Difference between revisions of "NONHSAT102562"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>ATTGGCAGAGCAAAAAGGGAACCAAGATCTACCAGTTCATTGGTAAACACTACTCTCTAGCTATTGACAAGAAGATGCCCTGAGATTTTACGTCAATTTCTTGAAGACAGAGACAGCCAAGTCTCTGCCTGAAATTTAAAAGCTACTTGCGTCTTAGGGaaaaaaaaaaaaaaaaaaaaaaCCAACTTTGTAGACAAAGCAAGCAAAGAAGAGCCTAAAGCAGCCTCCTCAACATGAAATAATATTTTATAAAAATGTTGTCAATACAGATGTGGTTTACAAATATATTTTTGAGGGGTTTACTTTCTAGCTATCTCACCATGCAAGAGCAGCATGGTTTCCTTAACTTTGGAACTTGCTTTATGTATCCACCAATAGGTATCACCTACTGGCCTATGAGTGGCATGAGCTAGGGCCTGTGGTAGAACATACTCTGGCTAATGTTTTATATCATATGAGAACAAAAGTCAATGTGAGGTAGATTCCTCTATGGAAA</dnaseq>|
 
sequence = <dnaseq>ATTGGCAGAGCAAAAAGGGAACCAAGATCTACCAGTTCATTGGTAAACACTACTCTCTAGCTATTGACAAGAAGATGCCCTGAGATTTTACGTCAATTTCTTGAAGACAGAGACAGCCAAGTCTCTGCCTGAAATTTAAAAGCTACTTGCGTCTTAGGGaaaaaaaaaaaaaaaaaaaaaaCCAACTTTGTAGACAAAGCAAGCAAAGAAGAGCCTAAAGCAGCCTCCTCAACATGAAATAATATTTTATAAAAATGTTGTCAATACAGATGTGGTTTACAAATATATTTTTGAGGGGTTTACTTTCTAGCTATCTCACCATGCAAGAGCAGCATGGTTTCCTTAACTTTGGAACTTGCTTTATGTATCCACCAATAGGTATCACCTACTGGCCTATGAGTGGCATGAGCTAGGGCCTGTGGTAGAACATACTCTGGCTAATGTTTTATATCATATGAGAACAAAAGTCAATGTGAGGTAGATTCCTCTATGGAAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG040934]]

Revision as of 08:35, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT102562

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

496 nt

Genomic location

chr5+:85698283..85698778

Exon number

1

Exons

85698283..85698778

Genome context

Sequence
000001 ATTGGCAGAG CAAAAAGGGA ACCAAGATCT ACCAGTTCAT TGGTAAACAC TACTCTCTAG CTATTGACAA GAAGATGCCC 000080
000081 TGAGATTTTA CGTCAATTTC TTGAAGACAG AGACAGCCAA GTCTCTGCCT GAAATTTAAA AGCTACTTGC GTCTTAGGGa 000160
000161 aaaaaaaaaa aaaaaaaaaa aCCAACTTTG TAGACAAAGC AAGCAAAGAA GAGCCTAAAG CAGCCTCCTC AACATGAAAT 000240
000241 AATATTTTAT AAAAATGTTG TCAATACAGA TGTGGTTTAC AAATATATTT TTGAGGGGTT TACTTTCTAG CTATCTCACC 000320
000321 ATGCAAGAGC AGCATGGTTT CCTTAACTTT GGAACTTGCT TTATGTATCC ACCAATAGGT ATCACCTACT GGCCTATGAG 000400
000401 TGGCATGAGC TAGGGCCTGT GGTAGAACAT ACTCTGGCTA ATGTTTTATA TCATATGAGA ACAAAAGTCA ATGTGAGGTA 000480
000481 GATTCCTCTA TGGAAA
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Predicted Small Protein

Name NONHSAT102562_smProtein_254:412
Length 53
Molecular weight 6089.1546
Aromaticity 0.192307692308
Instability index 43.0365384615
Isoelectric point 6.49713134766
Runs 8
Runs residual 0.00347674923946
Runs probability 0.0326576576577
Amino acid sequence MLSIQMWFTNIFLRGLLSSYLTMQEQHGFLNFGTCFMYPPIGITYWPMSGMS
Secondary structure LLLEEHHHHHHHHHHHHHHHHHHHHHHLLLLLLEEEEELLLLEEEELLLLLL
PRMN -
PiMo -