Difference between revisions of "NONHSAT041886"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>aaatgtacagtactcaattattagttatatttgccatgtacaatagatctcaaacaaaaatatcaaacttcctcctgaggtattgtatcctttcattatcacctccctgtaccctccaccctcATGTGAGCATTTCTGACATTAGAATAATTCCTCAAAAATAACCCTTTAggacacagggaggggaacaacacacactggggcctgtggggtaggttggagggagggagagcatcaggataaatagttaatgcatgcagggcttaatacctaggtgatgggctgataggtgcagcaaaccaccatggcacatgtttacctatgcaacaaacctgcacatcctgcacatgtaccccagaacttaataaaataaaataaaataaaataaaaACAGGATgggtgcagtgactcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggttgggagttcgagactagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagccgggcatggtggcgcatgcctgtaatcccagctactcaggaggctgagggagaattacttgaagctgggaggcggaggttgcagtgagctgagatcgagccattgcattccagcctgggcaacaagagcaaaactctatctcaaaaaaaaaaaaacaacaacaaaaaacaaCCCTTTAAGAGCtgttaaaagaaaatccatagccaaattaggccaggcgcaatggctcacgcctgtaatcccagcactttgggagttgtggtgagctgagattgcaccattgcactccagcctgggcgacaagagcaaatttctgtctcaaaaaaaaaaatccatagtcaaattaaatttaagagttcaatttagcaaagtacgattggtaaattgggcagcattctgagccagagtaggctcagagatttatgggcagcataaggaaagtgatgtacagaaaatggaaatgagggacagaaacagccagattggttacagctcagtgtttgccttatttgaagagggtttgaacagttggccccttttgattggccaaaacttggtgtttggcacaagggtagattacaggctgtttacacctccatttaggtgacagttcactatgtacagagaaacctttacgtcaaactcaaaatatgtaaggaggctaaatttgatttaacaGAGCTGTAGCAGTATCTGTGAGGGGCTGTCTTTTTAAAATAGAAGTTAAATTggctgggcacagtggctcacacctgtaa</dnaseq>| | sequence = <dnaseq>aaatgtacagtactcaattattagttatatttgccatgtacaatagatctcaaacaaaaatatcaaacttcctcctgaggtattgtatcctttcattatcacctccctgtaccctccaccctcATGTGAGCATTTCTGACATTAGAATAATTCCTCAAAAATAACCCTTTAggacacagggaggggaacaacacacactggggcctgtggggtaggttggagggagggagagcatcaggataaatagttaatgcatgcagggcttaatacctaggtgatgggctgataggtgcagcaaaccaccatggcacatgtttacctatgcaacaaacctgcacatcctgcacatgtaccccagaacttaataaaataaaataaaataaaataaaaACAGGATgggtgcagtgactcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggttgggagttcgagactagcctgaccaacatggagaaaccccatctctactaaaaatacaaaattagccgggcatggtggcgcatgcctgtaatcccagctactcaggaggctgagggagaattacttgaagctgggaggcggaggttgcagtgagctgagatcgagccattgcattccagcctgggcaacaagagcaaaactctatctcaaaaaaaaaaaaacaacaacaaaaaacaaCCCTTTAAGAGCtgttaaaagaaaatccatagccaaattaggccaggcgcaatggctcacgcctgtaatcccagcactttgggagttgtggtgagctgagattgcaccattgcactccagcctgggcgacaagagcaaatttctgtctcaaaaaaaaaaatccatagtcaaattaaatttaagagttcaatttagcaaagtacgattggtaaattgggcagcattctgagccagagtaggctcagagatttatgggcagcataaggaaagtgatgtacagaaaatggaaatgagggacagaaacagccagattggttacagctcagtgtttgccttatttgaagagggtttgaacagttggccccttttgattggccaaaacttggtgtttggcacaagggtagattacaggctgtttacacctccatttaggtgacagttcactatgtacagagaaacctttacgtcaaactcaaaatatgtaaggaggctaaatttgatttaacaGAGCTGTAGCAGTATCTGTGAGGGGCTGTCTTTTTAAAATAGAAGTTAAATTggctgggcacagtggctcacacctgtaa</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG016619]][[Category:Transcripts]] |
Latest revision as of 21:54, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT041886 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1288 nt |
Genomic location |
chr15+:41128776..41130236 |
Exon number |
2 |
Exons |
41128776..41129560,41129734..41130236 |
Genome context |
|
Sequence |
000001 aaatgtacag tactcaatta ttagttatat ttgccatgta caatagatct caaacaaaaa tatcaaactt cctcctgagg 000080
000081 tattgtatcc tttcattatc acctccctgt accctccacc ctcATGTGAG CATTTCTGAC ATTAGAATAA TTCCTCAAAA 000160 000161 ATAACCCTTT Aggacacagg gaggggaaca acacacactg gggcctgtgg ggtaggttgg agggagggag agcatcagga 000240 000241 taaatagtta atgcatgcag ggcttaatac ctaggtgatg ggctgatagg tgcagcaaac caccatggca catgtttacc 000320 000321 tatgcaacaa acctgcacat cctgcacatg taccccagaa cttaataaaa taaaataaaa taaaataaaa ACAGGATggg 000400 000401 tgcagtgact catgcctgta atcccagcac tttgggaggc cgaggtgggt ggatcacctg aggttgggag ttcgagacta 000480 000481 gcctgaccaa catggagaaa ccccatctct actaaaaata caaaattagc cgggcatggt ggcgcatgcc tgtaatccca 000560 000561 gctactcagg aggctgaggg agaattactt gaagctggga ggcggaggtt gcagtgagct gagatcgagc cattgcattc 000640 000641 cagcctgggc aacaagagca aaactctatc tcaaaaaaaa aaaaacaaca acaaaaaaca aCCCTTTAAG AGCtgttaaa 000720 000721 agaaaatcca tagccaaatt aggccaggcg caatggctca cgcctgtaat cccagcactt tgggagttgt ggtgagctga 000800 000801 gattgcacca ttgcactcca gcctgggcga caagagcaaa tttctgtctc aaaaaaaaaa atccatagtc aaattaaatt 000880 000881 taagagttca atttagcaaa gtacgattgg taaattgggc agcattctga gccagagtag gctcagagat ttatgggcag 000960 000961 cataaggaaa gtgatgtaca gaaaatggaa atgagggaca gaaacagcca gattggttac agctcagtgt ttgccttatt 001040 001041 tgaagagggt ttgaacagtt ggcccctttt gattggccaa aacttggtgt ttggcacaag ggtagattac aggctgttta 001120 001121 cacctccatt taggtgacag ttcactatgt acagagaaac ctttacgtca aactcaaaat atgtaaggag gctaaatttg 001200 001201 atttaacaGA GCTGTAGCAG TATCTGTGAG GGGCTGTCTT TTTAAAATAG AAGTTAAATT ggctgggcac agtggctcac 001280 001281 acctgtaa |
Predicted Small Protein
Name | NONHSAT041886_smProtein_2:163 |
Length | 54 |
Molecular weight | 6152.2807 |
Aromaticity | 0.0943396226415 |
Instability index | 49.8566037736 |
Isoelectric point | 9.59002685547 |
Runs | 7 |
Runs residual | 0.0281868384722 |
Runs probability | 0.0309006485478 |
Amino acid sequence | MYSTQLLVIFAMYNRSQTKISNFLLRYCILSLSPPCTLHPHVSISDIRIIPQK |
Secondary structure | LLLHHHHHHHHHHLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLEEEEELL |
PRMN | - |
PiMo | - |