MethBank
a database of DNA methylomes across a variety of species

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Gene

Oryza_sativa Rice Os01g0100700

Basic Information

Gene ID Gene Symbol Chromosome Strand Start Position End Position Description
Os01g0100700 - chr01 + 27143 28644 40S ribosomal protein S5, putative, expressed

Methylation Profile

Sample Methylation Type Methylation Level in Promoter Methylation Level in Gene Body Methylation Level in Downstream JBrowse
Callus_WT C 0.09 0.15 0.22 View
Callus_WT CG 0.33 0.11 0.26 View
Callus_WT CH 0.04 0.16 0.21 View
Leaf_12d C 0.05 0.00 0.17 View
Leaf_12d CG 0.29 0.00 0.43 View
Leaf_12d CH 0.00 0.00 0.12 View
Leaf_3w_T2-PiZt-11-R C 0.07 0.03 0.13 View
Leaf_3w_T2-PiZt-11-R CG 0.28 0.07 0.24 View
Leaf_3w_T2-PiZt-11-R CH 0.03 0.02 0.10 View
Leaf_3w_T2-PiZt-11-S C 0.06 0.02 0.13 View
Leaf_3w_T2-PiZt-11-S CG 0.28 0.03 0.24 View
Leaf_3w_T2-PiZt-11-S CH 0.02 0.02 0.10 View
Leaf_3w_T2-PiZt-839-8-R C 0.04 0.02 0.12 View
Leaf_3w_T2-PiZt-839-8-R CG 0.24 0.02 0.24 View
Leaf_3w_T2-PiZt-839-8-R CH 0.00 0.02 0.08 View
Leaf_3w_T2-PiZt-839-8-S C 0.06 0.06 0.10 View
Leaf_3w_T2-PiZt-839-8-S CG 0.32 0.07 0.24 View
Leaf_3w_T2-PiZt-839-8-S CH 0.01 0.06 0.05 View
Leaf_3w_T4-PiZt-11-R C 0.05 0.01 0.11 View
Leaf_3w_T4-PiZt-11-R CG 0.26 0.01 0.21 View
Leaf_3w_T4-PiZt-11-R CH 0.01 0.01 0.09 View
Leaf_3w_T4-PiZt-11-S C 0.05 0.01 0.13 View
Leaf_3w_T4-PiZt-11-S CG 0.24 0.00 0.23 View
Leaf_3w_T4-PiZt-11-S CH 0.01 0.01 0.10 View
Leaf_3w_T6-Pi9-R C 0.04 0.00 0.17 View
Leaf_3w_T6-Pi9-R CG 0.18 0.00 0.25 View
Leaf_3w_T6-Pi9-R CH 0.01 0.00 0.15 View
Leaf_3w_T6-PiZt-11-R C 0.04 0.00 0.15 View
Leaf_3w_T6-PiZt-11-R CG 0.20 0.00 0.24 View
Leaf_3w_T6-PiZt-11-R CH 0.01 0.00 0.12 View
Leaf_3w_T6-Spin1i-1-R C 0.05 0.01 0.13 View
Leaf_3w_T6-Spin1i-1-R CG 0.23 0.01 0.24 View
Leaf_3w_T6-Spin1i-1-R CH 0.01 0.01 0.09 View
Leaf_3w_WT2003 C 0.06 0.02 0.10 View
Leaf_3w_WT2003 CG 0.27 0.02 0.23 View
Leaf_3w_WT2003 CH 0.01 0.03 0.05 View
Leaf_3w_WT2007 C 0.08 0.00 0.14 View
Leaf_3w_WT2007 CG 0.33 0.00 0.26 View
Leaf_3w_WT2007 CH 0.03 0.00 0.11 View
Leaf_3w_WT2011 C 0.05 0.05 0.15 View
Leaf_3w_WT2011 CG 0.31 0.08 0.25 View
Leaf_3w_WT2011 CH 0.00 0.04 0.13 View
Leaf_3w_WT2011_replicate C 0.06 0.09 0.13 View
Leaf_3w_WT2011_replicate CG 0.29 0.05 0.25 View
Leaf_3w_WT2011_replicate CH 0.01 0.10 0.09 View
Leaf_3w_WT_regenerated C 0.06 0.04 0.15 View
Leaf_3w_WT_regenerated CG 0.30 0.04 0.24 View
Leaf_3w_WT_regenerated CH 0.01 0.04 0.12 View
Leaf_6w C 0.05 0.00 0.11 View
Leaf_6w CG 0.25 0.00 0.21 View
Leaf_6w CH 0.00 0.00 0.09 View
Panicle_52d+Pi C 0.06 0.00 0.13 View
Panicle_52d+Pi CG 0.30 0.00 0.25 View
Panicle_52d+Pi CH 0.01 0.00 0.10 View
Panicle_52d-Pi C 0.06 0.00 0.16 View
Panicle_52d-Pi CG 0.29 0.00 0.26 View
Panicle_52d-Pi CH 0.01 0.00 0.13 View
Panicle_52d_Re C 0.06 0.00 0.15 View
Panicle_52d_Re CG 0.30 0.01 0.26 View
Panicle_52d_Re CH 0.02 0.00 0.12 View
Progeny_of_Pi_starved_parent C 0.06 0.00 0.12 View
Progeny_of_Pi_starved_parent CG 0.32 0.00 0.27 View
Progeny_of_Pi_starved_parent CH 0.01 0.00 0.07 View
Progeny_of_non-starved_parent C 0.06 0.00 0.12 View
Progeny_of_non-starved_parent CG 0.32 0.00 0.26 View
Progeny_of_non-starved_parent CH 0.01 0.00 0.08 View
Root_21d+Pi C 0.05 0.00 0.14 View
Root_21d+Pi CG 0.29 0.01 0.27 View
Root_21d+Pi CH 0.00 0.00 0.10 View
Root_21d-Pi C 0.06 0.00 0.14 View
Root_21d-Pi CG 0.30 0.00 0.27 View
Root_21d-Pi CH 0.01 0.00 0.10 View
Root_21d-Pi_1d+Pi C 0.06 0.00 0.13 View
Root_21d-Pi_1d+Pi CG 0.30 0.00 0.26 View
Root_21d-Pi_1d+Pi CH 0.01 0.00 0.09 View
Root_21d-Pi_3d+Pi C 0.06 0.00 0.17 View
Root_21d-Pi_3d+Pi CG 0.29 0.00 0.29 View
Root_21d-Pi_3d+Pi CH 0.01 0.00 0.13 View
Root_22d+Pi C 0.05 0.00 0.12 View
Root_22d+Pi CG 0.27 0.00 0.26 View
Root_22d+Pi CH 0.01 0.00 0.09 View
Root_22d-Pi C 0.05 0.00 0.13 View
Root_22d-Pi CG 0.28 0.00 0.27 View
Root_22d-Pi CH 0.01 0.00 0.09 View
Root_24d+Pi C 0.06 0.00 0.14 View
Root_24d+Pi CG 0.32 0.00 0.26 View
Root_24d+Pi CH 0.01 0.00 0.11 View
Root_24d-Pi C 0.06 0.00 0.13 View
Root_24d-Pi CG 0.27 0.01 0.26 View
Root_24d-Pi CH 0.01 0.00 0.09 View
Root_52d+Pi C 0.06 0.00 0.14 View
Root_52d+Pi CG 0.30 0.00 0.27 View
Root_52d+Pi CH 0.01 0.00 0.11 View
Root_52d-Pi C 0.06 0.00 0.16 View
Root_52d-Pi CG 0.29 0.00 0.27 View
Root_52d-Pi CH 0.01 0.00 0.13 View
Root_52d_Re C 0.06 0.00 0.14 View
Root_52d_Re CG 0.29 0.01 0.27 View
Root_52d_Re CH 0.01 0.00 0.11 View
Root_7d+Pi C 0.05 0.00 0.10 View
Root_7d+Pi CG 0.27 0.01 0.26 View
Root_7d+Pi CH 0.01 0.00 0.06 View
Root_7d-Pi C 0.06 0.00 0.09 View
Root_7d-Pi CG 0.30 0.00 0.27 View
Root_7d-Pi CH 0.01 0.00 0.04 View
Seed_12h C 0.06 0.01 0.18 View
Seed_12h CG 0.24 0.02 0.23 View
Seed_12h CH 0.03 0.01 0.17 View
Seed_DRY C 0.07 0.01 0.20 View
Seed_DRY CG 0.30 0.01 0.26 View
Seed_DRY CH 0.03 0.00 0.18 View
Seed_SDLG C 0.08 0.01 0.18 View
Seed_SDLG CG 0.32 0.00 0.24 View
Seed_SDLG CH 0.02 0.01 0.16 View
Shoot_11d_Mm C 0.04 0.00 0.16 View
Shoot_11d_Mm CG 0.19 0.00 0.25 View
Shoot_11d_Mm CH 0.01 0.01 0.13 View
Shoot_11d_WT C 0.05 0.00 0.14 View
Shoot_11d_WT CG 0.21 0.01 0.25 View
Shoot_11d_WT CH 0.02 0.00 0.12 View
Shoot_11d_mm C 0.01 0.01 0.02 View
Shoot_11d_mm CG 0.03 0.00 0.03 View
Shoot_11d_mm CH 0.01 0.01 0.02 View
Shoot_21d+Pi C 0.06 0.00 0.14 View
Shoot_21d+Pi CG 0.29 0.00 0.27 View
Shoot_21d+Pi CH 0.02 0.00 0.10 View
Shoot_21d-Pi C 0.06 0.01 0.13 View
Shoot_21d-Pi CG 0.28 0.01 0.28 View
Shoot_21d-Pi CH 0.01 0.01 0.09 View