NONHSAT052821
Revision as of 22:14, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052821 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1248 nt |
Genomic location |
chr17+:29058652..29103431 |
Exon number |
9 |
Exons |
29058652..29059141,29061915..29061961,29062051..29062115,29070319..29070387,29086509..29086557,29093521..29093606,29095852..29096082,29096890..29096983,29103315..29103431 |
Genome context |
|
Sequence |
000001 GGGGGAAGTG GGCGGAGCGA GGCCTGGGTA GGGTGAGCGG CCTCCGAAGC GGAGCGGGGC TCTGAGGAGA CACTTTTTct 000080
000081 tcctccctcc ttccctcctc tcctcctgcc ttcccttccc ctttcctccc ctctctccTC CTTCTCCCCT CGGTCAGCCG 000160 000161 GAGCCTGCTG GGGCGAGCGG TTGGTATTGC AGGCGCTTAC TCTCCGGGGC CGCCCGGCGA GTAGCTGGCC GGGGAAGGAG 000240 000241 GCAGGAACCG CGATGGCGCC TCAGAAGCAC GGCGGTGGGG GAGGGGGCGG CTCGGGGCCC AGCGCGGGGT Ccgggggagg 000320 000321 cggcttcggg ggttcggcgg cgacggcttc gagcggcaaa tccggcggcg ggggctgtgg aggcggtggc agTTACTCGG 000400 000401 CCTCCTCCTC CTCCGCGGCG TTACCGGTGA AGAAGTCGAA AATGGAGCAC GTCCAGGCTG ACCACGAGCT TTTCCTCCAG 000480 000481 GCCTTTGAGA AGCCAACACA GATCTATAGA TTTCTTTGAA CTCGGAATCT CATAGCACCA ATATTTTTGC ACAGAACTCT 000560 000561 TACTTACATG TCTCATCGAA ACTCCAGAAC AAACATCAAA AGGAAAACAT TTAAAGTTGA TGATATGTTA TCAAAAGTAG 000640 000641 AGAAAATGAA AGGAGAGCAA GAATCTCATA GCTTGTCAGC TCATTTGCAG CTTACATTTT TGGTTTCTTC CACAAAAATG 000720 000721 ATAAGCCATC ACCAAACTCA GAAAATGAAC AAAATTCTGT TACCCTGGAA GTCCTGCTTG TGAAAGTTTG CCACAAAAAA 000800 000801 AGAAAGGATG TATGTTGTCC AATAAGGCAA GTTCCCACAG GTAAAAAGCA GGTGCCTTTG AATCCTGACC TCAATCAAAC 000880 000881 AAAACCTGGA AATTTCCCGT CCCTTGCAGT TTCCAGTAAT GAATTTGAAC CTAGTAACAG CCACATGGTG AAGTCTTACT 000960 000961 CGTTGCTATT TAGAGTGACT CGTCCAAGAA GAAGAGAGTT TAATGGAATG ATTAATGGAG AAACCATGAA AATATTGATG 001040 001041 TCAGTGAAGA GCTTCCAGCC AGAAGAAAAT GAAATCGTGA GGATGGGGAA AAGACATTTG TTGCACAAAT GACAGTATTT 001120 001121 GATAAAAACA GGCGCTTACA GCTTTTAGAT GGGGAATATG AAGTAGCCAT GCAGGAAATG GAAGAATGTC CAATAAGCAA 001200 001201 GAAAAGAGCA ACATGGGAGA CTATTCTTGA TGGGAAGCTA TGGACTAC |
Predicted Small Protein
Name | NONHSAT052821_smProtein_944:1111 |
Length | 56 |
Molecular weight | 6620.823 |
Aromaticity | 0.0727272727273 |
Instability index | 60.0363636364 |
Isoelectric point | 10.9631958008 |
Runs | 10 |
Runs residual | 0.030303030303 |
Runs probability | 0.039233350998 |
Amino acid sequence | MVKSYSLLFRVTRPRRREFNGMINGETMKILMSVKSFQPEENEIVRMGKRHLLHK |
Secondary structure | LLLEEEEEEEELLLLLLLLLLLLLLHHHEEEEEELLLLLLHHHHHHHLHHHHLLL |
PRMN | - |
PiMo | - |