Difference between revisions of "NONHSAT144894"

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sequence = <dnaseq>GAAGGCTGGAGCCAACAGGAATTGCTTCCATGGTCATGGAATTTTACTGTTTACAGAGACCTCCCTGGGAGGGCTAACTGGGTCATACCTGCTTTGGGACTTTGGGGCTCAGAGGCAATGGCAACATCACATTTGTCCTTGTGAGATGAGTTTGAGCGGTGGCTGACACCTGCCCTGTACCAGGtactaaatgtggttctggggatactatcaccagtgagctgccctggaaagctcattgtcggcagaggaaacaggagaaaacacgcaacaatacaGTATTCCAAACAGCAGTGGGTCACTGTCTTTACTTTAGGATTCATAAAGCCTGTTAATGAATGGGTGTGCTGGGGGCACTGTCATGTTCTTCAGCATGCTGCCTGGGCGACGAGGAGGCCCTTCCTAGGGTCTGACCTGGCTTCCCTTCCCAGGTGGGTGCAGGTGGCATGTCCACGTCTCTCCATTGACTGGGGCACAGCCTTCCCCAAGCCGCTGCTGACACCCTATGAGGTAACACCAAGCTCTGGGAGAGAGTGGGCTTTGGACGTGGTTCTCAAAGGTGAGGTCTGGAGTGGAGTGGGGTGGGTGGGCAGCACTTCgttatgttcgtagattccggagtctgtctcgatttctccagcggagtcacttcctagctgtgtagccttaggcaaggccctgaaccacacagttcccttctgtggcaggggacagtgtgcccttcacaggccgtcgtgaggactgaattcagtaatccaGGGGCAGAAAAACACTGGCAGATGTTATTGTCCCTCCCTCCCCTCCCCTAGGCGGCCGTGGCTCTGAGGGACATTTCCTGGCAGCAGCCCTACCCGATGGACTTCTACGCTGGCAGCTCCTTGGGGCCCTGGACGGTGAACCACGGCCAGGACCGCCGTCCCCAcgccccgggccggcccgcgcgggggAAGGTGCAGGAGGGGTCCGCGCGTCCCCCTTCGGCCGTGGCTTGCGAGGACTGCAGCTGCAGGGACGAGAAGGTGGCGCCGCTGGCTCCTTGACGCGCTCCCGGGCCTCAGGTATCAGCCCCCGCTCTGGGTGCGCCCCGCCTTTTGCCGTTGTCATGGGAACGCCTTGGCGCTCCGAGGCCCGCCCTCGGGGCGGTGCTGACGTTCGGTTCCGCCCCGTGCATTGTGCTTCCGCTCGGGGAAAGACCGCTTCCGGTGCTTCCGTCGCTCCTTGCCGGGCATAATGGCCGCGCAGCGACCCCTGCGGGTCCTGTGCCTGGCGGGCTTCCGGCAGAGCGAGCGGGGCTTCCGTGAGAAGACCGGGGCGCTGAGGAAGGCGCTGCGGGGTCGCGCCGAGCTCGTGTGCCTCAGCGGCCCGCACCCGGTCCCCGACCCCCCGGGCCCCGAGGGCGCCAGATCAGACTTCGGTGAGACAAGCCCCGCTCCGGAAACGCACTCAGTTTCCTCCATCTTGTTTCGTCCCCCTCGACACCCTTCAGCATCCCCCACCCTGCGTCCACCCGCATTCCTCCCACCCAGTCCACACCCTTCATTTCTCGCGACCCATACCCTCTTTGCTCAAACTGCAGCCTGTCCTCCCAGGCTTCCGCCTTCACCGTCTTCCTCCGCTGTCTCCTGTTCAGGCCAATCCACTCATTTCCCCCCTCTCATTTCCCCCAGACTTTTGCCTCGATTCCCTTTTTCTCTCTGTCATCTCGAACCCTCCTGCCCTTTCTCATTTCTTTCCTTCCTGGAGCCTCCCATGCCCTAATCCCATCCTTTTTCCTCATATCGCTGTAGGGTCCTGCCCTCCGGAGGAGCAGCCTCGAGGCTGGTGGTTTTCAGAGCAGGAGGCCGACGTTTTCTCCGCATTGGAAGAGCCCGCCGTCTGCAGGGGCCTGGAGGAATCACTGGGGATGGTGGCACAGGCACTGAACAGGCTGGGGCCTTTTGACGGCCTTCTTGGTTTCAGCCAAGGGGCTGCGCTAGCAGCCCTTGTGTGTGCCCTGGGCCAGGCAGGCGATCCCCGCTTCCCCTTGCCACGGTTTATCCTCTTGGTGTCTGGTTTCTGTCCCCGGGGCATTGGGTTCAAGGAATCCATCCTGCAAAGGCCCTTGTCATTGCCTTCGCTCCATGTTTTTGGGGACACTGACAAAGTCATCCCCTCTCAGGAGAGTGTGCAACTGGCCAGCCAATTTCCCGGAGCCATCACCCTCACCCACTCTGGTGGCCACTTCATTCCAGCAGCTGCACCCCAGCGTCAGGCCTACCTCAAGTTCTTGGACCAGTTTGCAGAGTGAAAGATCAAGAAATGTCTCTGCTCCTACATCCAGCTCCTCTAGGGGCAGCCTCCGTCATCCATGCCCTCCCAGGACCCTCCACTCACTGCTGTGAGTGCGCCTCACCAGAACCAGTTAAGAGACAACTATCAATTCTTGAGACCCAAATTATAAGGGCCCTGCCCTGTACTGAAGAAAAGGGGAGCACAAGGCCTTAATGGACATTGACTTGTGAAAACGCAAACATGAATATGGTTGGAGAGCCCTGGATTAGGAGGGTGACATGGGGAAGGCAGAGGCTGGCACCATGGTGACTGCCACATAATAAAGTGGTGATTTGG</dnaseq>|
 
sequence = <dnaseq>GAAGGCTGGAGCCAACAGGAATTGCTTCCATGGTCATGGAATTTTACTGTTTACAGAGACCTCCCTGGGAGGGCTAACTGGGTCATACCTGCTTTGGGACTTTGGGGCTCAGAGGCAATGGCAACATCACATTTGTCCTTGTGAGATGAGTTTGAGCGGTGGCTGACACCTGCCCTGTACCAGGtactaaatgtggttctggggatactatcaccagtgagctgccctggaaagctcattgtcggcagaggaaacaggagaaaacacgcaacaatacaGTATTCCAAACAGCAGTGGGTCACTGTCTTTACTTTAGGATTCATAAAGCCTGTTAATGAATGGGTGTGCTGGGGGCACTGTCATGTTCTTCAGCATGCTGCCTGGGCGACGAGGAGGCCCTTCCTAGGGTCTGACCTGGCTTCCCTTCCCAGGTGGGTGCAGGTGGCATGTCCACGTCTCTCCATTGACTGGGGCACAGCCTTCCCCAAGCCGCTGCTGACACCCTATGAGGTAACACCAAGCTCTGGGAGAGAGTGGGCTTTGGACGTGGTTCTCAAAGGTGAGGTCTGGAGTGGAGTGGGGTGGGTGGGCAGCACTTCgttatgttcgtagattccggagtctgtctcgatttctccagcggagtcacttcctagctgtgtagccttaggcaaggccctgaaccacacagttcccttctgtggcaggggacagtgtgcccttcacaggccgtcgtgaggactgaattcagtaatccaGGGGCAGAAAAACACTGGCAGATGTTATTGTCCCTCCCTCCCCTCCCCTAGGCGGCCGTGGCTCTGAGGGACATTTCCTGGCAGCAGCCCTACCCGATGGACTTCTACGCTGGCAGCTCCTTGGGGCCCTGGACGGTGAACCACGGCCAGGACCGCCGTCCCCAcgccccgggccggcccgcgcgggggAAGGTGCAGGAGGGGTCCGCGCGTCCCCCTTCGGCCGTGGCTTGCGAGGACTGCAGCTGCAGGGACGAGAAGGTGGCGCCGCTGGCTCCTTGACGCGCTCCCGGGCCTCAGGTATCAGCCCCCGCTCTGGGTGCGCCCCGCCTTTTGCCGTTGTCATGGGAACGCCTTGGCGCTCCGAGGCCCGCCCTCGGGGCGGTGCTGACGTTCGGTTCCGCCCCGTGCATTGTGCTTCCGCTCGGGGAAAGACCGCTTCCGGTGCTTCCGTCGCTCCTTGCCGGGCATAATGGCCGCGCAGCGACCCCTGCGGGTCCTGTGCCTGGCGGGCTTCCGGCAGAGCGAGCGGGGCTTCCGTGAGAAGACCGGGGCGCTGAGGAAGGCGCTGCGGGGTCGCGCCGAGCTCGTGTGCCTCAGCGGCCCGCACCCGGTCCCCGACCCCCCGGGCCCCGAGGGCGCCAGATCAGACTTCGGTGAGACAAGCCCCGCTCCGGAAACGCACTCAGTTTCCTCCATCTTGTTTCGTCCCCCTCGACACCCTTCAGCATCCCCCACCCTGCGTCCACCCGCATTCCTCCCACCCAGTCCACACCCTTCATTTCTCGCGACCCATACCCTCTTTGCTCAAACTGCAGCCTGTCCTCCCAGGCTTCCGCCTTCACCGTCTTCCTCCGCTGTCTCCTGTTCAGGCCAATCCACTCATTTCCCCCCTCTCATTTCCCCCAGACTTTTGCCTCGATTCCCTTTTTCTCTCTGTCATCTCGAACCCTCCTGCCCTTTCTCATTTCTTTCCTTCCTGGAGCCTCCCATGCCCTAATCCCATCCTTTTTCCTCATATCGCTGTAGGGTCCTGCCCTCCGGAGGAGCAGCCTCGAGGCTGGTGGTTTTCAGAGCAGGAGGCCGACGTTTTCTCCGCATTGGAAGAGCCCGCCGTCTGCAGGGGCCTGGAGGAATCACTGGGGATGGTGGCACAGGCACTGAACAGGCTGGGGCCTTTTGACGGCCTTCTTGGTTTCAGCCAAGGGGCTGCGCTAGCAGCCCTTGTGTGTGCCCTGGGCCAGGCAGGCGATCCCCGCTTCCCCTTGCCACGGTTTATCCTCTTGGTGTCTGGTTTCTGTCCCCGGGGCATTGGGTTCAAGGAATCCATCCTGCAAAGGCCCTTGTCATTGCCTTCGCTCCATGTTTTTGGGGACACTGACAAAGTCATCCCCTCTCAGGAGAGTGTGCAACTGGCCAGCCAATTTCCCGGAGCCATCACCCTCACCCACTCTGGTGGCCACTTCATTCCAGCAGCTGCACCCCAGCGTCAGGCCTACCTCAAGTTCTTGGACCAGTTTGCAGAGTGAAAGATCAAGAAATGTCTCTGCTCCTACATCCAGCTCCTCTAGGGGCAGCCTCCGTCATCCATGCCCTCCCAGGACCCTCCACTCACTGCTGTGAGTGCGCCTCACCAGAACCAGTTAAGAGACAACTATCAATTCTTGAGACCCAAATTATAAGGGCCCTGCCCTGTACTGAAGAAAAGGGGAGCACAAGGCCTTAATGGACATTGACTTGTGAAAACGCAAACATGAATATGGTTGGAGAGCCCTGGATTAGGAGGGTGACATGGGGAAGGCAGAGGCTGGCACCATGGTGACTGCCACATAATAAAGTGGTGATTTGG</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG020484]]
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[[Category:Sense]][[Category:NONHSAG020484]][[Category:Transcripts]]

Latest revision as of 03:15, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT144894

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2607 nt

Genomic location

chr17+:1943966..1946718

Exon number

2

Exons

1943966..1944915,1945062..1946718

Genome context

Sequence
000001 GAAGGCTGGA GCCAACAGGA ATTGCTTCCA TGGTCATGGA ATTTTACTGT TTACAGAGAC CTCCCTGGGA GGGCTAACTG 000080
000081 GGTCATACCT GCTTTGGGAC TTTGGGGCTC AGAGGCAATG GCAACATCAC ATTTGTCCTT GTGAGATGAG TTTGAGCGGT 000160
000161 GGCTGACACC TGCCCTGTAC CAGGtactaa atgtggttct ggggatacta tcaccagtga gctgccctgg aaagctcatt 000240
000241 gtcggcagag gaaacaggag aaaacacgca acaatacaGT ATTCCAAACA GCAGTGGGTC ACTGTCTTTA CTTTAGGATT 000320
000321 CATAAAGCCT GTTAATGAAT GGGTGTGCTG GGGGCACTGT CATGTTCTTC AGCATGCTGC CTGGGCGACG AGGAGGCCCT 000400
000401 TCCTAGGGTC TGACCTGGCT TCCCTTCCCA GGTGGGTGCA GGTGGCATGT CCACGTCTCT CCATTGACTG GGGCACAGCC 000480
000481 TTCCCCAAGC CGCTGCTGAC ACCCTATGAG GTAACACCAA GCTCTGGGAG AGAGTGGGCT TTGGACGTGG TTCTCAAAGG 000560
000561 TGAGGTCTGG AGTGGAGTGG GGTGGGTGGG CAGCACTTCg ttatgttcgt agattccgga gtctgtctcg atttctccag 000640
000641 cggagtcact tcctagctgt gtagccttag gcaaggccct gaaccacaca gttcccttct gtggcagggg acagtgtgcc 000720
000721 cttcacaggc cgtcgtgagg actgaattca gtaatccaGG GGCAGAAAAA CACTGGCAGA TGTTATTGTC CCTCCCTCCC 000800
000801 CTCCCCTAGG CGGCCGTGGC TCTGAGGGAC ATTTCCTGGC AGCAGCCCTA CCCGATGGAC TTCTACGCTG GCAGCTCCTT 000880
000881 GGGGCCCTGG ACGGTGAACC ACGGCCAGGA CCGCCGTCCC CAcgccccgg gccggcccgc gcgggggAAG GTGCAGGAGG 000960
000961 GGTCCGCGCG TCCCCCTTCG GCCGTGGCTT GCGAGGACTG CAGCTGCAGG GACGAGAAGG TGGCGCCGCT GGCTCCTTGA 001040
001041 CGCGCTCCCG GGCCTCAGGT ATCAGCCCCC GCTCTGGGTG CGCCCCGCCT TTTGCCGTTG TCATGGGAAC GCCTTGGCGC 001120
001121 TCCGAGGCCC GCCCTCGGGG CGGTGCTGAC GTTCGGTTCC GCCCCGTGCA TTGTGCTTCC GCTCGGGGAA AGACCGCTTC 001200
001201 CGGTGCTTCC GTCGCTCCTT GCCGGGCATA ATGGCCGCGC AGCGACCCCT GCGGGTCCTG TGCCTGGCGG GCTTCCGGCA 001280
001281 GAGCGAGCGG GGCTTCCGTG AGAAGACCGG GGCGCTGAGG AAGGCGCTGC GGGGTCGCGC CGAGCTCGTG TGCCTCAGCG 001360
001361 GCCCGCACCC GGTCCCCGAC CCCCCGGGCC CCGAGGGCGC CAGATCAGAC TTCGGTGAGA CAAGCCCCGC TCCGGAAACG 001440
001441 CACTCAGTTT CCTCCATCTT GTTTCGTCCC CCTCGACACC CTTCAGCATC CCCCACCCTG CGTCCACCCG CATTCCTCCC 001520
001521 ACCCAGTCCA CACCCTTCAT TTCTCGCGAC CCATACCCTC TTTGCTCAAA CTGCAGCCTG TCCTCCCAGG CTTCCGCCTT 001600
001601 CACCGTCTTC CTCCGCTGTC TCCTGTTCAG GCCAATCCAC TCATTTCCCC CCTCTCATTT CCCCCAGACT TTTGCCTCGA 001680
001681 TTCCCTTTTT CTCTCTGTCA TCTCGAACCC TCCTGCCCTT TCTCATTTCT TTCCTTCCTG GAGCCTCCCA TGCCCTAATC 001760
001761 CCATCCTTTT TCCTCATATC GCTGTAGGGT CCTGCCCTCC GGAGGAGCAG CCTCGAGGCT GGTGGTTTTC AGAGCAGGAG 001840
001841 GCCGACGTTT TCTCCGCATT GGAAGAGCCC GCCGTCTGCA GGGGCCTGGA GGAATCACTG GGGATGGTGG CACAGGCACT 001920
001921 GAACAGGCTG GGGCCTTTTG ACGGCCTTCT TGGTTTCAGC CAAGGGGCTG CGCTAGCAGC CCTTGTGTGT GCCCTGGGCC 002000
002001 AGGCAGGCGA TCCCCGCTTC CCCTTGCCAC GGTTTATCCT CTTGGTGTCT GGTTTCTGTC CCCGGGGCAT TGGGTTCAAG 002080
002081 GAATCCATCC TGCAAAGGCC CTTGTCATTG CCTTCGCTCC ATGTTTTTGG GGACACTGAC AAAGTCATCC CCTCTCAGGA 002160
002161 GAGTGTGCAA CTGGCCAGCC AATTTCCCGG AGCCATCACC CTCACCCACT CTGGTGGCCA CTTCATTCCA GCAGCTGCAC 002240
002241 CCCAGCGTCA GGCCTACCTC AAGTTCTTGG ACCAGTTTGC AGAGTGAAAG ATCAAGAAAT GTCTCTGCTC CTACATCCAG 002320
002321 CTCCTCTAGG GGCAGCCTCC GTCATCCATG CCCTCCCAGG ACCCTCCACT CACTGCTGTG AGTGCGCCTC ACCAGAACCA 002400
002401 GTTAAGAGAC AACTATCAAT TCTTGAGACC CAAATTATAA GGGCCCTGCC CTGTACTGAA GAAAAGGGGA GCACAAGGCC 002480
002481 TTAATGGACA TTGACTTGTG AAAACGCAAA CATGAATATG GTTGGAGAGC CCTGGATTAG GAGGGTGACA TGGGGAAGGC 002560
002561 AGAGGCTGGC ACCATGGTGA CTGCCACATA ATAAAGTGGT GATTTGG
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Predicted Small Protein

Name NONHSAT144894_smProtein_2120:2380
Length 87
Molecular weight 9427.5561
Aromaticity 0.0581395348837
Instability index 91.7476744186
Isoelectric point 11.7826538086
Runs 9
Runs residual 0.0349704963554
Runs probability 0.0246815442894
Amino acid sequence MFLGTLTKSSPLRRVCNWPANFPEPSPSPTLVATSFQQLHPSVRPTSSSWTSLQSERSRN
VSAPTSSSSRGSLRHPCPPRTLHSLL
Secondary structure LEEEEELLLLLLEEELLLLLLLLLLLLLLLEEEELHHHLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -