Difference between revisions of "ZIM2-AS1"
Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== ZIM2-AS1 ===Approved Name=== ZIM2 antisense RNA 1 ===Previous Symbols=== _ ===Synonyms=== ZIM2as ===Chromosome=== 19q13.43 ===R...") |
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Latest revision as of 05:24, 23 June 2016
Contents
Annotated Information
Approved Symbol
ZIM2-AS1
Approved Name
ZIM2 antisense RNA 1
Previous Symbols
_
Synonyms
ZIM2as
Chromosome
19q13.43
RefSeq ID
NR_110744
OMIM ID
_
Ensembl ID
ENSG00000269793
pubmed IDs
19539734
Sequence
>gi|587651957|ref|NR_110744.1| Homo sapiens ZIM2 antisense RNA 1 (ZIM2-AS1), long non-coding RNA
000001 TTTCCGCTTC CGGTGGCGTT TTAGCGGGAG ATCCGAGCGT CTCGGCTGGT GGAAGGGGCG AGGAGCTTTG CAGTTGTGTG 000080
000081 CGAGTGTGTA CAGGGACAGA GTCCTGAGCA AGGAAACCTA GAAGGGAGAG AGGAATACCA TGGAATTGAG TCCTGTCTGG 000160
000161 TAGCACTGAC AGACACAGTG GCCAGCCACC CTCATGCCAC CCTGTCCTGC CATGGGAAGG AACAGCAGCT CTAGAGTTCC 000240
000241 TATGGGAACT CTCTTTCCTT CTCACTGAAC TCTAGCTTCA TCAATAACTC AGTGCCTCTG GCCAAGTTTT TAGCCTCTGG 000320
000321 GACAACATCC ACTATATCCA TATGAGGCAC TCATGTAACA CGGTGATTAA GAGTACAGAT GCTGAAGCCA GCAGCCTAAG 000400
000401 TCTGAATCCT GACTGCCAAT TATTAATATA AGTTGTGGAA CCATGGTCAA GTTACTCAAC CTCTTTATGC CTCTGTCTCC 000480
000481 TGGTCTACGA AATGAAGCTT TGAATCTGCT GTTATTAAGT TGCTGGTGCT GAAATAACAC TTATTATTTA TGATCTAACT 000560
000561 GAAATGGGAA CACTGGAAAC TTCTTTGAAA CTGAAGAAAA AAATGAAAAA GAAGTTTTTA CAATCAAAAC TGCCATGAAG 000640
000641 ACTGCTTTAC CCAAAATTTT GGTCCACAGC TTTCATTGAA TTACTTATCA GGGCAAACAA AGTTTAGCCA TGTGAACACG 000720
000721 TTCCAATTTT GTTGGAAATA ATTTGGATCC AGCTATCTTT ATACAATGGT GAGTTCGTAT TGCATCTCAT GGCTAAAATA 000800
000801 CTGAGGTAAA GGCTTTTGGA TCTTTGTGTG TGTGTGTGTG CATGTGACAA AAACAAGCAA TGGGGAAAGG AGTCCCTATT 000880
000881 TAATAAATGG TGTTGGGAGA ACTGGCTAGC CATATGCAGA AAGTTGAAAC TGGAGCCCCT CCTTATACCA TATACAAAAA 000960
000961 TCAACTCAAG ATGAATTAAA GACTTAAATG TAAAAACCCA AACTATAAAA ACCCTAGAAG AAAATCTAGG CAATACCATT 001040
001041 CAGGACATGG GCACAGGCAA ATATTTCATG ACAAAGATGC CAAAAGCAGT AGCAACAAAA GCAAAAATTG ACAAATGGAA 001120
001121 TCTAATTAAA CTAAAGAGCT TCTGTACAGC AAAGAAATTA TCATCAGAGT GAACAGACAG CTTACAGCAT GGGAGAAAAT 001200
001201 TTTTGCAGTA TATCCATCTG ACAAAGGTCT AATATTCAGC ATCTACAAGG AACTTAAACA AATTTACAAG AAAAAAAAAC 001280
001281 AACGCCATTA AAAAATGGGC AAAGGACGTG GACAGACACT TCTCAAAAGA AGAAATTTAT GTGGGCAATG AACATTTTTT 001360
001361 TTAAAAAAGC TCAACACCAC TGATCATTAG AGAAATGCAC ATGAAAACCA CAATGAGATA CCATCTCACA CCAGTCAGAA 001440
001441 TGGCTATTAC TTAAAGGTCA AAAAACAACA GATGATAGCA AGGTTGTGAA GAAAAATGAA CACTTTTATA CGTTGGTTGG 001520
001521 AGTATAAATT AGTTCTACCC TTGTCGAAGA CAGTGTGGTG ATTCCTCAAA GACCTAGGGG AAGAAATATC ATTTGACCCA 001600
001601 GCAATCTCAT TACTGGGTAT ATACCCAGAG GAATATAAAT CATTCTATTA TAAAGATACA TGTGCATGTT CATTGCAAAA 001680
001681 TAGCAAAAAC ATGGAATCAA CCTAAATGCT CATCAATGAC AGACTTGATA AAGGAAATAT GGTACGTATA CACCAAGGAA 001760
001761 TACCATGCAG CCATAAAAAG GAACAAGATA ATGTCTTTTG CAGGGACCTG GATGGAACCA GAAGCCATTA TCCTCAGCAA 001840
001841 ATTAATGCAG GAACAGAAAA GCAAATACCA CATGTTCTCA CTTGTAAGTG GTAGCTGAAT GATGAGAACA CATGGACACA 001920
001921 TGGTGGGGAA CAATACACAC TGGGGCCTGT TGCAGGGTGC GGAGTGGGAG GGAGAGCATC GGGAAGAATA GCTAATGCAT 002000
002001 GCTGGGCTTA ATACCTAGGG GATGGAATGA TCTGTGCTGC AAACCACTAT GGCACACATT TACCTATGTA ACAAACCTAC 002080
002081 ACATCCTGCA CATGTACCCC TGACCTTAAA ATAAAAGTTG GAAATAAAAA AAACCCTAAA CATATACCTA C
000081 CGAGTGTGTA CAGGGACAGA GTCCTGAGCA AGGAAACCTA GAAGGGAGAG AGGAATACCA TGGAATTGAG TCCTGTCTGG 000160
000161 TAGCACTGAC AGACACAGTG GCCAGCCACC CTCATGCCAC CCTGTCCTGC CATGGGAAGG AACAGCAGCT CTAGAGTTCC 000240
000241 TATGGGAACT CTCTTTCCTT CTCACTGAAC TCTAGCTTCA TCAATAACTC AGTGCCTCTG GCCAAGTTTT TAGCCTCTGG 000320
000321 GACAACATCC ACTATATCCA TATGAGGCAC TCATGTAACA CGGTGATTAA GAGTACAGAT GCTGAAGCCA GCAGCCTAAG 000400
000401 TCTGAATCCT GACTGCCAAT TATTAATATA AGTTGTGGAA CCATGGTCAA GTTACTCAAC CTCTTTATGC CTCTGTCTCC 000480
000481 TGGTCTACGA AATGAAGCTT TGAATCTGCT GTTATTAAGT TGCTGGTGCT GAAATAACAC TTATTATTTA TGATCTAACT 000560
000561 GAAATGGGAA CACTGGAAAC TTCTTTGAAA CTGAAGAAAA AAATGAAAAA GAAGTTTTTA CAATCAAAAC TGCCATGAAG 000640
000641 ACTGCTTTAC CCAAAATTTT GGTCCACAGC TTTCATTGAA TTACTTATCA GGGCAAACAA AGTTTAGCCA TGTGAACACG 000720
000721 TTCCAATTTT GTTGGAAATA ATTTGGATCC AGCTATCTTT ATACAATGGT GAGTTCGTAT TGCATCTCAT GGCTAAAATA 000800
000801 CTGAGGTAAA GGCTTTTGGA TCTTTGTGTG TGTGTGTGTG CATGTGACAA AAACAAGCAA TGGGGAAAGG AGTCCCTATT 000880
000881 TAATAAATGG TGTTGGGAGA ACTGGCTAGC CATATGCAGA AAGTTGAAAC TGGAGCCCCT CCTTATACCA TATACAAAAA 000960
000961 TCAACTCAAG ATGAATTAAA GACTTAAATG TAAAAACCCA AACTATAAAA ACCCTAGAAG AAAATCTAGG CAATACCATT 001040
001041 CAGGACATGG GCACAGGCAA ATATTTCATG ACAAAGATGC CAAAAGCAGT AGCAACAAAA GCAAAAATTG ACAAATGGAA 001120
001121 TCTAATTAAA CTAAAGAGCT TCTGTACAGC AAAGAAATTA TCATCAGAGT GAACAGACAG CTTACAGCAT GGGAGAAAAT 001200
001201 TTTTGCAGTA TATCCATCTG ACAAAGGTCT AATATTCAGC ATCTACAAGG AACTTAAACA AATTTACAAG AAAAAAAAAC 001280
001281 AACGCCATTA AAAAATGGGC AAAGGACGTG GACAGACACT TCTCAAAAGA AGAAATTTAT GTGGGCAATG AACATTTTTT 001360
001361 TTAAAAAAGC TCAACACCAC TGATCATTAG AGAAATGCAC ATGAAAACCA CAATGAGATA CCATCTCACA CCAGTCAGAA 001440
001441 TGGCTATTAC TTAAAGGTCA AAAAACAACA GATGATAGCA AGGTTGTGAA GAAAAATGAA CACTTTTATA CGTTGGTTGG 001520
001521 AGTATAAATT AGTTCTACCC TTGTCGAAGA CAGTGTGGTG ATTCCTCAAA GACCTAGGGG AAGAAATATC ATTTGACCCA 001600
001601 GCAATCTCAT TACTGGGTAT ATACCCAGAG GAATATAAAT CATTCTATTA TAAAGATACA TGTGCATGTT CATTGCAAAA 001680
001681 TAGCAAAAAC ATGGAATCAA CCTAAATGCT CATCAATGAC AGACTTGATA AAGGAAATAT GGTACGTATA CACCAAGGAA 001760
001761 TACCATGCAG CCATAAAAAG GAACAAGATA ATGTCTTTTG CAGGGACCTG GATGGAACCA GAAGCCATTA TCCTCAGCAA 001840
001841 ATTAATGCAG GAACAGAAAA GCAAATACCA CATGTTCTCA CTTGTAAGTG GTAGCTGAAT GATGAGAACA CATGGACACA 001920
001921 TGGTGGGGAA CAATACACAC TGGGGCCTGT TGCAGGGTGC GGAGTGGGAG GGAGAGCATC GGGAAGAATA GCTAATGCAT 002000
002001 GCTGGGCTTA ATACCTAGGG GATGGAATGA TCTGTGCTGC AAACCACTAT GGCACACATT TACCTATGTA ACAAACCTAC 002080
002081 ACATCCTGCA CATGTACCCC TGACCTTAAA ATAAAAGTTG GAAATAAAAA AAACCCTAAA CATATACCTA C
Predicted Small Protein
| Name | ZIM2-AS1_smProtein_1715:1897 |
| Length | 60 |
| Molecular weight | 7103.2872 |
| Aromaticity | 0.133333333333 |
| Instability index | 41.6116666667 |
| Isoelectric point | 9.00518798828 |
| Runs | 9 |
| Runs residual | 0.000265957446809 |
| Runs probability | 0.0477732634597 |
| Amino acid sequence | MTDLIKEIWYVYTKEYHAAIKRNKIMSFAGTWMEPEAIILSKLMQEQKSKYHMFSLVSGS |
| Secondary structure | LHHHHHHHHHHHHHHHHHHHHHLHHHHHLLLLLLHHHHHHHHHHHHHHLLLLLEEEEELL |
| PRMN | - |
| PiMo | - |
