Difference between revisions of "NONHSAT075077"
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sequence = <dnaseq>ATGGCGGCCAACATGTACCAGGTAGGAGATTTTGTCTACTTTGAGAATTCCTCCAGCAATCCATAAATAATCAGGATAGAAAATCTCGACAAGACTGCAAGTGGCAACATGGAAGCAAAAGTAGTATGCTTTTACAGATTACATGATATTTTTAACACACTGATAATGCTTGTGGAGAAGCATGCTAAAGAAATTGAGGAAGAATCTGAAACAATAGTTGACCCTTACTTGACCAATACTCAGAAACATCAATCAAAACATAAGTTACTTTCTTTGTTACCCCAATATGAATCTTTGCCTTCAACACATATTAGGGGAAAATGCAGTGTTGGCTTATGAATGAGACAGAATCAGTATTGTCATATCTTCATAAAAAGGATACTTTCTTCTACTTATTGATCATGACCCCTCATCGAAAACACTATTAGCTGATGAAGGTGAATTCAGAATGGGACCTAGATATCAAGTAGATGTCCCAGAAATGCTCATAGAAGGAGAATCAGATGAGAGGGAGCAGTGAAAATGGAAAGTTAAAGTTTGGGGATCCAAATAGCCCACTTAAAGATTGATCAATTAACCAGTTTTTAATTGTAGCAAGTGCTATTGGGACACTCCCTAGACCTCTCGATTGCAGCAGTTCTTTGAGGCAGCCTAGTTTGCATATGAGTGCTGCTGCAGCTTCCCAAGACATCACCTTCTTTCATGCTATCAATACATTGCGTAGACATAGCTATGATTTGAGCAGTGCAATTAGTGTCTCAGTACCACTTGCAGAAGCTGTTTTATGCAGAGATAAATTGGAAGAATGGTCAGCCTCTTAAGCTAGCTTATTCGAAGAGGTACTGGAAAAAATATGGCAAAGACTTCAACGACATATGCCAAAACTTTTTCCCTTGGAAATCATTGACTAGCATCACTGAATGTTATTTCTTGTGGAGAACTACTGACAGATATGTGCAACAGAAATGGTTAAAAGCAGCAGAAACTGAGAGTAAGCTGAAACAAGTATATATCCCAATTTACAGGAAACCAAATCCCAACCAAATATCTACCAGCAATGGCAAGCCTGGTGCTATGAGTGAAACCATGAGGTTGACATTCCTGCCTCAGAATCCCCTTGTAGTGCAAGCCTGGGAGGGCTGCTGTGCTACACAGTCTAACCAGTAGTATTCTTGGGGCCCACCTAATATGCAGTGCAATTTGTTGGCTTTATTGAGAAAAATATGGAGACCTGAAAATGCCCACCCAGTCAGAAGAAAAGTTATCTCCTAGCCCAATTACAGAGGACTCTCATGTTAGAAATGCTGCCAGGCCATTCAAGGGATGCCACTCCAAAACACTGTCAGTACAAAGTCTGCAGTGAAAACTCACCAAGCTTTCTTCCTTCATACTGTGTTTTTCACAAAATTTGCTCTCCATTTATTCAAAAGTATCCTCTGGCTGAAGCAGGCAGCAAGATGGCCACTTGTAGCTATTAAT</dnaseq>| | sequence = <dnaseq>ATGGCGGCCAACATGTACCAGGTAGGAGATTTTGTCTACTTTGAGAATTCCTCCAGCAATCCATAAATAATCAGGATAGAAAATCTCGACAAGACTGCAAGTGGCAACATGGAAGCAAAAGTAGTATGCTTTTACAGATTACATGATATTTTTAACACACTGATAATGCTTGTGGAGAAGCATGCTAAAGAAATTGAGGAAGAATCTGAAACAATAGTTGACCCTTACTTGACCAATACTCAGAAACATCAATCAAAACATAAGTTACTTTCTTTGTTACCCCAATATGAATCTTTGCCTTCAACACATATTAGGGGAAAATGCAGTGTTGGCTTATGAATGAGACAGAATCAGTATTGTCATATCTTCATAAAAAGGATACTTTCTTCTACTTATTGATCATGACCCCTCATCGAAAACACTATTAGCTGATGAAGGTGAATTCAGAATGGGACCTAGATATCAAGTAGATGTCCCAGAAATGCTCATAGAAGGAGAATCAGATGAGAGGGAGCAGTGAAAATGGAAAGTTAAAGTTTGGGGATCCAAATAGCCCACTTAAAGATTGATCAATTAACCAGTTTTTAATTGTAGCAAGTGCTATTGGGACACTCCCTAGACCTCTCGATTGCAGCAGTTCTTTGAGGCAGCCTAGTTTGCATATGAGTGCTGCTGCAGCTTCCCAAGACATCACCTTCTTTCATGCTATCAATACATTGCGTAGACATAGCTATGATTTGAGCAGTGCAATTAGTGTCTCAGTACCACTTGCAGAAGCTGTTTTATGCAGAGATAAATTGGAAGAATGGTCAGCCTCTTAAGCTAGCTTATTCGAAGAGGTACTGGAAAAAATATGGCAAAGACTTCAACGACATATGCCAAAACTTTTTCCCTTGGAAATCATTGACTAGCATCACTGAATGTTATTTCTTGTGGAGAACTACTGACAGATATGTGCAACAGAAATGGTTAAAAGCAGCAGAAACTGAGAGTAAGCTGAAACAAGTATATATCCCAATTTACAGGAAACCAAATCCCAACCAAATATCTACCAGCAATGGCAAGCCTGGTGCTATGAGTGAAACCATGAGGTTGACATTCCTGCCTCAGAATCCCCTTGTAGTGCAAGCCTGGGAGGGCTGCTGTGCTACACAGTCTAACCAGTAGTATTCTTGGGGCCCACCTAATATGCAGTGCAATTTGTTGGCTTTATTGAGAAAAATATGGAGACCTGAAAATGCCCACCCAGTCAGAAGAAAAGTTATCTCCTAGCCCAATTACAGAGGACTCTCATGTTAGAAATGCTGCCAGGCCATTCAAGGGATGCCACTCCAAAACACTGTCAGTACAAAGTCTGCAGTGAAAACTCACCAAGCTTTCTTCCTTCATACTGTGTTTTTCACAAAATTTGCTCTCCATTTATTCAAAAGTATCCTCTGGCTGAAGCAGGCAGCAAGATGGCCACTTGTAGCTATTAAT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG029616]] | + | [[Category:Intergenic]][[Category:NONHSAG029616]][[Category:Transcripts]] |
Latest revision as of 23:37, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT075077 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1479 nt |
Genomic location |
chr2-:158817922..158819400 |
Exon number |
1 |
Exons |
158817922..158819400 |
Genome context |
|
Sequence |
000001 ATGGCGGCCA ACATGTACCA GGTAGGAGAT TTTGTCTACT TTGAGAATTC CTCCAGCAAT CCATAAATAA TCAGGATAGA 000080
000081 AAATCTCGAC AAGACTGCAA GTGGCAACAT GGAAGCAAAA GTAGTATGCT TTTACAGATT ACATGATATT TTTAACACAC 000160 000161 TGATAATGCT TGTGGAGAAG CATGCTAAAG AAATTGAGGA AGAATCTGAA ACAATAGTTG ACCCTTACTT GACCAATACT 000240 000241 CAGAAACATC AATCAAAACA TAAGTTACTT TCTTTGTTAC CCCAATATGA ATCTTTGCCT TCAACACATA TTAGGGGAAA 000320 000321 ATGCAGTGTT GGCTTATGAA TGAGACAGAA TCAGTATTGT CATATCTTCA TAAAAAGGAT ACTTTCTTCT ACTTATTGAT 000400 000401 CATGACCCCT CATCGAAAAC ACTATTAGCT GATGAAGGTG AATTCAGAAT GGGACCTAGA TATCAAGTAG ATGTCCCAGA 000480 000481 AATGCTCATA GAAGGAGAAT CAGATGAGAG GGAGCAGTGA AAATGGAAAG TTAAAGTTTG GGGATCCAAA TAGCCCACTT 000560 000561 AAAGATTGAT CAATTAACCA GTTTTTAATT GTAGCAAGTG CTATTGGGAC ACTCCCTAGA CCTCTCGATT GCAGCAGTTC 000640 000641 TTTGAGGCAG CCTAGTTTGC ATATGAGTGC TGCTGCAGCT TCCCAAGACA TCACCTTCTT TCATGCTATC AATACATTGC 000720 000721 GTAGACATAG CTATGATTTG AGCAGTGCAA TTAGTGTCTC AGTACCACTT GCAGAAGCTG TTTTATGCAG AGATAAATTG 000800 000801 GAAGAATGGT CAGCCTCTTA AGCTAGCTTA TTCGAAGAGG TACTGGAAAA AATATGGCAA AGACTTCAAC GACATATGCC 000880 000881 AAAACTTTTT CCCTTGGAAA TCATTGACTA GCATCACTGA ATGTTATTTC TTGTGGAGAA CTACTGACAG ATATGTGCAA 000960 000961 CAGAAATGGT TAAAAGCAGC AGAAACTGAG AGTAAGCTGA AACAAGTATA TATCCCAATT TACAGGAAAC CAAATCCCAA 001040 001041 CCAAATATCT ACCAGCAATG GCAAGCCTGG TGCTATGAGT GAAACCATGA GGTTGACATT CCTGCCTCAG AATCCCCTTG 001120 001121 TAGTGCAAGC CTGGGAGGGC TGCTGTGCTA CACAGTCTAA CCAGTAGTAT TCTTGGGGCC CACCTAATAT GCAGTGCAAT 001200 001201 TTGTTGGCTT TATTGAGAAA AATATGGAGA CCTGAAAATG CCCACCCAGT CAGAAGAAAA GTTATCTCCT AGCCCAATTA 001280 001281 CAGAGGACTC TCATGTTAGA AATGCTGCCA GGCCATTCAA GGGATGCCAC TCCAAAACAC TGTCAGTACA AAGTCTGCAG 001360 001361 TGAAAACTCA CCAAGCTTTC TTCCTTCATA CTGTGTTTTT CACAAAATTT GCTCTCCATT TATTCAAAAG TATCCTCTGG 001440 001441 CTGAAGCAGG CAGCAAGATG GCCACTTGTA GCTATTAAT |
Predicted Small Protein
Name | NONHSAT075077_smProtein_1292:1477 |
Length | 62 |
Molecular weight | 6859.9267 |
Aromaticity | 0.114754098361 |
Instability index | 53.1245901639 |
Isoelectric point | 8.32513427734 |
Runs | 9 |
Runs residual | 0.00527605049934 |
Runs probability | 0.0308445700603 |
Amino acid sequence | MLEMLPGHSRDATPKHCQYKVCSENSPSFLPSYCVFHKICSPFIQKYPLAEAGSKMATCS Y |
Secondary structure | LLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLEEEEEELLHHHLLLLHHHLLLLLLLLL L |
PRMN | - |
PiMo | - |