggaagcag GTCGAGAGGC TGCGATTCAa ggaggagagg ctgtgggatg agtatgagaa 003600
003601 gatgcaggag gaggaggaga agatccgggg gcaggtggag aagatggggg agaagaagga gaggatggga gagcaggagg 003680
003681 agaagatgca ggaggagCGG TGCTCAGAGC CCTGCCTCCC TCCCTCCAAA TATCCTTGTG ATATGAGCCA CCCTGGCAGC 003760
003761 CTGGAGCCTG CACGAGAAGC CGGGAAGGGT TATTCCCATG ACCACCACAC TGCACAGCAG ATCATGCAGC TGCCCCCTGG 003840
003841 AATGAAGAAC GCCCAGGAGC GCCCAGGCTT AGGCAGCACC TCCTGCATCC CATTCTTCTA CCGAGGAGAC AAGAAAAAGA 003920
003921 TCAAGATCAT CAATATCTAA
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Predicted Small Protein

Name NONHSAT040785_smProtein_3587:3745
Length 53
Molecular weight 6489.5514
Aromaticity 0.0576923076923
Instability index 257.013461538
Isoelectric point 12.6284790039
Runs 7
Runs residual 0.0157540199913
Runs probability 0.0199232846292
Amino acid sequence MSMRRCRRRRRRSGGRWRRWGRRRRGWESRRRRCRRSGAQSPASLPPNILVI
Secondary structure LLLHHHLLLLLLLLLLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLEEEL
PRMN -
PiMo -