Difference between revisions of "NONHSAT132921"

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Revision as of 22:29, 25 July 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT132921

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

999 nt

Genomic location

chr9+:90791305..90794625

Exon number

2

Exons

90791305..90791378,90793701..90794625

Genome context

Sequence
000001 CGgatgctgc ggctactggt ccaggaagca cattttgaga accactcagc tagaagatta ttgcattcat ccagGTTCCT 000080
000081 GCTGAAGTCT GAGGGGAAAA GGGGATTCTG GAAGGCGGAG AAATGGATGG ATCCTGTGGA GAGGCCAGAC AGCTTCCGAG 000160
000161 CAGCTGAGAA AGAAGGAAGT CAGCCAAGGT CTGAAAGAAG AGAGATAGAT GCTGGAGAGC ATTTAAATGA AAAGAATTTA 000240
000241 ACCAGAAGTA TCGGCAGAAG TAAAAGAAAA GCCATGTTGG GGGAACCTAA AGATTAGCCA CAAAGGTTAA GGGAAAGGAG 000320
000321 GGAGGAGAGG AGACGTTACT GCAGCCTGTG AAGGCCAGAG CAAGAGGCGT GGCCGTGGAA AGTGCAGGAA GTATGGCTAT 000400
000401 GGAGAGTGCT GGGGTGTGGC TGTGGTGGGT GCAGGAAGCG TGGCTGTGGA GCGGGTGTGG TTATGGACGG AGTGTGGCTG 000480
000481 TGGAGGGGGT GTGACTGTGG AGGGTGCTGA GTGTGGCTGT GGTGGGTGCT GGGGGTGTGG CTGTGGTAGG GGAGGTGTGG 000560
000561 CTATTGGATA GTCACAGCTG TGGTGGGTGC AGGGGGCAAG GCTGTGGTGT AGGAAGTGTA GTGTGGCTAT TGAATGGGGT 000640
000641 GTATAGCAGT GGTGAATACA GGAGGCATGG CCTTGGTGGG TACAGGAGGC ATGGCTATAA CACAGGAGGC ATGGCCTTGG 000720
000721 TGGGTGCAGG AAGCATAGCT GTGATGCAAG AAGCATGGCC TTGGTGAGTG CTGGAGtatg ttctctaaag acactgtgaa 000800
000801 cactattagc ccatactgaa ccactgctcc tggagaaata cagggttagc ttccacgcct ctgatcacta catttttgtc 000880
000881 atccaaccaa tacatatttt tgttttatgt gtttttatct acagacacct tgtttaatat acgttTCTTA CCAATAGTTA 000960
000961 ACTGTATGTA TTATTCTTTA TAATAAAACT CAAGCTGGG
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Predicted Small Protein

Name NONHSAT132921_smProtein_392:493
Length 34
Molecular weight 3702.2
Aromaticity 0.181818181818
Instability index 52.5363636364
Isoelectric point 4.25201416016
Runs 7
Runs residual 0.0279973649539
Runs probability 0.0262952027658
Amino acid sequence MAMESAGVWLWWVQEAWLWSGCGYGRSVAVEGV
Secondary structure LLLHHHLHHHHHHHHHHHHHLLLLLLEEEEEEL
PRMN -
PiMo -