NONHSAT044069
Revision as of 21:57, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT044069 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
847 nt |
Genomic location |
chr15+:57611283..57617212 |
Exon number |
4 |
Exons |
57611283..57611654,57615103..57615325,57616044..57616130,57617048..57617212 |
Genome context |
|
Sequence |
000001 AGGAAATGTG CCGTGAATGG ATGGTGAACA GGAAGGGACA CTGAAGAAGG AGGCGGTACT GAGAGCAGCC ATCTTGGAGC 000080
000081 TTGGAAACGG AGACGCATGT GAAGCCGTTT GCACAGTATT TTTCCCTTAA AATATGGGTG GGGAACAAGG GGCTGTCATT 000160 000161 TGTCTTTTTC TTTGGGATGG TGAGCAGTGA GCAGGGCACG CCGCGAGGAG CAAACTGCAG CCCAAGCACA CGCGGTCAGC 000240 000241 ACGCGGAGCA CAGGTGGGGA GAAGCGGCTG ACGGTGGCGT GGCCCCGCGT ACCTGGGTGT GGACGCCCCG CCGCCCCGCA 000320 000321 GGGGAAAGCT CCTGGAGTCT GGGGTCTGCT GCCCCGAGCT CTGGGTGTCC AGgacaatca tgctggctgt tagtgaagaa 000400 000401 tggcctggag CACTGGGTCT CCGCCCCAGC TGCCTGGGAG AAACTGTGTT GAAGGAGCCA TACCCCCTGG CCTCCCCTCC 000480 000481 AGACTCCAGA CAACCCCAGT CAGCTGGCTG ggagggaggc agaagagaaa caggggtgca cctggggctc ctgcaggggt 000560 000561 ccagccagga gatgggggca acttggacag ggacgATCCT GGGAAGGGCA GGAGGAGGAG TGAGACCTGG CCTGCCCTCT 000640 000641 CCCTAGAGGC TCATCAGCTC CCTGGAGACA GACACGCCCT GGTTCCTTTC CCTATGCCTG GAGCCTGGGT ACCAGCTATT 000720 000721 GAAAACTGCT TTTCTCCTTG TTCATTCAAA CATATTCACA CATAAAGGTT GTCATTCCTT TTTGTCACTA TTTGACAAAA 000800 000801 ATTGGATCAT ACCGTATACA ATTCTCTGCT ATTTGTTTTG CTCACCT |
Predicted Small Protein
Name | NONHSAT044069_smProtein_176:451 |
Length | 92 |
Molecular weight | 9669.6221 |
Aromaticity | 0.0769230769231 |
Instability index | 52.4725274725 |
Isoelectric point | 7.72772216797 |
Runs | 11 |
Runs residual | 0.0125915750916 |
Runs probability | 0.0300220006102 |
Amino acid sequence | MVSSEQGTPRGANCSPSTRGQHAEHRWGEAADGGVAPRTWVWTPRRPAGESSWSLGSAAP SSGCPGQSCWLLVKNGLEHWVSAPAAWEKLC |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLEEELLLLLLLLLLLLLLLLLL LLLLLLLEEEEEELLLLEEEELLHHHHHHLL |
PRMN | - |
PiMo | - |