MethBank| Sample Name | Data Resource | Description | BioProject ID | Project ID | Sample ID | Experiment ID | Status | Submission Date | Last Update Date | Donor ID | Species | Tissue/Cell Line | Cell Type | Source Name | Strain | Breed | Cultivar | Sex | Age | Biological Context | Healthy Condition | Disease State | Development Stage | Genotype | Treatment | Knockout | Resistance Phenotype | Growth Protocol | Treatment Protocol | Extract Protocol | Construction Protocol | Library Strategy | Library Source | Library Selection | Layout | Platform | Quality Assessment (%) | Mapping Rate (%) | Uniquely Mapping Rate (%) | Genome Coverage (%) | C Coverage (%) | Conversion Rate (%) | Depth | Reference Genome | Genome Annotation | View In JBrowse | CpG Islands |
|---|
Quality control is performed based on criteria listed in the table. The green
represents “pass”, while the red represents “fail”. Mouse-over to view details.
In the Samples
interface, you can enter customized cut off values to filter samples that meet the criteria.
| Mapping rate | Unique mapping rate | Genome coverage | C coverage | Conversion rate | Depth | |
|---|---|---|---|---|---|---|
| Green | >=0.8 | >=0.65 | >=0.8 | >=0.8 | >=0.995 | >=20 |
| Red | <0.8 | <0.65 | <0.8 | <0.8 | <0.995 | <20 |