NONHSAT041886

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT041886

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1288 nt

Genomic location

chr15+:41128776..41130236

Exon number

2

Exons

41128776..41129560,41129734..41130236

Genome context

Sequence
000001 aaatgtacag tactcaatta ttagttatat ttgccatgta caatagatct caaacaaaaa tatcaaactt cctcctgagg 000080
000081 tattgtatcc tttcattatc acctccctgt accctccacc ctcATGTGAG CATTTCTGAC ATTAGAATAA TTCCTCAAAA 000160
000161 ATAACCCTTT Aggacacagg gaggggaaca acacacactg gggcctgtgg ggtaggttgg agggagggag agcatcagga 000240
000241 taaatagtta atgcatgcag ggcttaatac ctaggtgatg ggctgatagg tgcagcaaac caccatggca catgtttacc 000320
000321 tatgcaacaa acctgcacat cctgcacatg taccccagaa cttaataaaa taaaataaaa taaaataaaa ACAGGATggg 000400
000401 tgcagtgact catgcctgta atcccagcac tttgggaggc cgaggtgggt ggatcacctg aggttgggag ttcgagacta 000480
000481 gcctgaccaa catggagaaa ccccatctct actaaaaata caaaattagc cgggcatggt ggcgcatgcc tgtaatccca 000560
000561 gctactcagg aggctgaggg agaattactt gaagctggga ggcggaggtt gcagtgagct gagatcgagc cattgcattc 000640
000641 cagcctgggc aacaagagca aaactctatc tcaaaaaaaa aaaaacaaca acaaaaaaca aCCCTTTAAG AGCtgttaaa 000720
000721 agaaaatcca tagccaaatt aggccaggcg caatggctca cgcctgtaat cccagcactt tgggagttgt ggtgagctga 000800
000801 gattgcacca ttgcactcca gcctgggcga caagagcaaa tttctgtctc aaaaaaaaaa atccatagtc aaattaaatt 000880
000881 taagagttca atttagcaaa gtacgattgg taaattgggc agcattctga gccagagtag gctcagagat ttatgggcag 000960
000961 cataaggaaa gtgatgtaca gaaaatggaa atgagggaca gaaacagcca gattggttac agctcagtgt ttgccttatt 001040
001041 tgaagagggt ttgaacagtt ggcccctttt gattggccaa aacttggtgt ttggcacaag ggtagattac aggctgttta 001120
001121 cacctccatt taggtgacag ttcactatgt acagagaaac ctttacgtca aactcaaaat atgtaaggag gctaaatttg 001200
001201 atttaacaGA GCTGTAGCAG TATCTGTGAG GGGCTGTCTT TTTAAAATAG AAGTTAAATT ggctgggcac agtggctcac 001280
001281 acctgtaa
[back to top]

Predicted Small Protein

Name NONHSAT041886_smProtein_2:163
Length 54
Molecular weight 6152.2807
Aromaticity 0.0943396226415
Instability index 49.8566037736
Isoelectric point 9.59002685547
Runs 7
Runs residual 0.0281868384722
Runs probability 0.0309006485478
Amino acid sequence MYSTQLLVIFAMYNRSQTKISNFLLRYCILSLSPPCTLHPHVSISDIRIIPQK
Secondary structure LLLHHHHHHHHHHLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLEEEEELL
PRMN -
PiMo -