Difference between revisions of "NONHSAT075077"

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sequence = <dnaseq>ATGGCGGCCAACATGTACCAGGTAGGAGATTTTGTCTACTTTGAGAATTCCTCCAGCAATCCATAAATAATCAGGATAGAAAATCTCGACAAGACTGCAAGTGGCAACATGGAAGCAAAAGTAGTATGCTTTTACAGATTACATGATATTTTTAACACACTGATAATGCTTGTGGAGAAGCATGCTAAAGAAATTGAGGAAGAATCTGAAACAATAGTTGACCCTTACTTGACCAATACTCAGAAACATCAATCAAAACATAAGTTACTTTCTTTGTTACCCCAATATGAATCTTTGCCTTCAACACATATTAGGGGAAAATGCAGTGTTGGCTTATGAATGAGACAGAATCAGTATTGTCATATCTTCATAAAAAGGATACTTTCTTCTACTTATTGATCATGACCCCTCATCGAAAACACTATTAGCTGATGAAGGTGAATTCAGAATGGGACCTAGATATCAAGTAGATGTCCCAGAAATGCTCATAGAAGGAGAATCAGATGAGAGGGAGCAGTGAAAATGGAAAGTTAAAGTTTGGGGATCCAAATAGCCCACTTAAAGATTGATCAATTAACCAGTTTTTAATTGTAGCAAGTGCTATTGGGACACTCCCTAGACCTCTCGATTGCAGCAGTTCTTTGAGGCAGCCTAGTTTGCATATGAGTGCTGCTGCAGCTTCCCAAGACATCACCTTCTTTCATGCTATCAATACATTGCGTAGACATAGCTATGATTTGAGCAGTGCAATTAGTGTCTCAGTACCACTTGCAGAAGCTGTTTTATGCAGAGATAAATTGGAAGAATGGTCAGCCTCTTAAGCTAGCTTATTCGAAGAGGTACTGGAAAAAATATGGCAAAGACTTCAACGACATATGCCAAAACTTTTTCCCTTGGAAATCATTGACTAGCATCACTGAATGTTATTTCTTGTGGAGAACTACTGACAGATATGTGCAACAGAAATGGTTAAAAGCAGCAGAAACTGAGAGTAAGCTGAAACAAGTATATATCCCAATTTACAGGAAACCAAATCCCAACCAAATATCTACCAGCAATGGCAAGCCTGGTGCTATGAGTGAAACCATGAGGTTGACATTCCTGCCTCAGAATCCCCTTGTAGTGCAAGCCTGGGAGGGCTGCTGTGCTACACAGTCTAACCAGTAGTATTCTTGGGGCCCACCTAATATGCAGTGCAATTTGTTGGCTTTATTGAGAAAAATATGGAGACCTGAAAATGCCCACCCAGTCAGAAGAAAAGTTATCTCCTAGCCCAATTACAGAGGACTCTCATGTTAGAAATGCTGCCAGGCCATTCAAGGGATGCCACTCCAAAACACTGTCAGTACAAAGTCTGCAGTGAAAACTCACCAAGCTTTCTTCCTTCATACTGTGTTTTTCACAAAATTTGCTCTCCATTTATTCAAAAGTATCCTCTGGCTGAAGCAGGCAGCAAGATGGCCACTTGTAGCTATTAAT</dnaseq>|
 
sequence = <dnaseq>ATGGCGGCCAACATGTACCAGGTAGGAGATTTTGTCTACTTTGAGAATTCCTCCAGCAATCCATAAATAATCAGGATAGAAAATCTCGACAAGACTGCAAGTGGCAACATGGAAGCAAAAGTAGTATGCTTTTACAGATTACATGATATTTTTAACACACTGATAATGCTTGTGGAGAAGCATGCTAAAGAAATTGAGGAAGAATCTGAAACAATAGTTGACCCTTACTTGACCAATACTCAGAAACATCAATCAAAACATAAGTTACTTTCTTTGTTACCCCAATATGAATCTTTGCCTTCAACACATATTAGGGGAAAATGCAGTGTTGGCTTATGAATGAGACAGAATCAGTATTGTCATATCTTCATAAAAAGGATACTTTCTTCTACTTATTGATCATGACCCCTCATCGAAAACACTATTAGCTGATGAAGGTGAATTCAGAATGGGACCTAGATATCAAGTAGATGTCCCAGAAATGCTCATAGAAGGAGAATCAGATGAGAGGGAGCAGTGAAAATGGAAAGTTAAAGTTTGGGGATCCAAATAGCCCACTTAAAGATTGATCAATTAACCAGTTTTTAATTGTAGCAAGTGCTATTGGGACACTCCCTAGACCTCTCGATTGCAGCAGTTCTTTGAGGCAGCCTAGTTTGCATATGAGTGCTGCTGCAGCTTCCCAAGACATCACCTTCTTTCATGCTATCAATACATTGCGTAGACATAGCTATGATTTGAGCAGTGCAATTAGTGTCTCAGTACCACTTGCAGAAGCTGTTTTATGCAGAGATAAATTGGAAGAATGGTCAGCCTCTTAAGCTAGCTTATTCGAAGAGGTACTGGAAAAAATATGGCAAAGACTTCAACGACATATGCCAAAACTTTTTCCCTTGGAAATCATTGACTAGCATCACTGAATGTTATTTCTTGTGGAGAACTACTGACAGATATGTGCAACAGAAATGGTTAAAAGCAGCAGAAACTGAGAGTAAGCTGAAACAAGTATATATCCCAATTTACAGGAAACCAAATCCCAACCAAATATCTACCAGCAATGGCAAGCCTGGTGCTATGAGTGAAACCATGAGGTTGACATTCCTGCCTCAGAATCCCCTTGTAGTGCAAGCCTGGGAGGGCTGCTGTGCTACACAGTCTAACCAGTAGTATTCTTGGGGCCCACCTAATATGCAGTGCAATTTGTTGGCTTTATTGAGAAAAATATGGAGACCTGAAAATGCCCACCCAGTCAGAAGAAAAGTTATCTCCTAGCCCAATTACAGAGGACTCTCATGTTAGAAATGCTGCCAGGCCATTCAAGGGATGCCACTCCAAAACACTGTCAGTACAAAGTCTGCAGTGAAAACTCACCAAGCTTTCTTCCTTCATACTGTGTTTTTCACAAAATTTGCTCTCCATTTATTCAAAAGTATCCTCTGGCTGAAGCAGGCAGCAAGATGGCCACTTGTAGCTATTAAT</dnaseq>|
 
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}}
[[Category:Intergenic]][[Category:NONHSAG029616]]
+
[[Category:Intergenic]][[Category:NONHSAG029616]][[Category:Transcripts]]

Latest revision as of 23:37, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT075077

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1479 nt

Genomic location

chr2-:158817922..158819400

Exon number

1

Exons

158817922..158819400

Genome context

Sequence
000001 ATGGCGGCCA ACATGTACCA GGTAGGAGAT TTTGTCTACT TTGAGAATTC CTCCAGCAAT CCATAAATAA TCAGGATAGA 000080
000081 AAATCTCGAC AAGACTGCAA GTGGCAACAT GGAAGCAAAA GTAGTATGCT TTTACAGATT ACATGATATT TTTAACACAC 000160
000161 TGATAATGCT TGTGGAGAAG CATGCTAAAG AAATTGAGGA AGAATCTGAA ACAATAGTTG ACCCTTACTT GACCAATACT 000240
000241 CAGAAACATC AATCAAAACA TAAGTTACTT TCTTTGTTAC CCCAATATGA ATCTTTGCCT TCAACACATA TTAGGGGAAA 000320
000321 ATGCAGTGTT GGCTTATGAA TGAGACAGAA TCAGTATTGT CATATCTTCA TAAAAAGGAT ACTTTCTTCT ACTTATTGAT 000400
000401 CATGACCCCT CATCGAAAAC ACTATTAGCT GATGAAGGTG AATTCAGAAT GGGACCTAGA TATCAAGTAG ATGTCCCAGA 000480
000481 AATGCTCATA GAAGGAGAAT CAGATGAGAG GGAGCAGTGA AAATGGAAAG TTAAAGTTTG GGGATCCAAA TAGCCCACTT 000560
000561 AAAGATTGAT CAATTAACCA GTTTTTAATT GTAGCAAGTG CTATTGGGAC ACTCCCTAGA CCTCTCGATT GCAGCAGTTC 000640
000641 TTTGAGGCAG CCTAGTTTGC ATATGAGTGC TGCTGCAGCT TCCCAAGACA TCACCTTCTT TCATGCTATC AATACATTGC 000720
000721 GTAGACATAG CTATGATTTG AGCAGTGCAA TTAGTGTCTC AGTACCACTT GCAGAAGCTG TTTTATGCAG AGATAAATTG 000800
000801 GAAGAATGGT CAGCCTCTTA AGCTAGCTTA TTCGAAGAGG TACTGGAAAA AATATGGCAA AGACTTCAAC GACATATGCC 000880
000881 AAAACTTTTT CCCTTGGAAA TCATTGACTA GCATCACTGA ATGTTATTTC TTGTGGAGAA CTACTGACAG ATATGTGCAA 000960
000961 CAGAAATGGT TAAAAGCAGC AGAAACTGAG AGTAAGCTGA AACAAGTATA TATCCCAATT TACAGGAAAC CAAATCCCAA 001040
001041 CCAAATATCT ACCAGCAATG GCAAGCCTGG TGCTATGAGT GAAACCATGA GGTTGACATT CCTGCCTCAG AATCCCCTTG 001120
001121 TAGTGCAAGC CTGGGAGGGC TGCTGTGCTA CACAGTCTAA CCAGTAGTAT TCTTGGGGCC CACCTAATAT GCAGTGCAAT 001200
001201 TTGTTGGCTT TATTGAGAAA AATATGGAGA CCTGAAAATG CCCACCCAGT CAGAAGAAAA GTTATCTCCT AGCCCAATTA 001280
001281 CAGAGGACTC TCATGTTAGA AATGCTGCCA GGCCATTCAA GGGATGCCAC TCCAAAACAC TGTCAGTACA AAGTCTGCAG 001360
001361 TGAAAACTCA CCAAGCTTTC TTCCTTCATA CTGTGTTTTT CACAAAATTT GCTCTCCATT TATTCAAAAG TATCCTCTGG 001440
001441 CTGAAGCAGG CAGCAAGATG GCCACTTGTA GCTATTAAT
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Predicted Small Protein

Name NONHSAT075077_smProtein_1292:1477
Length 62
Molecular weight 6859.9267
Aromaticity 0.114754098361
Instability index 53.1245901639
Isoelectric point 8.32513427734
Runs 9
Runs residual 0.00527605049934
Runs probability 0.0308445700603
Amino acid sequence MLEMLPGHSRDATPKHCQYKVCSENSPSFLPSYCVFHKICSPFIQKYPLAEAGSKMATCS
Y
Secondary structure LLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLEEEEEELLHHHLLLLHHHLLLLLLLLL
L
PRMN -
PiMo -