Difference between revisions of "NONHSAT117416"

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sequence = <dnaseq>AGGCTGGGGGAGAAGTTAAAGCCAGAGGAGGGGCAGGAATGTCTGAGGTGGCAACACTTCTCTTCAGCCAGACAGCACTGGCCAGTTTGGAGTCTGTCCATCCTGCAGGCCACAAGCTCTGGatgaggaacttgaggcaagtcaccagcccctgatcatttcgcctaaaagagcaaggactagagttcctgacctccaggccagtccctgatccctGACCTAATGTTATCGCGGAATGATGGTAAGTAAAGTGTCTCTTGCATCTGCATAGAGAGGGTCCTGGGAGCTTAGGAAGTGATGGGGAACAGTGATGTATGCAGCTCATGACTAGGTGGACAGGCCTCTGGGGACAGCTGGTACAGGAGGGAAAGGGACCTCACGGGAGGCCCAGAAACCTGGTAAGAGGTGAGGTATTAAGGTCTGGGATGGAGAAGCTCTGAGGGTATATTTTTCTGCCTCTAAAACTGTTGGAGAGGGAATCTGAGAAAGCTGCAACCAACCAGGAGGCTGGGGTACGCTGGAGAAGGAATGGGCTTCCTAACCTTGAGCCCTCTTCCCTGAAGATATATGTATCTACGGGGGCCTGGGGCTGGGCGGGCTCCTGCTTCTGGCAGTGGTCCTTCTGTCCGCCTGCCTGTGTTGGCTGCATCGAAGAGGTGAGCGCTGCACTCCCTCCCTCCCCCTGCAGCAGTGCCCCCTGTGCCCCCACCCCCACACGCTTTCCCACTGCTTTCCCAGAACACTGCCTGGCCCTGGAGCCACTGGGAAGCCAACAGGGGAGTCCACGCCTGCTGGTGGGGGGAGCCCGGGAGGGCCCGGGAGAAGCACAAAGGGTGGGCTGTGTTGAGCTTCTTCTTTTCTTCCAGTAAAGAGGCTGGAGAGGAGCTGGGTGAGTCTGGGGACAGGGAAGGGGGAGGGCAAGAGAGATCCTGAGTGGGTGAGTGGGGAGAAGCATGGCTGAGCGCTGAGAGGAGGGTTGGGGACGGGAGACAAGGAGAGAGAAAGTAGGAGCATGAGAGAGGCAGAGAAAATCGAGGCAAAagagaaagagaaaatgagacagaaaccaagagaaaaagtgagacagaggataggagagacagggagaaaatgagagtgagagagacacaaagagaagagcaatgaaagagagagagagagagagGCTCCAGAAccaggcacagtggctcacgtctgtcattccagctatcgcaaggctgaggcaggaagatagcttgagctcaggggttgaagacaatcctggacaacatagtgggactctgtctccaaagaaaaaagagagagagagagagagagagagagagggagagagagagagagagagggagagaAGTAAGAAAGGCTGGAGGTGGGAGCAGAACTCACAGGGAAGGATCTGACGGCATCGCCTCCCATCAGCACCTTCTGTCCTGGTCCCAGGCCCAGGGCTCCTCAGAGCAGGAACTCCACTATGCATCTCTGCAGAGGCTGCCAGTGCCCAGCAGTGAGGGACCTGACCTCAGGGGCAGAGACAAGAGAGGCACCAAGGAGGATCCAAGAGCTGACTATGCCTGCATTGCTGAGAACAAACCCACCTGAGCACCCCAGACACCTTCCTCAACCCAGGCGGGTGGACAGGGTCCCCCTGTGGTCCAGCCAGTAAAAACCATGGTCCCCCCACTTCTGTGTCTCAGTCCTCTCAGTCCATCTCGAGCCTCCGTTCAAATTGATCATCATCAAAACTTATGTGGCTTTTTGACCTTTGAATAGGGaattttttaaattttttaaaaattaaaataaaaaaaaCACATGGCTCACCCTTCCACCCA</dnaseq>|
 
sequence = <dnaseq>AGGCTGGGGGAGAAGTTAAAGCCAGAGGAGGGGCAGGAATGTCTGAGGTGGCAACACTTCTCTTCAGCCAGACAGCACTGGCCAGTTTGGAGTCTGTCCATCCTGCAGGCCACAAGCTCTGGatgaggaacttgaggcaagtcaccagcccctgatcatttcgcctaaaagagcaaggactagagttcctgacctccaggccagtccctgatccctGACCTAATGTTATCGCGGAATGATGGTAAGTAAAGTGTCTCTTGCATCTGCATAGAGAGGGTCCTGGGAGCTTAGGAAGTGATGGGGAACAGTGATGTATGCAGCTCATGACTAGGTGGACAGGCCTCTGGGGACAGCTGGTACAGGAGGGAAAGGGACCTCACGGGAGGCCCAGAAACCTGGTAAGAGGTGAGGTATTAAGGTCTGGGATGGAGAAGCTCTGAGGGTATATTTTTCTGCCTCTAAAACTGTTGGAGAGGGAATCTGAGAAAGCTGCAACCAACCAGGAGGCTGGGGTACGCTGGAGAAGGAATGGGCTTCCTAACCTTGAGCCCTCTTCCCTGAAGATATATGTATCTACGGGGGCCTGGGGCTGGGCGGGCTCCTGCTTCTGGCAGTGGTCCTTCTGTCCGCCTGCCTGTGTTGGCTGCATCGAAGAGGTGAGCGCTGCACTCCCTCCCTCCCCCTGCAGCAGTGCCCCCTGTGCCCCCACCCCCACACGCTTTCCCACTGCTTTCCCAGAACACTGCCTGGCCCTGGAGCCACTGGGAAGCCAACAGGGGAGTCCACGCCTGCTGGTGGGGGGAGCCCGGGAGGGCCCGGGAGAAGCACAAAGGGTGGGCTGTGTTGAGCTTCTTCTTTTCTTCCAGTAAAGAGGCTGGAGAGGAGCTGGGTGAGTCTGGGGACAGGGAAGGGGGAGGGCAAGAGAGATCCTGAGTGGGTGAGTGGGGAGAAGCATGGCTGAGCGCTGAGAGGAGGGTTGGGGACGGGAGACAAGGAGAGAGAAAGTAGGAGCATGAGAGAGGCAGAGAAAATCGAGGCAAAagagaaagagaaaatgagacagaaaccaagagaaaaagtgagacagaggataggagagacagggagaaaatgagagtgagagagacacaaagagaagagcaatgaaagagagagagagagagagGCTCCAGAAccaggcacagtggctcacgtctgtcattccagctatcgcaaggctgaggcaggaagatagcttgagctcaggggttgaagacaatcctggacaacatagtgggactctgtctccaaagaaaaaagagagagagagagagagagagagagagggagagagagagagagagagggagagaAGTAAGAAAGGCTGGAGGTGGGAGCAGAACTCACAGGGAAGGATCTGACGGCATCGCCTCCCATCAGCACCTTCTGTCCTGGTCCCAGGCCCAGGGCTCCTCAGAGCAGGAACTCCACTATGCATCTCTGCAGAGGCTGCCAGTGCCCAGCAGTGAGGGACCTGACCTCAGGGGCAGAGACAAGAGAGGCACCAAGGAGGATCCAAGAGCTGACTATGCCTGCATTGCTGAGAACAAACCCACCTGAGCACCCCAGACACCTTCCTCAACCCAGGCGGGTGGACAGGGTCCCCCTGTGGTCCAGCCAGTAAAAACCATGGTCCCCCCACTTCTGTGTCTCAGTCCTCTCAGTCCATCTCGAGCCTCCGTTCAAATTGATCATCATCAAAACTTATGTGGCTTTTTGACCTTTGAATAGGGaattttttaaattttttaaaaattaaaataaaaaaaaCACATGGCTCACCCTTCCACCCA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG046117]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:NONHSAG046117]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 06:17, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT117416

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1832 nt

Genomic location

chr6_mann_hap4+:2896855..2899570

Exon number

2

Exons

2896855..2896976,2897861..2899570

Genome context

Sequence
000001 AGGCTGGGGG AGAAGTTAAA GCCAGAGGAG GGGCAGGAAT GTCTGAGGTG GCAACACTTC TCTTCAGCCA GACAGCACTG 000080
000081 GCCAGTTTGG AGTCTGTCCA TCCTGCAGGC CACAAGCTCT GGatgaggaa cttgaggcaa gtcaccagcc cctgatcatt 000160
000161 tcgcctaaaa gagcaaggac tagagttcct gacctccagg ccagtccctg atccctGACC TAATGTTATC GCGGAATGAT 000240
000241 GGTAAGTAAA GTGTCTCTTG CATCTGCATA GAGAGGGTCC TGGGAGCTTA GGAAGTGATG GGGAACAGTG ATGTATGCAG 000320
000321 CTCATGACTA GGTGGACAGG CCTCTGGGGA CAGCTGGTAC AGGAGGGAAA GGGACCTCAC GGGAGGCCCA GAAACCTGGT 000400
000401 AAGAGGTGAG GTATTAAGGT CTGGGATGGA GAAGCTCTGA GGGTATATTT TTCTGCCTCT AAAACTGTTG GAGAGGGAAT 000480
000481 CTGAGAAAGC TGCAACCAAC CAGGAGGCTG GGGTACGCTG GAGAAGGAAT GGGCTTCCTA ACCTTGAGCC CTCTTCCCTG 000560
000561 AAGATATATG TATCTACGGG GGCCTGGGGC TGGGCGGGCT CCTGCTTCTG GCAGTGGTCC TTCTGTCCGC CTGCCTGTGT 000640
000641 TGGCTGCATC GAAGAGGTGA GCGCTGCACT CCCTCCCTCC CCCTGCAGCA GTGCCCCCTG TGCCCCCACC CCCACACGCT 000720
000721 TTCCCACTGC TTTCCCAGAA CACTGCCTGG CCCTGGAGCC ACTGGGAAGC CAACAGGGGA GTCCACGCCT GCTGGTGGGG 000800
000801 GGAGCCCGGG AGGGCCCGGG AGAAGCACAA AGGGTGGGCT GTGTTGAGCT TCTTCTTTTC TTCCAGTAAA GAGGCTGGAG 000880
000881 AGGAGCTGGG TGAGTCTGGG GACAGGGAAG GGGGAGGGCA AGAGAGATCC TGAGTGGGTG AGTGGGGAGA AGCATGGCTG 000960
000961 AGCGCTGAGA GGAGGGTTGG GGACGGGAGA CAAGGAGAGA GAAAGTAGGA GCATGAGAGA GGCAGAGAAA ATCGAGGCAA 001040
001041 Aagagaaaga gaaaatgaga cagaaaccaa gagaaaaagt gagacagagg ataggagaga cagggagaaa atgagagtga 001120
001121 gagagacaca aagagaagag caatgaaaga gagagagaga gagagGCTCC AGAAccaggc acagtggctc acgtctgtca 001200
001201 ttccagctat cgcaaggctg aggcaggaag atagcttgag ctcaggggtt gaagacaatc ctggacaaca tagtgggact 001280
001281 ctgtctccaa agaaaaaaga gagagagaga gagagagaga gagagggaga gagagagaga gagagggaga gaAGTAAGAA 001360
001361 AGGCTGGAGG TGGGAGCAGA ACTCACAGGG AAGGATCTGA CGGCATCGCC TCCCATCAGC ACCTTCTGTC CTGGTCCCAG 001440
001441 GCCCAGGGCT CCTCAGAGCA GGAACTCCAC TATGCATCTC TGCAGAGGCT GCCAGTGCCC AGCAGTGAGG GACCTGACCT 001520
001521 CAGGGGCAGA GACAAGAGAG GCACCAAGGA GGATCCAAGA GCTGACTATG CCTGCATTGC TGAGAACAAA CCCACCTGAG 001600
001601 CACCCCAGAC ACCTTCCTCA ACCCAGGCGG GTGGACAGGG TCCCCCTGTG GTCCAGCCAG TAAAAACCAT GGTCCCCCCA 001680
001681 CTTCTGTGTC TCAGTCCTCT CAGTCCATCT CGAGCCTCCG TTCAAATTGA TCATCATCAA AACTTATGTG GCTTTTTGAC 001760
001761 CTTTGAATAG GGaatttttt aaatttttta aaaattaaaa taaaaaaaaC ACATGGCTCA CCCTTCCACC CA
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Predicted Small Protein

Name NONHSAT117416_smProtein_1142:1399
Length 86
Molecular weight 10212.1327
Aromaticity 0.0352941176471
Instability index 51.9082352941
Isoelectric point 9.96099853516
Runs 9
Runs residual 0.0306595365419
Runs probability 0.0358593888005
Amino acid sequence MKERERERLQNQAQWLTSVIPAIARLRQEDSLSSGVEDNPGQHSGTLSPKKKERERERER
EGERERERERSKKGWRWEQNSQGRI
Secondary structure LLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHH
LLHHHHHHHHHLLLLEEEELLLLLL
PRMN -
PiMo -