Difference between revisions of "SHANK2-AS3"
Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== SHANK2-AS3 ===Approved Name=== SHANK2 antisense RNA 3 ===Previous Symbols=== C11orf76 ===Synonyms=== _ ===Chromosome=== 11q13.4...") |
Chunlei Yu (talk | contribs) (→Annotated Information) |
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| Line 11: | Line 11: | ||
11q13.4 | 11q13.4 | ||
===RefSeq ID=== | ===RefSeq ID=== | ||
| − | + | NR_073536 | |
===OMIM ID=== | ===OMIM ID=== | ||
_ | _ | ||
| Line 17: | Line 17: | ||
ENSG00000171671 | ENSG00000171671 | ||
===pubmed IDs=== | ===pubmed IDs=== | ||
| − | + | 12477932 | |
===Sequence=== | ===Sequence=== | ||
>gi|430768626|ref|NR_073536.1| Homo sapiens SHANK2 antisense RNA 3 (SHANK2-AS3), long non-coding RNA | >gi|430768626|ref|NR_073536.1| Homo sapiens SHANK2 antisense RNA 3 (SHANK2-AS3), long non-coding RNA | ||
<dnaseq>TTTTGGATCCTTTGGGATTCCCCCACGGGAGTAGTCAACTGGGCAGCAGGACACAGTCTAGAGTCTAGTAAACTGGAGCTGATCTAAGCACCAGAACCTGAGCTGATGGCACAACTGCCCAGTGCCCAGATGCCGGCTCCCCGAACACAGCCCGACCTCATCCTGGTTCATCCAGTGCTGGCCCTGTCTGGACGAGCCCCAAGCATCCTCTGCTCGGTGCCCTGGGACGCCTGTGAACTCCTGGCCACGGCTATGTGGTGGAAGACACGGATTCTGTGGGGGGTTTTCCTTATCTCTAGGACTCGCCCACCTGCTCCCATGCAAATCCTCATTTTAACTCTGGATCCCAGTGAAGGAGAGGTGTGTTGTAAGAAGAGGAAACCTGGACAGACAGGAAGAAACCGAGTGAGGATGACGACAGCCACCTGCAAGCCAGGAGGAGAGGCCTCAGGAGAAACCAGCCCTGGGACACCCTAATCACAGGCGTCCGCCCCCACAACGGTGAGAGAATGTTTCTGATAAAACCACCCAGTTTTTGATACTTTCTTATGGCAGCCCCAGCAAACAAAAACTGGCTCCATGGCCTCCCCTGTCCTGGCCCCTCAGTCTCTACGACCTGGGCACCTTGCAAGCACAAGAAAGGGACCCTCCAGTTCGGGGTGCCCACACACCTTGCTTTCTTCCTTGAGCTCTGGTCACCAAGGAGGCAAAGGGGAGAGAGGCTTCCAAGGGGCCCATCATTTGGAAAGGGAAAACCAGCTTCTGTTGCCGTGGCAACTCCACTGGGATGCTCTGCTATTTGCACATTTTGAAATTGGAGGTGGGTAGTGAGAAGGGAAAAAGGAAAGAAAAATTGAGGGAGATGAGAGTATCCAGGGCAAAAGAAAGGAGAGAAAAGCAAATGAAGTTTAGGAAAAATCCAGCTTCGGACAGGTGACCCTGACAGTGCTTAATGACCTCAGATGAGTCCCAGGGCCGCGGGGACTTCCCCATTAAGTCATGGTGGCTCCAGCCAATGTCAGCCCAGGTCCCCCACTGTCAGAGAGGAAACAGAGGCTCGAAGATGAGAAGTGCCCTGCACAAGGTCACCTTGTGACTTGGAGGATTCTCCAGGTAAAAGCAGCCGTATTGGGGGAAGGCCTCTATTCTTGTAATGAACCAAACGTTTGTGCCAACCCCCCAAATTCATATGTTGAAGTCCTAACTCCCAACGTGATGGTTTTATGAGGTGGGGTCTTTGGGAGGTAAGCAAGTCATAAGTGTAGAACCTTCATAAATAGGATTAATGTCCTTATAAAAGGGACCCCCAGGACCTGGATATGGTGGTGTGAACCTGCAATCCCAGTGCTTTGGGAGGCTGAGGTGGGAGGATCCCTTGAGGCCACAAGTTTGAGACCAGCCTGGGCAACATGGCAAGACCCCATCTATACAGAAAATACAAAAATTAGCCAGGTATGGTGGTGCACACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTGGGAGGATGGCTTGAGCCCAGGAGTTTGAGGCTGCAGTGAGCCATGATTGCACCACTGCACTCCAGCCTGGAAAACGGAGTGAGAGTGTCTTAAAGAAAAAGGGGCCCTAGAGAGTTCTCTGGTACCCTGGTTTCAGACTTCTAGCCTCCAGAATGGTGAGAAATAAATATGTATTTTTTACGAAAAAAAAAAAAAAAAAAAA</dnaseq> | <dnaseq>TTTTGGATCCTTTGGGATTCCCCCACGGGAGTAGTCAACTGGGCAGCAGGACACAGTCTAGAGTCTAGTAAACTGGAGCTGATCTAAGCACCAGAACCTGAGCTGATGGCACAACTGCCCAGTGCCCAGATGCCGGCTCCCCGAACACAGCCCGACCTCATCCTGGTTCATCCAGTGCTGGCCCTGTCTGGACGAGCCCCAAGCATCCTCTGCTCGGTGCCCTGGGACGCCTGTGAACTCCTGGCCACGGCTATGTGGTGGAAGACACGGATTCTGTGGGGGGTTTTCCTTATCTCTAGGACTCGCCCACCTGCTCCCATGCAAATCCTCATTTTAACTCTGGATCCCAGTGAAGGAGAGGTGTGTTGTAAGAAGAGGAAACCTGGACAGACAGGAAGAAACCGAGTGAGGATGACGACAGCCACCTGCAAGCCAGGAGGAGAGGCCTCAGGAGAAACCAGCCCTGGGACACCCTAATCACAGGCGTCCGCCCCCACAACGGTGAGAGAATGTTTCTGATAAAACCACCCAGTTTTTGATACTTTCTTATGGCAGCCCCAGCAAACAAAAACTGGCTCCATGGCCTCCCCTGTCCTGGCCCCTCAGTCTCTACGACCTGGGCACCTTGCAAGCACAAGAAAGGGACCCTCCAGTTCGGGGTGCCCACACACCTTGCTTTCTTCCTTGAGCTCTGGTCACCAAGGAGGCAAAGGGGAGAGAGGCTTCCAAGGGGCCCATCATTTGGAAAGGGAAAACCAGCTTCTGTTGCCGTGGCAACTCCACTGGGATGCTCTGCTATTTGCACATTTTGAAATTGGAGGTGGGTAGTGAGAAGGGAAAAAGGAAAGAAAAATTGAGGGAGATGAGAGTATCCAGGGCAAAAGAAAGGAGAGAAAAGCAAATGAAGTTTAGGAAAAATCCAGCTTCGGACAGGTGACCCTGACAGTGCTTAATGACCTCAGATGAGTCCCAGGGCCGCGGGGACTTCCCCATTAAGTCATGGTGGCTCCAGCCAATGTCAGCCCAGGTCCCCCACTGTCAGAGAGGAAACAGAGGCTCGAAGATGAGAAGTGCCCTGCACAAGGTCACCTTGTGACTTGGAGGATTCTCCAGGTAAAAGCAGCCGTATTGGGGGAAGGCCTCTATTCTTGTAATGAACCAAACGTTTGTGCCAACCCCCCAAATTCATATGTTGAAGTCCTAACTCCCAACGTGATGGTTTTATGAGGTGGGGTCTTTGGGAGGTAAGCAAGTCATAAGTGTAGAACCTTCATAAATAGGATTAATGTCCTTATAAAAGGGACCCCCAGGACCTGGATATGGTGGTGTGAACCTGCAATCCCAGTGCTTTGGGAGGCTGAGGTGGGAGGATCCCTTGAGGCCACAAGTTTGAGACCAGCCTGGGCAACATGGCAAGACCCCATCTATACAGAAAATACAAAAATTAGCCAGGTATGGTGGTGCACACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTGGGAGGATGGCTTGAGCCCAGGAGTTTGAGGCTGCAGTGAGCCATGATTGCACCACTGCACTCCAGCCTGGAAAACGGAGTGAGAGTGTCTTAAAGAAAAAGGGGCCCTAGAGAGTTCTCTGGTACCCTGGTTTCAGACTTCTAGCCTCCAGAATGGTGAGAAATAAATATGTATTTTTTACGAAAAAAAAAAAAAAAAAAAA</dnaseq> | ||
Latest revision as of 08:23, 23 June 2016
Contents
Annotated Information
Approved Symbol
SHANK2-AS3
Approved Name
SHANK2 antisense RNA 3
Previous Symbols
C11orf76
Synonyms
_
Chromosome
11q13.4
RefSeq ID
NR_073536
OMIM ID
_
Ensembl ID
ENSG00000171671
pubmed IDs
12477932
Sequence
>gi|430768626|ref|NR_073536.1| Homo sapiens SHANK2 antisense RNA 3 (SHANK2-AS3), long non-coding RNA
000001 TTTTGGATCC TTTGGGATTC CCCCACGGGA GTAGTCAACT GGGCAGCAGG ACACAGTCTA GAGTCTAGTA AACTGGAGCT 000080
000081 GATCTAAGCA CCAGAACCTG AGCTGATGGC ACAACTGCCC AGTGCCCAGA TGCCGGCTCC CCGAACACAG CCCGACCTCA 000160
000161 TCCTGGTTCA TCCAGTGCTG GCCCTGTCTG GACGAGCCCC AAGCATCCTC TGCTCGGTGC CCTGGGACGC CTGTGAACTC 000240
000241 CTGGCCACGG CTATGTGGTG GAAGACACGG ATTCTGTGGG GGGTTTTCCT TATCTCTAGG ACTCGCCCAC CTGCTCCCAT 000320
000321 GCAAATCCTC ATTTTAACTC TGGATCCCAG TGAAGGAGAG GTGTGTTGTA AGAAGAGGAA ACCTGGACAG ACAGGAAGAA 000400
000401 ACCGAGTGAG GATGACGACA GCCACCTGCA AGCCAGGAGG AGAGGCCTCA GGAGAAACCA GCCCTGGGAC ACCCTAATCA 000480
000481 CAGGCGTCCG CCCCCACAAC GGTGAGAGAA TGTTTCTGAT AAAACCACCC AGTTTTTGAT ACTTTCTTAT GGCAGCCCCA 000560
000561 GCAAACAAAA ACTGGCTCCA TGGCCTCCCC TGTCCTGGCC CCTCAGTCTC TACGACCTGG GCACCTTGCA AGCACAAGAA 000640
000641 AGGGACCCTC CAGTTCGGGG TGCCCACACA CCTTGCTTTC TTCCTTGAGC TCTGGTCACC AAGGAGGCAA AGGGGAGAGA 000720
000721 GGCTTCCAAG GGGCCCATCA TTTGGAAAGG GAAAACCAGC TTCTGTTGCC GTGGCAACTC CACTGGGATG CTCTGCTATT 000800
000801 TGCACATTTT GAAATTGGAG GTGGGTAGTG AGAAGGGAAA AAGGAAAGAA AAATTGAGGG AGATGAGAGT ATCCAGGGCA 000880
000881 AAAGAAAGGA GAGAAAAGCA AATGAAGTTT AGGAAAAATC CAGCTTCGGA CAGGTGACCC TGACAGTGCT TAATGACCTC 000960
000961 AGATGAGTCC CAGGGCCGCG GGGACTTCCC CATTAAGTCA TGGTGGCTCC AGCCAATGTC AGCCCAGGTC CCCCACTGTC 001040
001041 AGAGAGGAAA CAGAGGCTCG AAGATGAGAA GTGCCCTGCA CAAGGTCACC TTGTGACTTG GAGGATTCTC CAGGTAAAAG 001120
001121 CAGCCGTATT GGGGGAAGGC CTCTATTCTT GTAATGAACC AAACGTTTGT GCCAACCCCC CAAATTCATA TGTTGAAGTC 001200
001201 CTAACTCCCA ACGTGATGGT TTTATGAGGT GGGGTCTTTG GGAGGTAAGC AAGTCATAAG TGTAGAACCT TCATAAATAG 001280
001281 GATTAATGTC CTTATAAAAG GGACCCCCAG GACCTGGATA TGGTGGTGTG AACCTGCAAT CCCAGTGCTT TGGGAGGCTG 001360
001361 AGGTGGGAGG ATCCCTTGAG GCCACAAGTT TGAGACCAGC CTGGGCAACA TGGCAAGACC CCATCTATAC AGAAAATACA 001440
001441 AAAATTAGCC AGGTATGGTG GTGCACACCT GTAGTCCCAG CTACTTGGGA GGCTGAGGTG GGAGGATGGC TTGAGCCCAG 001520
001521 GAGTTTGAGG CTGCAGTGAG CCATGATTGC ACCACTGCAC TCCAGCCTGG AAAACGGAGT GAGAGTGTCT TAAAGAAAAA 001600
001601 GGGGCCCTAG AGAGTTCTCT GGTACCCTGG TTTCAGACTT CTAGCCTCCA GAATGGTGAG AAATAAATAT GTATTTTTTA 001680
001681 CGAAAAAAAA AAAAAAAAAA AA
000081 GATCTAAGCA CCAGAACCTG AGCTGATGGC ACAACTGCCC AGTGCCCAGA TGCCGGCTCC CCGAACACAG CCCGACCTCA 000160
000161 TCCTGGTTCA TCCAGTGCTG GCCCTGTCTG GACGAGCCCC AAGCATCCTC TGCTCGGTGC CCTGGGACGC CTGTGAACTC 000240
000241 CTGGCCACGG CTATGTGGTG GAAGACACGG ATTCTGTGGG GGGTTTTCCT TATCTCTAGG ACTCGCCCAC CTGCTCCCAT 000320
000321 GCAAATCCTC ATTTTAACTC TGGATCCCAG TGAAGGAGAG GTGTGTTGTA AGAAGAGGAA ACCTGGACAG ACAGGAAGAA 000400
000401 ACCGAGTGAG GATGACGACA GCCACCTGCA AGCCAGGAGG AGAGGCCTCA GGAGAAACCA GCCCTGGGAC ACCCTAATCA 000480
000481 CAGGCGTCCG CCCCCACAAC GGTGAGAGAA TGTTTCTGAT AAAACCACCC AGTTTTTGAT ACTTTCTTAT GGCAGCCCCA 000560
000561 GCAAACAAAA ACTGGCTCCA TGGCCTCCCC TGTCCTGGCC CCTCAGTCTC TACGACCTGG GCACCTTGCA AGCACAAGAA 000640
000641 AGGGACCCTC CAGTTCGGGG TGCCCACACA CCTTGCTTTC TTCCTTGAGC TCTGGTCACC AAGGAGGCAA AGGGGAGAGA 000720
000721 GGCTTCCAAG GGGCCCATCA TTTGGAAAGG GAAAACCAGC TTCTGTTGCC GTGGCAACTC CACTGGGATG CTCTGCTATT 000800
000801 TGCACATTTT GAAATTGGAG GTGGGTAGTG AGAAGGGAAA AAGGAAAGAA AAATTGAGGG AGATGAGAGT ATCCAGGGCA 000880
000881 AAAGAAAGGA GAGAAAAGCA AATGAAGTTT AGGAAAAATC CAGCTTCGGA CAGGTGACCC TGACAGTGCT TAATGACCTC 000960
000961 AGATGAGTCC CAGGGCCGCG GGGACTTCCC CATTAAGTCA TGGTGGCTCC AGCCAATGTC AGCCCAGGTC CCCCACTGTC 001040
001041 AGAGAGGAAA CAGAGGCTCG AAGATGAGAA GTGCCCTGCA CAAGGTCACC TTGTGACTTG GAGGATTCTC CAGGTAAAAG 001120
001121 CAGCCGTATT GGGGGAAGGC CTCTATTCTT GTAATGAACC AAACGTTTGT GCCAACCCCC CAAATTCATA TGTTGAAGTC 001200
001201 CTAACTCCCA ACGTGATGGT TTTATGAGGT GGGGTCTTTG GGAGGTAAGC AAGTCATAAG TGTAGAACCT TCATAAATAG 001280
001281 GATTAATGTC CTTATAAAAG GGACCCCCAG GACCTGGATA TGGTGGTGTG AACCTGCAAT CCCAGTGCTT TGGGAGGCTG 001360
001361 AGGTGGGAGG ATCCCTTGAG GCCACAAGTT TGAGACCAGC CTGGGCAACA TGGCAAGACC CCATCTATAC AGAAAATACA 001440
001441 AAAATTAGCC AGGTATGGTG GTGCACACCT GTAGTCCCAG CTACTTGGGA GGCTGAGGTG GGAGGATGGC TTGAGCCCAG 001520
001521 GAGTTTGAGG CTGCAGTGAG CCATGATTGC ACCACTGCAC TCCAGCCTGG AAAACGGAGT GAGAGTGTCT TAAAGAAAAA 001600
001601 GGGGCCCTAG AGAGTTCTCT GGTACCCTGG TTTCAGACTT CTAGCCTCCA GAATGGTGAG AAATAAATAT GTATTTTTTA 001680
001681 CGAAAAAAAA AAAAAAAAAA AA
Predicted Small Protein
| Name | SHANK2-AS3_smProtein_548:811 |
| Length | 87 |
| Molecular weight | 9325.813 |
| Aromaticity | 0.0919540229885 |
| Instability index | 47.0494252874 |
| Isoelectric point | 10.3263549805 |
| Runs | 11 |
| Runs residual | 0.0118226600985 |
| Runs probability | 0.0495896966486 |
| Amino acid sequence | MAAPANKNWLHGLPCPGPSVSTTWAPCKHKKGTLQFGVPTHLAFFLELWSPRRQRGERLP RGPSFGKGKPASVAVATPLGCSAICTF |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLHHHHHHHHHLLLHHHLLLLLL LLLLLLLLLLLEEEEELLLLLEEEEEL |
| PRMN | - |
| PiMo | - |
