NONHSAT040785
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT040785 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3940 nt |
Genomic location |
chr15+:23097010..23105332 |
Exon number |
7 |
Exons |
23097010..23097093,23098399..23098527,23099642..23099692,23099781..23100063,23101318..23101377,23101707..23101847,23102141..23105332 |
Genome context |
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Sequence |
000001 ATGTGGCCCC AACCCCACCT CCCTCCCCAC CCCATGATGT CAGAAAAAAC CTGACACAGA AAATTGGCTG GGGCCAAGAG 000080
000081 AAAGTTCACA GACTATCGTC AGTGGAACAT TGCTGGTGTT GGTACCGGAG CAACCGACAC CAAAAAGAAG AAAATAAATC 000160 000161 ATGGCACTAA CCCTGAGACA ACCACTTCGG GGGGCTGCCA CTCGCCTGAG GATGAAAAGA AGGCAAGCCA CCAACATCAG 000240 000241 CAAGCCCTAA GGAGGCAGCT AGAGGCCCAG GATCATACCA TACGAATCCT TATGTGTCAG AAAACTGAAC TGGAGACAGC 000320 000321 GCTCCATGAC AGCCAGGATG CTGCCAGGAA ATTTGAAGGT GGGAATCTGG GCACCCCGTC ACCCTTCAAC CTGGCACTTT 000400 000401 CACAGGCCTT TGGGCTGCAG CTCAACCTCT CTCATTCCAG AAGATTCCAA GGATCTGGCA GGCTGCCTGC ATCATTCCTG 000480 000481 GCACTTTGCA GGAGAGTTAC AGCGGGCTCT CTCTGCTATG TCCGCAGAGC ACAAGAGGGC GGACAGGTAC ATCGAGGAGT 000560 000561 TAACAAAGGA GAGGGAAGCC ATGAGTCTGG AACTGTACAG GAACACGATA ACCAATGAGG AGCTGAAGGA GAAAAATGCC 000640 000641 GAACTACAAG AAGAACTTCA ACTGGTAGAA ACTGAAAAGT CTGAGATCCA GCTCCACATC AAGGAGCTAA AAAGGAAACT 000720 000721 GGAGACGGAC AAAATCCCGC TGCCACAGGT TCAAACCAAC ACTTTGCAGG AGAAGATGTG GAGgcagaag gaggagctac 000800 000801 aggatcagga gaagctacgg aagcacaagg agaagatgtg gtgacaggag cagaggctgc gggaccagga gaaggagctg 000880 000881 tgggagcagg agcagcaaat gcaggagcag gagcagcagA TGCGggagca ggaggagcag atgcgggagc aggaggggca 000960 000961 ggtgcgggag caggaggggc aggtgcggga gcaggagggg caggtgcggg agcaggaggg gcaggtgcgg gagcaggagg 001040 001041 ggcaggtgcg ggagcaggag gggcaggtgc gggagcagga ggggcaggtg cgggagcagg aggggcaggt gcgggagcag 001120 001121 gaggggcagg tgcgggagca ggaggggcag gtgcgggagc aggaggggca ggtgcgggag caggaggggc aggtgcggga 001200 001201 gcaggagggg caggtgcggg agcaggaggg gcaggtgcgg gagcaggagg ggcaggtgcg ggagcaggag gggcaggtgc 001280 001281 gggagcagga ggggcaggtg cgggagcagg aggggcaggt gcgggagcag gaggggcagg tgcgggagca ggaggggcag 001360 001361 gtgcgggagc aggaggggca ggtgcgggag caggaggggc aggtgcggga gcaggagggg caggtgcggg agcaggaggg 001440 001441 gcaggtgcgg gagcaggagg ggcaggtgcg ggagcaggag gggcaggtgc gggagcagga ggggcaggtg cgggagcagg 001520 001521 aggggcaggt gcgggagcag gaggggcagg tgcgggagca ggaggggcag gtgcgggagc aggaggggca ggtgcgggag 001600 001601 caggaggggc aggtgcggga gcaggagggg caggtgcggg agcaggaggg gcagatgggg gagcaggagg ggcagatggg 001680 001681 ggagcaggag gagcagatgg gggagcagga ggagcagatg cagaagcagg aggagcagat gggggagcag gaggagcaga 001760 001761 tgcggaagca ggaggagcag atgggggagc aggaggagca ggtgcagaag caggaggagc aggtgcaaaa gcaggaggag 001840 001841 cagatgcgga agcaggagga gcagatgcgg gagcaggagg agcagatgcg ggagcaggag gagcagatgc tgaagcagaa 001920 001921 ggagcagacg gagcaggagg agcagacggg ggagcaggag gagcagatgc gggagcagga ggagcagatg cgggagcagg 002000 002001 aggagcagat gcgggagcag gaggagcaga tgcgggagca ggaggagcag atggggaagc aggaggaaca gatgtgggag 002080 002081 cagaaggagc aaatgtggga gcagaaggag cagatgtgga agcaggagga gcaaatgggg gagcaggagg agcagatgca 002160 002161 gaagcaggag gagcaggtgc gaaagcagga ggagcagatg cggaagcagg aggagcagat gcggaagcag gaggagcaga 002240 002241 tgcggaagca ggaggagcaa atgggggagc agaaggagca aatgggggag caggaggagc agatgcggga gcaggaggag 002320 002321 caaatggggg agcagaagga gcagatgcgg aagcaggagg agcacatggg ggagcagaag gagcagatgc ggaagcagga 002400 002401 ggagcagatg cggaagcagg aggagcagat gcggaagcag gaggagcaga tgggggagca ggaggagcag gtgcgggagc 002480 002481 aggaggagca gatgggggag caggaggagc agatgcggaa gcaggagaag cagatgctga agcagaagga gcagatgggg 002560 002561 gagcaggagg agcagatggg ggagcaggag gagcagatgc ggaagcagga ggagcagatg cagaagcagg aggagcaaat 002640 002641 gggggagcag aaggagcaga tgcggaagca ggaggagcaa atgggggagc aggaggagca aatgggggag caggaggagc 002720 002721 agatgcggaa gcaggagcag caggtgcaaa agcaggagga gcagatgcgg aagcaggagg agcagatgga gcaggaggag 002800 002801 caggtgcggg agcaagagga gcaggtgggg gagcaggagg agcagatgag ggagcaggag gagaagatgg gggagcagga 002880 002881 ggagcagatg cagaagcagg aggagcagat gggggagaag gaggagcaga tgggggagca ggaggagcag atgcggaagc 002960 002961 aggaggagca gatgcggaag caggaggagc agatggggga gcaggaggag cagatggggg agcaggagga gcagatgcgg 003040 003041 aagcaggagg agcaggtggg ggagcaggag gagcagatgc tgaagcagga ggagcagatg cggaagcagg aggagcagat 003120 003121 gcggaagcag gaggagcagg tgggggagca ggaggagcag atgcgggagc aggaggagca gatgtggaag caggaggagc 003200 003201 agatggggga gcaggaggag cagatgagga agcaggagga gcagatgggg gagcaggagg agcagatggg gaagcaggag 003280 003281 gagcagatgg gggagcagga ggagcagatg ggggagcagg aggagcagat gggggagcag gaggagcaga tgtgggagca 003360 003361 ggaggagcag atgcggaagc aggaggagca gatgggggag caggaggagc agatgaggaa tcaggaggag cagatggggg 003440 003441 agcaggagga gcagatgcgg aagcaggagg agcagatggg ggagcaggag gagcagatga ggaagcagga ggagcagatg 003520 003521 ggggagcagg aggagcagat gcggaagcag GTCGAGAGGC TGCGATTCAa ggaggagagg ctgtgggatg agtatgagaa 003600 003601 gatgcaggag gaggaggaga agatccgggg gcaggtggag aagatggggg agaagaagga gaggatggga gagcaggagg 003680 003681 agaagatgca ggaggagCGG TGCTCAGAGC CCTGCCTCCC TCCCTCCAAA TATCCTTGTG ATATGAGCCA CCCTGGCAGC 003760 003761 CTGGAGCCTG CACGAGAAGC CGGGAAGGGT TATTCCCATG ACCACCACAC TGCACAGCAG ATCATGCAGC TGCCCCCTGG 003840 003841 AATGAAGAAC GCCCAGGAGC GCCCAGGCTT AGGCAGCACC TCCTGCATCC CATTCTTCTA CCGAGGAGAC AAGAAAAAGA 003920 003921 TCAAGATCAT CAATATCTAA |
Predicted Small Protein
Name | NONHSAT040785_smProtein_3587:3745 |
Length | 53 |
Molecular weight | 6489.5514 |
Aromaticity | 0.0576923076923 |
Instability index | 257.013461538 |
Isoelectric point | 12.6284790039 |
Runs | 7 |
Runs residual | 0.0157540199913 |
Runs probability | 0.0199232846292 |
Amino acid sequence | MSMRRCRRRRRRSGGRWRRWGRRRRGWESRRRRCRRSGAQSPASLPPNILVI |
Secondary structure | LLLHHHLLLLLLLLLLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLEEEL |
PRMN | - |
PiMo | - |