strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name
DRR161219,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,DRR161219_AMRSEG0001,NODE_11_length_212905_cov_18.668247,negative,3524-4210,100.0,84.28,,,,,,660.0,,
DRR161219,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,DRR161219_AMRSEG0002,NODE_16_length_126063_cov_18.829460,positive,12689-13118,99.31,80.97,,,,,,660.0,,
DRR161219,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,DRR161219_AMRSEG0003,NODE_1_length_702364_cov_19.211378,negative,94824-95411,100.0,88.27,,,,,,660.0,,
DRR161219,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",DRR161219_AMRSEG0004,NODE_1_length_702364_cov_19.211378,negative,121035-121694,94.02,80.91,,,,,,660.0,,
DRR161219,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,DRR161219_AMRSEG0005,NODE_2_length_662859_cov_18.344331,positive,87508-87839,96.23,92.47,,,,,,660.0,,
DRR161219,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,DRR161219_AMRSEG0006,NODE_3_length_656647_cov_18.374656,negative,3760-4644,100.0,85.31,,,,,,660.0,,
DRR161219,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",DRR161219_AMRSEG0007,NODE_4_length_455559_cov_18.722114,positive,3205-6690,98.85,80.62,,,,,,660.0,,
DRR161219,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",DRR161219_AMRSEG0008,NODE_5_length_424991_cov_18.708553,positive,5606-6804,97.4,89.17,,,,,,660.0,,
DRR161219,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,DRR161219_AMRSEG0009,NODE_5_length_424991_cov_18.708553,positive,171651-172884,97.7,83.22,,,,,,660.0,,
DRR161219,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,DRR161219_AMRSEG0010,NODE_6_length_397178_cov_19.085534,positive,175139-176644,99.34,81.35,,,,,,660.0,,
SRR8379271,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR8379271_AMRSEG0001,NODE_120_length_14421_cov_13.625644,positive,12286-13791,99.34,81.49,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379271,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR8379271_AMRSEG0002,NODE_15_length_87112_cov_16.076417,positive,11350-12586,97.7,82.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379271,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8379271_AMRSEG0003,NODE_31_length_67547_cov_16.252489,negative,18249-18580,96.23,91.87,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379271,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR8379271_AMRSEG0004,NODE_3_length_200487_cov_16.997835,negative,144273-144860,100.0,87.58,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379271,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8379271_AMRSEG0005,NODE_44_length_57212_cov_15.744965,negative,28275-28961,100.0,84.72,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379271,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8379271_AMRSEG0006,NODE_58_length_45511_cov_15.954057,negative,39430-40642,98.54,88.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379271,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8379271_AMRSEG0007,NODE_64_length_43391_cov_17.334449,negative,34248-37733,98.94,80.78,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379271,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,SRR8379271_AMRSEG0008,NODE_72_length_37918_cov_16.713089,negative,17704-18133,99.54,80.47,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379271,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR8379271_AMRSEG0009,NODE_78_length_30497_cov_17.436256,positive,25526-26192,94.73,82.31,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379271,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR8379271_AMRSEG0010,NODE_84_length_26867_cov_16.133003,negative,3713-4597,100.0,85.65,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379272,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,SRR8379272_AMRSEG0001,NODE_11_length_164756_cov_46.406022,positive,146623-147052,99.54,80.47,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379272,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8379272_AMRSEG0002,NODE_17_length_123011_cov_45.899388,negative,116757-117969,98.54,88.3,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379272,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR8379272_AMRSEG0003,NODE_26_length_87169_cov_45.638039,negative,74584-75820,97.7,82.3,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379272,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8379272_AMRSEG0004,NODE_2_length_335728_cov_46.672575,positive,57637-61122,98.94,80.78,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379272,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8379272_AMRSEG0005,NODE_39_length_62803_cov_46.106551,negative,33867-34553,100.0,84.72,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379272,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR8379272_AMRSEG0006,NODE_3_length_280537_cov_49.344463,positive,75116-75782,94.73,82.31,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379272,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR8379272_AMRSEG0007,NODE_3_length_280537_cov_49.344463,positive,135678-136265,100.0,87.58,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379272,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8379272_AMRSEG0008,NODE_4_length_235016_cov_45.121995,positive,49041-49372,96.23,91.87,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379272,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR8379272_AMRSEG0009,NODE_69_length_26890_cov_46.423976,negative,3713-4597,100.0,85.65,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379272,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR8379272_AMRSEG0010,NODE_86_length_14437_cov_38.702449,positive,12286-13791,99.34,81.49,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379274,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR8379274_AMRSEG0001,NODE_115_length_14443_cov_16.403894,negative,653-2158,99.34,81.49,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379274,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8379274_AMRSEG0002,NODE_16_length_94068_cov_17.904750,negative,44765-45096,96.23,91.87,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379274,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR8379274_AMRSEG0003,NODE_18_length_87082_cov_17.516404,negative,74497-75733,97.7,82.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379274,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8379274_AMRSEG0004,NODE_1_length_326916_cov_18.413495,negative,274607-278092,98.94,80.78,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379274,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR8379274_AMRSEG0005,NODE_2_length_231104_cov_19.432486,positive,25529-26195,94.73,82.31,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379274,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR8379274_AMRSEG0006,NODE_2_length_231104_cov_19.432486,positive,86091-86678,100.0,87.58,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379274,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8379274_AMRSEG0007,NODE_36_length_62804_cov_19.443856,negative,33867-34553,100.0,84.72,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379274,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,SRR8379274_AMRSEG0008,NODE_5_length_164756_cov_18.491454,negative,17705-18134,99.54,80.47,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379274,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8379274_AMRSEG0009,NODE_62_length_45498_cov_18.138087,positive,4930-6142,98.54,88.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379274,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR8379274_AMRSEG0010,NODE_88_length_26889_cov_17.260605,negative,3721-4605,100.0,85.65,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379275,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR8379275_AMRSEG0001,NODE_15_length_113402_cov_20.409241,negative,26730-27317,100.0,87.58,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379275,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR8379275_AMRSEG0002,NODE_15_length_113402_cov_20.409241,negative,87213-87879,94.73,82.31,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379275,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR8379275_AMRSEG0003,NODE_27_length_81872_cov_17.752876,positive,77276-78160,100.0,85.65,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379275,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8379275_AMRSEG0004,NODE_30_length_78564_cov_18.521662,negative,29256-29587,96.23,91.87,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379275,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8379275_AMRSEG0005,NODE_3_length_231820_cov_18.736051,negative,179469-182954,98.94,80.78,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379275,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8379275_AMRSEG0006,NODE_40_length_62804_cov_18.738959,positive,28252-28938,100.0,84.72,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379275,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR8379275_AMRSEG0007,NODE_54_length_49695_cov_17.204183,negative,647-2152,99.34,81.49,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379275,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8379275_AMRSEG0008,NODE_57_length_45615_cov_18.574684,negative,39545-40757,98.54,88.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379275,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,SRR8379275_AMRSEG0009,NODE_69_length_34446_cov_19.551697,negative,14232-14661,99.54,80.47,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379275,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR8379275_AMRSEG0010,NODE_77_length_29188_cov_18.528824,negative,16603-17839,97.7,82.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379276,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8379276_AMRSEG0001,NODE_1_length_326991_cov_25.150116,negative,274607-278092,98.94,80.78,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379276,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR8379276_AMRSEG0002,NODE_2_length_230945_cov_26.744623,negative,144273-144860,100.0,87.58,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379276,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR8379276_AMRSEG0003,NODE_2_length_230945_cov_26.744623,negative,204756-205422,94.73,82.31,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379276,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8379276_AMRSEG0004,NODE_41_length_62809_cov_25.629506,negative,33872-34558,100.0,84.72,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379276,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8379276_AMRSEG0005,NODE_4_length_226222_cov_24.228578,negative,176919-177250,96.23,91.87,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379276,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR8379276_AMRSEG0006,NODE_53_length_46418_cov_24.202567,positive,44283-45788,99.34,81.49,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379276,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8379276_AMRSEG0007,NODE_54_length_45713_cov_24.956145,negative,39397-40609,98.54,88.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379276,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,SRR8379276_AMRSEG0008,NODE_66_length_34427_cov_26.559539,positive,19769-20198,99.54,80.47,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379276,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR8379276_AMRSEG0009,NODE_75_length_26913_cov_24.543277,negative,3713-4597,100.0,85.65,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379276,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR8379276_AMRSEG0010,NODE_7_length_165470_cov_25.249814,negative,152885-154121,97.7,82.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379277,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR8379277_AMRSEG0001,NODE_114_length_14443_cov_23.636926,negative,653-2158,99.34,81.49,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379277,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR8379277_AMRSEG0002,NODE_11_length_113787_cov_26.472943,positive,109191-110075,100.0,85.65,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379277,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8379277_AMRSEG0003,NODE_1_length_325736_cov_27.215600,positive,47645-51130,98.94,80.78,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379277,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR8379277_AMRSEG0004,NODE_21_length_87119_cov_26.982287,positive,11350-12586,97.7,82.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379277,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR8379277_AMRSEG0005,NODE_2_length_256074_cov_28.443497,positive,50653-51319,94.73,82.31,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379277,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR8379277_AMRSEG0006,NODE_2_length_256074_cov_28.443497,positive,111215-111802,100.0,87.58,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379277,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8379277_AMRSEG0007,NODE_3_length_226281_cov_26.522885,negative,176955-177286,96.23,91.87,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379277,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8379277_AMRSEG0008,NODE_40_length_62803_cov_27.124418,negative,33867-34553,100.0,84.72,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379277,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8379277_AMRSEG0009,NODE_64_length_41039_cov_27.462734,negative,34965-36177,98.54,88.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379277,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,SRR8379277_AMRSEG0010,NODE_68_length_37912_cov_27.446749,positive,19780-20209,99.54,80.47,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379278,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8379278_AMRSEG0001,NODE_1_length_326929_cov_22.466124,positive,48838-52323,98.94,80.78,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379278,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR8379278_AMRSEG0002,NODE_21_length_87131_cov_22.481210,positive,11350-12586,97.7,82.3,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379278,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8379278_AMRSEG0003,NODE_28_length_78575_cov_23.063583,positive,48999-49330,96.23,91.87,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379278,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR8379278_AMRSEG0004,NODE_2_length_256074_cov_23.604122,negative,144273-144860,100.0,87.58,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379278,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR8379278_AMRSEG0005,NODE_2_length_256074_cov_23.604122,negative,204756-205422,94.73,82.31,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379278,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8379278_AMRSEG0006,NODE_45_length_57233_cov_22.112314,positive,28251-28937,100.0,84.72,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379278,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR8379278_AMRSEG0007,NODE_55_length_46407_cov_21.365657,negative,620-2125,99.34,81.49,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379278,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8379278_AMRSEG0008,NODE_58_length_45483_cov_22.574395,positive,4870-6082,98.54,88.3,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379278,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,SRR8379278_AMRSEG0009,NODE_68_length_34444_cov_21.980105,negative,14230-14659,99.54,80.47,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379278,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR8379278_AMRSEG0010,NODE_80_length_26890_cov_23.334924,positive,22294-23178,100.0,85.65,Environment,Environment: urban environment,Environment:Urban enviroment:ice machine,United States of America,2017/1/1,,,
SRR8379279,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8379279_AMRSEG0001,NODE_10_length_118328_cov_18.042371,positive,48959-52444,98.94,80.78,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379279,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR8379279_AMRSEG0002,NODE_116_length_14394_cov_15.711674,negative,604-2109,99.34,81.49,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379279,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8379279_AMRSEG0003,NODE_2_length_235006_cov_17.061985,positive,49035-49366,96.23,91.87,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379279,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8379279_AMRSEG0004,NODE_35_length_62807_cov_18.567257,negative,33870-34556,100.0,84.72,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379279,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR8379279_AMRSEG0005,NODE_3_length_226352_cov_19.179372,negative,139683-140270,100.0,87.58,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379279,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR8379279_AMRSEG0006,NODE_3_length_226352_cov_19.179372,negative,200166-200832,94.73,82.31,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379279,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8379279_AMRSEG0007,NODE_66_length_41164_cov_18.196516,positive,5037-6249,98.54,88.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379279,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,SRR8379279_AMRSEG0008,NODE_6_length_165042_cov_17.629601,negative,17705-18134,99.54,80.47,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379279,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR8379279_AMRSEG0009,NODE_73_length_33303_cov_16.770036,positive,11350-12586,97.7,82.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379279,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR8379279_AMRSEG0010,NODE_82_length_26894_cov_17.912862,negative,3713-4597,100.0,85.65,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379280,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR8379280_AMRSEG0001,NODE_111_length_14419_cov_18.663973,negative,629-2134,99.34,81.49,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379280,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8379280_AMRSEG0002,NODE_13_length_123806_cov_20.371795,negative,117676-118888,98.54,88.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379280,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8379280_AMRSEG0003,NODE_1_length_327034_cov_20.829508,positive,48943-52428,98.94,80.78,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379280,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8379280_AMRSEG0004,NODE_23_length_78586_cov_21.043325,positive,49002-49333,96.23,91.87,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379280,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR8379280_AMRSEG0005,NODE_2_length_251238_cov_21.682974,negative,138997-139584,100.0,87.58,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379280,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR8379280_AMRSEG0006,NODE_2_length_251238_cov_21.682974,negative,199480-200146,94.73,82.31,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379280,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8379280_AMRSEG0007,NODE_39_length_62803_cov_20.967198,positive,28251-28937,100.0,84.72,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379280,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,SRR8379280_AMRSEG0008,NODE_66_length_37896_cov_21.072027,negative,17704-18133,99.54,80.47,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379280,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR8379280_AMRSEG0009,NODE_73_length_33261_cov_20.044310,positive,11350-12586,97.7,82.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379280,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR8379280_AMRSEG0010,NODE_81_length_26896_cov_20.188611,positive,22300-23184,100.0,85.65,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379281,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR8379281_AMRSEG0001,NODE_115_length_14428_cov_17.225339,positive,12286-13791,99.34,81.49,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379281,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8379281_AMRSEG0002,NODE_1_length_205154_cov_19.707759,positive,48917-52402,98.94,80.78,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379281,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR8379281_AMRSEG0003,NODE_25_length_85922_cov_18.934159,positive,11350-12586,97.7,82.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379281,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8379281_AMRSEG0004,NODE_28_length_78600_cov_18.249729,negative,29256-29587,96.23,91.87,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379281,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8379281_AMRSEG0005,NODE_42_length_62804_cov_18.946845,positive,28252-28938,100.0,84.72,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379281,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR8379281_AMRSEG0006,NODE_4_length_183954_cov_20.070531,negative,97277-97864,100.0,87.58,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379281,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR8379281_AMRSEG0007,NODE_4_length_183954_cov_20.070531,negative,157760-158426,94.73,82.31,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379281,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8379281_AMRSEG0008,NODE_71_length_40837_cov_19.609997,negative,34923-36135,98.54,88.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379281,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,SRR8379281_AMRSEG0009,NODE_75_length_34417_cov_19.567619,negative,14226-14655,99.54,80.47,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379281,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR8379281_AMRSEG0010,NODE_84_length_26926_cov_17.889625,positive,22330-23214,100.0,85.65,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379283,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,SRR8379283_AMRSEG0001,NODE_110_length_19709_cov_15.343327,negative,17704-18133,99.54,80.47,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379283,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR8379283_AMRSEG0002,NODE_130_length_14449_cov_12.089114,negative,659-2164,99.34,81.49,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379283,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8379283_AMRSEG0003,NODE_31_length_62807_cov_14.002901,negative,33870-34556,100.0,84.72,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379283,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR8379283_AMRSEG0004,NODE_50_length_52065_cov_14.783701,negative,1871-2458,100.0,87.58,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379283,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8379283_AMRSEG0005,NODE_55_length_45471_cov_13.599674,positive,4865-6077,98.54,88.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379283,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8379283_AMRSEG0006,NODE_5_length_140950_cov_14.493644,positive,48867-52352,98.94,80.78,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379283,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8379283_AMRSEG0007,NODE_67_length_37835_cov_13.435773,negative,24005-24336,96.23,91.87,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379283,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR8379283_AMRSEG0008,NODE_76_length_33163_cov_13.363746,positive,11350-12586,97.7,82.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379283,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR8379283_AMRSEG0009,NODE_92_length_27327_cov_15.315764,negative,1152-1818,94.73,82.31,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379283,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR8379283_AMRSEG0010,NODE_93_length_26803_cov_13.434069,positive,22207-23091,100.0,85.65,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379284,boenickei,146017,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8379284_AMRSEG0001,NODE_15_length_151745_cov_57.180905,negative,145831-147043,98.54,88.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379284,boenickei,146017,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8379284_AMRSEG0002,NODE_18_length_125301_cov_54.480948,negative,29259-29590,96.23,91.87,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379284,boenickei,146017,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8379284_AMRSEG0003,NODE_1_length_327047_cov_56.863168,negative,274607-278092,98.94,80.78,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379284,boenickei,146017,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR8379284_AMRSEG0004,NODE_28_length_87210_cov_55.844539,positive,11350-12586,97.7,82.3,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379284,boenickei,146017,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8379284_AMRSEG0005,NODE_40_length_62804_cov_57.643917,positive,28252-28938,100.0,84.72,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379284,boenickei,146017,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,SRR8379284_AMRSEG0006,NODE_4_length_238651_cov_57.208967,positive,223997-224426,99.54,80.47,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379284,boenickei,146017,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR8379284_AMRSEG0007,NODE_6_length_231135_cov_61.041766,positive,25560-26226,94.73,82.31,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379284,boenickei,146017,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR8379284_AMRSEG0008,NODE_6_length_231135_cov_61.041766,positive,86122-86709,100.0,87.58,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379284,boenickei,146017,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR8379284_AMRSEG0009,NODE_88_length_14432_cov_50.401629,negative,642-2147,99.34,81.49,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,
SRR8379284,boenickei,146017,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR8379284_AMRSEG0010,NODE_9_length_185617_cov_54.629386,positive,181021-181905,100.0,85.65,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:cystic fibrosis,United States of America,2017/1/1,,,