Difference between revisions of "NONHSAT131715"
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sequence = <dnaseq>GGCCCCGGCCAGGCCGGGAGTGGCGTGCTGGGCGTGCGCGGCTGCGGTACGGCGTGTTGGTCCCAGCGGTTCAGCTGAGGTAGGGACGTGCCGTAGGCCGGAATGTTACCGGCTGTTGGATCTGTGGATGAGGAAGAGGATCCTGCGGAGGAGGATTGTCCTGAATTGGTTCCCATTGAGACGACGCAAAGCGAGGAGGAGGAAAAGTCTGGCCTCGGCGCCAAGATCCCAGTCACAATTATCACCGGGTATTTAGTTATTCAAAGGCTGCTCTACTGAGAAGATGAACAAATTTCTTGTCCAAAACAATGTATTTCAAACGTGCCCCTCGGGCCTTTCCCGTGTTGCTCACTGGTGCTGGGAAGACAACACTTCTGAACTATATTTTGACAGAGCAACATAGTAAAAGAGTAGCGGTCATTTTAAATGAATCTGGGGAAGGAAGTGCGCTGGAGAAATCCTTAGCTGTCAGCCAAGGTGGAGAGCTCTATGAAGAGTGGCTGGAACTTAGAAACGGTTGCCTCTGCTGTTCAGTGAAGTGAGGAATGTGTTTACTGTGTACATGGTTTACTAGAAATGTTTATTGATTATATTTCCAGCTTTAATTTTCTTGAGTAATTTAACTGAATTTACACAGTTTGCTTCATTGTATTTTCAAACAAATAGAAAATAAACTTATTAGGAAGCATTTTCTTAAAGTGTTTTTGCTGTCTTTTCTATCTGCTCTAATGTTTTGGTCCTTTTATTGAGTTTTTATTGCTTTTGATGTCAGGGCTTATTTAATCTCTAGTGCATGAAAGTCTCATATGTAAAAAATGATTATTCTGAATTTAATCTGTCATTGGTCATACTTCTAAGTGTTCAACCTTATAAAAAATAAATGACTATCAAAAA</dnaseq>| | sequence = <dnaseq>GGCCCCGGCCAGGCCGGGAGTGGCGTGCTGGGCGTGCGCGGCTGCGGTACGGCGTGTTGGTCCCAGCGGTTCAGCTGAGGTAGGGACGTGCCGTAGGCCGGAATGTTACCGGCTGTTGGATCTGTGGATGAGGAAGAGGATCCTGCGGAGGAGGATTGTCCTGAATTGGTTCCCATTGAGACGACGCAAAGCGAGGAGGAGGAAAAGTCTGGCCTCGGCGCCAAGATCCCAGTCACAATTATCACCGGGTATTTAGTTATTCAAAGGCTGCTCTACTGAGAAGATGAACAAATTTCTTGTCCAAAACAATGTATTTCAAACGTGCCCCTCGGGCCTTTCCCGTGTTGCTCACTGGTGCTGGGAAGACAACACTTCTGAACTATATTTTGACAGAGCAACATAGTAAAAGAGTAGCGGTCATTTTAAATGAATCTGGGGAAGGAAGTGCGCTGGAGAAATCCTTAGCTGTCAGCCAAGGTGGAGAGCTCTATGAAGAGTGGCTGGAACTTAGAAACGGTTGCCTCTGCTGTTCAGTGAAGTGAGGAATGTGTTTACTGTGTACATGGTTTACTAGAAATGTTTATTGATTATATTTCCAGCTTTAATTTTCTTGAGTAATTTAACTGAATTTACACAGTTTGCTTCATTGTATTTTCAAACAAATAGAAAATAAACTTATTAGGAAGCATTTTCTTAAAGTGTTTTTGCTGTCTTTTCTATCTGCTCTAATGTTTTGGTCCTTTTATTGAGTTTTTATTGCTTTTGATGTCAGGGCTTATTTAATCTCTAGTGCATGAAAGTCTCATATGTAAAAAATGATTATTCTGAATTTAATCTGTCATTGGTCATACTTCTAAGTGTTCAACCTTATAAAAAATAAATGACTATCAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG052478]] | + | [[Category:Sense]][[Category:NONHSAG052478]][[Category:Transcripts]] |
Latest revision as of 07:19, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT131715 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
894 nt |
| Genomic location |
chr9-:70484019..70490170 |
| Exon number |
4 |
| Exons |
70484019..70484471,70486793..70486879,70488820..70488917,70489915..70490170 |
| Genome context |
|
| Sequence |
000001 GGCCCCGGCC AGGCCGGGAG TGGCGTGCTG GGCGTGCGCG GCTGCGGTAC GGCGTGTTGG TCCCAGCGGT TCAGCTGAGG 000080
000081 TAGGGACGTG CCGTAGGCCG GAATGTTACC GGCTGTTGGA TCTGTGGATG AGGAAGAGGA TCCTGCGGAG GAGGATTGTC 000160 000161 CTGAATTGGT TCCCATTGAG ACGACGCAAA GCGAGGAGGA GGAAAAGTCT GGCCTCGGCG CCAAGATCCC AGTCACAATT 000240 000241 ATCACCGGGT ATTTAGTTAT TCAAAGGCTG CTCTACTGAG AAGATGAACA AATTTCTTGT CCAAAACAAT GTATTTCAAA 000320 000321 CGTGCCCCTC GGGCCTTTCC CGTGTTGCTC ACTGGTGCTG GGAAGACAAC ACTTCTGAAC TATATTTTGA CAGAGCAACA 000400 000401 TAGTAAAAGA GTAGCGGTCA TTTTAAATGA ATCTGGGGAA GGAAGTGCGC TGGAGAAATC CTTAGCTGTC AGCCAAGGTG 000480 000481 GAGAGCTCTA TGAAGAGTGG CTGGAACTTA GAAACGGTTG CCTCTGCTGT TCAGTGAAGT GAGGAATGTG TTTACTGTGT 000560 000561 ACATGGTTTA CTAGAAATGT TTATTGATTA TATTTCCAGC TTTAATTTTC TTGAGTAATT TAACTGAATT TACACAGTTT 000640 000641 GCTTCATTGT ATTTTCAAAC AAATAGAAAA TAAACTTATT AGGAAGCATT TTCTTAAAGT GTTTTTGCTG TCTTTTCTAT 000720 000721 CTGCTCTAAT GTTTTGGTCC TTTTATTGAG TTTTTATTGC TTTTGATGTC AGGGCTTATT TAATCTCTAG TGCATGAAAG 000800 000801 TCTCATATGT AAAAAATGAT TATTCTGAAT TTAATCTGTC ATTGGTCATA CTTCTAAGTG TTCAACCTTA TAAAAAATAA 000880 000881 ATGACTATCA AAAA |
Predicted Small Protein
| Name | NONHSAT131715_smProtein_308:541 |
| Length | 78 |
| Molecular weight | 8489.7366 |
| Aromaticity | 0.0779220779221 |
| Instability index | 44.5142857143 |
| Isoelectric point | 7.70806884766 |
| Runs | 13 |
| Runs residual | 0.0327498588368 |
| Runs probability | 0.0431223078282 |
| Amino acid sequence | MYFKRAPRAFPVLLTGAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGEL YEEWLELRNGCLCCSVK |
| Secondary structure | LLLLLLLLLLLEEELLLLHHHHHHHHHHHHHLLLEEEEELLLLLLHHHHHHHHHHLLLHH HHHHHHHHLLEEEEEEL |
| PRMN | - |
| PiMo | - |
