Difference between revisions of "NONHSAT131476"
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sequence = <dnaseq>CCAGTATCTCCTGCCGAGCTGCTCTGTTCCCGGCTTAGAGGACCAGGAGAAGGGGGAGCTGGAGGCTGGAGCCTGTAACACCATGGCTCGTCTCGCTCTGGATGGTGGTGGCAACAGAGATGGCAGCGCGGCTGAAGTCTTAGGAGGGCGGCCTGAGCGGTAGGAGGGTAGTCTGAGCAGTAGGAGGGGGGCTGGAGCAGTAAGATGGCGGCCGGAGCGCTAGGCGGGAGGCTGGAGCAGTAAGATGGCAGCCGGAGCGGTAGGGGGGTGGCTGGCAGCCGGAGCGGTAGGGGGGTGGCTGGCAGCTGGAGCTGCTCTTGACCAGCTAGAGGTCTAGGAGAAGGTGGGGACCATGCCCAATGCTGGCGGCTGGAGCCTTGGCCCTGGCGGCTCGCCTGGCTGCGGTTGGTGGTGGCGACGGAGACTGCATCTCTGTCAAGTAGTAGAAAGGTGGCAGGGTTTTTCTGGCATTGTCTGCCCAGCTACTCCAAGCCAGGCTGATGAAGGAGGAGTCCCCTGTGGTGACTGGAGGTTGGAGCCTGAAGATGGCACAGCTCTGTGATTCATCTCCTGCTGTTGTGGCGGCCACGGTGATGGAGACGGCAGCTCAACAGGAGCGGTAGGAGGGTACCCGTGGAGGCCAAGTGATTAATTAGCTCTCAGGACTGCTGTGTCCAGAGTTGATTCCTTCTGGTGGGTTCGTGGTGTTGCTGACTTGAAGAATGAAGCCGCCGACCTTCACGAGCGCTGATTGGTGTGTTTTACAGAGCATGGATTGGTGCGTTTTACAGAGCGCTGATTGGTACATTTCACAGAACTCGTGAGACAGTCGCAGGTGGCATGATTTGATTTGTGTGAAGGCAATGAAATGATACACAGATACACCGAAGCCTCCCAAAAGAATCCTGGTTCCAAGATTCAAGAAGATGGATTAATGTTTTTCCATTAATTGTTGGAATTTATGCCATTTTTTTACTATGTGCCATCAATTTTAAAGCACTTCTGAAAAGAGATAACAATCTACAATAGCTGGCATTTTAAATTCATAAAAATATAGTATTTTCTTCTATTTTTATACATTTATGATGCATTATTTCTTATTTCCCAGGAATTTTACTACCTTTGTTTTGAATGATTAAAAAGGAAACATAGCACCTTTTTTCAACAC</dnaseq>| | sequence = <dnaseq>CCAGTATCTCCTGCCGAGCTGCTCTGTTCCCGGCTTAGAGGACCAGGAGAAGGGGGAGCTGGAGGCTGGAGCCTGTAACACCATGGCTCGTCTCGCTCTGGATGGTGGTGGCAACAGAGATGGCAGCGCGGCTGAAGTCTTAGGAGGGCGGCCTGAGCGGTAGGAGGGTAGTCTGAGCAGTAGGAGGGGGGCTGGAGCAGTAAGATGGCGGCCGGAGCGCTAGGCGGGAGGCTGGAGCAGTAAGATGGCAGCCGGAGCGGTAGGGGGGTGGCTGGCAGCCGGAGCGGTAGGGGGGTGGCTGGCAGCTGGAGCTGCTCTTGACCAGCTAGAGGTCTAGGAGAAGGTGGGGACCATGCCCAATGCTGGCGGCTGGAGCCTTGGCCCTGGCGGCTCGCCTGGCTGCGGTTGGTGGTGGCGACGGAGACTGCATCTCTGTCAAGTAGTAGAAAGGTGGCAGGGTTTTTCTGGCATTGTCTGCCCAGCTACTCCAAGCCAGGCTGATGAAGGAGGAGTCCCCTGTGGTGACTGGAGGTTGGAGCCTGAAGATGGCACAGCTCTGTGATTCATCTCCTGCTGTTGTGGCGGCCACGGTGATGGAGACGGCAGCTCAACAGGAGCGGTAGGAGGGTACCCGTGGAGGCCAAGTGATTAATTAGCTCTCAGGACTGCTGTGTCCAGAGTTGATTCCTTCTGGTGGGTTCGTGGTGTTGCTGACTTGAAGAATGAAGCCGCCGACCTTCACGAGCGCTGATTGGTGTGTTTTACAGAGCATGGATTGGTGCGTTTTACAGAGCGCTGATTGGTACATTTCACAGAACTCGTGAGACAGTCGCAGGTGGCATGATTTGATTTGTGTGAAGGCAATGAAATGATACACAGATACACCGAAGCCTCCCAAAAGAATCCTGGTTCCAAGATTCAAGAAGATGGATTAATGTTTTTCCATTAATTGTTGGAATTTATGCCATTTTTTTACTATGTGCCATCAATTTTAAAGCACTTCTGAAAAGAGATAACAATCTACAATAGCTGGCATTTTAAATTCATAAAAATATAGTATTTTCTTCTATTTTTATACATTTATGATGCATTATTTCTTATTTCCCAGGAATTTTACTACCTTTGTTTTGAATGATTAAAAAGGAAACATAGCACCTTTTTTCAACAC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG052380]] | + | [[Category:Intergenic]][[Category:NONHSAG052380]][[Category:Transcripts]] |
Latest revision as of 07:18, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT131476 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1168 nt |
| Genomic location |
chr9+:46763791..46833318 |
| Exon number |
5 |
| Exons |
46763791..46764248,46765526..46765714,46829291..46829386,46829671..46829756,46832980..46833318 |
| Genome context |
|
| Sequence |
000001 CCAGTATCTC CTGCCGAGCT GCTCTGTTCC CGGCTTAGAG GACCAGGAGA AGGGGGAGCT GGAGGCTGGA GCCTGTAACA 000080
000081 CCATGGCTCG TCTCGCTCTG GATGGTGGTG GCAACAGAGA TGGCAGCGCG GCTGAAGTCT TAGGAGGGCG GCCTGAGCGG 000160 000161 TAGGAGGGTA GTCTGAGCAG TAGGAGGGGG GCTGGAGCAG TAAGATGGCG GCCGGAGCGC TAGGCGGGAG GCTGGAGCAG 000240 000241 TAAGATGGCA GCCGGAGCGG TAGGGGGGTG GCTGGCAGCC GGAGCGGTAG GGGGGTGGCT GGCAGCTGGA GCTGCTCTTG 000320 000321 ACCAGCTAGA GGTCTAGGAG AAGGTGGGGA CCATGCCCAA TGCTGGCGGC TGGAGCCTTG GCCCTGGCGG CTCGCCTGGC 000400 000401 TGCGGTTGGT GGTGGCGACG GAGACTGCAT CTCTGTCAAG TAGTAGAAAG GTGGCAGGGT TTTTCTGGCA TTGTCTGCCC 000480 000481 AGCTACTCCA AGCCAGGCTG ATGAAGGAGG AGTCCCCTGT GGTGACTGGA GGTTGGAGCC TGAAGATGGC ACAGCTCTGT 000560 000561 GATTCATCTC CTGCTGTTGT GGCGGCCACG GTGATGGAGA CGGCAGCTCA ACAGGAGCGG TAGGAGGGTA CCCGTGGAGG 000640 000641 CCAAGTGATT AATTAGCTCT CAGGACTGCT GTGTCCAGAG TTGATTCCTT CTGGTGGGTT CGTGGTGTTG CTGACTTGAA 000720 000721 GAATGAAGCC GCCGACCTTC ACGAGCGCTG ATTGGTGTGT TTTACAGAGC ATGGATTGGT GCGTTTTACA GAGCGCTGAT 000800 000801 TGGTACATTT CACAGAACTC GTGAGACAGT CGCAGGTGGC ATGATTTGAT TTGTGTGAAG GCAATGAAAT GATACACAGA 000880 000881 TACACCGAAG CCTCCCAAAA GAATCCTGGT TCCAAGATTC AAGAAGATGG ATTAATGTTT TTCCATTAAT TGTTGGAATT 000960 000961 TATGCCATTT TTTTACTATG TGCCATCAAT TTTAAAGCAC TTCTGAAAAG AGATAACAAT CTACAATAGC TGGCATTTTA 001040 001041 AATTCATAAA AATATAGTAT TTTCTTCTAT TTTTATACAT TTATGATGCA TTATTTCTTA TTTCCCAGGA ATTTTACTAC 001120 001121 CTTTGTTTTG AATGATTAAA AAGGAAACAT AGCACCTTTT TTCAACAC |
Predicted Small Protein
| Name | NONHSAT131476_smProtein_500:622 |
| Length | 41 |
| Molecular weight | 4237.8089 |
| Aromaticity | 0.025 |
| Instability index | 89.4275 |
| Isoelectric point | 4.58428955078 |
| Runs | 7 |
| Runs residual | 0.00302419354839 |
| Runs probability | 0.024415171474 |
| Amino acid sequence | MKEESPVVTGGWSLKMAQLCDSSPAVVAATVMETAAQQER |
| Secondary structure | LLLLLLEELLLHHHHHHHHLLLLHHHHHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
