strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name
GCA_001052995.1,farcinogenes,1802,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCA_001052995.1_AMRSEG0001,CTEF01000001.1,negative,805070-805756,100.0,85.59,,,,,2015/4/20,7.0,,
GCA_001052995.1,farcinogenes,1802,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCA_001052995.1_AMRSEG0002,CTEF01000001.1,negative,1313486-1316974,99.05,80.77,,,,,2015/4/20,7.0,,
GCA_001052995.1,farcinogenes,1802,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,GCA_001052995.1_AMRSEG0003,CTEF01000001.1,negative,1455807-1456233,98.84,81.73,,,,,2015/4/20,7.0,,
GCA_001052995.1,farcinogenes,1802,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",GCA_001052995.1_AMRSEG0004,CTEF01000001.1,positive,2148996-2149660,94.73,80.48,,,,,2015/4/20,7.0,,
GCA_001052995.1,farcinogenes,1802,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCA_001052995.1_AMRSEG0005,CTEF01000003.1,negative,106236-107467,97.22,82.56,,,,,2015/4/20,7.0,,
GCA_001052995.1,farcinogenes,1802,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCA_001052995.1_AMRSEG0006,CTEF01000003.1,negative,251218-252430,98.62,87.47,,,,,2015/4/20,7.0,,
GCA_001052995.1,farcinogenes,1802,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCA_001052995.1_AMRSEG0007,CTEF01000004.1,positive,12000-12331,96.23,90.66,,,,,2015/4/20,7.0,,
GCA_001052995.1,farcinogenes,1802,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCA_001052995.1_AMRSEG0008,CTEF01000005.1,negative,146474-147358,100.0,93.9,,,,,2015/4/20,7.0,,
GCA_001052995.1,farcinogenes,1802,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,GCA_001052995.1_AMRSEG0009,CTEF01000005.1,positive,180857-182361,99.34,81.21,,,,,2015/4/20,7.0,,
GCA_001052995.1,farcinogenes,1802,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCA_001052995.1_AMRSEG0010,CTEF01000005.1,negative,420677-421269,99.83,84.01,,,,,2015/4/20,7.0,,
GCF_001021425.1,farcinogenes,1802,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,GCF_001021425.1_AMRSEG0005,NZ_LDPU01000001.1,negative,3943762-3945267,99.41,81.41,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary :sputum,United States of America,2015/6/8,82.0,,
GCF_001021425.1,farcinogenes,1802,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCF_001021425.1_AMRSEG0006,NZ_LDPU01000001.1,negative,5125610-5126841,97.22,82.56,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary :sputum,United States of America,2015/6/8,82.0,,
GCF_001021425.1,farcinogenes,1802,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCF_001021425.1_AMRSEG0007,NZ_LDPU01000001.1,negative,5290215-5291427,98.62,87.96,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary :sputum,United States of America,2015/6/8,82.0,,
GCF_001021425.1,farcinogenes,1802,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_001021425.1_AMRSEG0008,NZ_LDPU01000002.1,positive,110229-110560,96.23,90.96,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary :sputum,United States of America,2015/6/8,82.0,,
GCF_001077745.1,farcinogenes,1802,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_001077745.1_AMRSEG0001,NZ_LFOD01000001.1,negative,572666-572997,96.23,90.96,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary :sputum,United States of America,2015/7/14,82.0,,
GCF_001077745.1,farcinogenes,1802,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_001077745.1_AMRSEG0002,NZ_LFOD01000007.1,positive,119192-119878,100.0,85.59,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary :sputum,United States of America,2015/7/14,82.0,,
GCF_001077745.1,farcinogenes,1802,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCF_001077745.1_AMRSEG0003,NZ_LFOD01000010.1,negative,642-1526,100.0,93.67,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary :sputum,United States of America,2015/7/14,82.0,,
GCF_001077745.1,farcinogenes,1802,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCF_001077745.1_AMRSEG0004,NZ_LFOD01000015.1,negative,102306-102898,99.83,84.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary :sputum,United States of America,2015/7/14,82.0,,
GCF_001077745.1,farcinogenes,1802,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCF_001077745.1_AMRSEG0005,NZ_LFOD01000017.1,positive,4610-5822,98.62,87.96,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary :sputum,United States of America,2015/7/14,82.0,,
GCF_001077745.1,farcinogenes,1802,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCF_001077745.1_AMRSEG0006,NZ_LFOD01000029.1,negative,52695-53926,97.22,82.72,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary :sputum,United States of America,2015/7/14,82.0,,
GCF_001077745.1,farcinogenes,1802,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,GCF_001077745.1_AMRSEG0007,NZ_LFOD01000034.1,negative,41413-42918,99.41,81.41,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary :sputum,United States of America,2015/7/14,82.0,,
GCF_001077745.1,farcinogenes,1802,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_001077745.1_AMRSEG0008,NZ_LFOD01000056.1,negative,4124-7612,99.05,80.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary :sputum,United States of America,2015/7/14,82.0,,
GCF_900454115.1,farcinogenes,1802,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCF_900454115.1_AMRSEG0001,NZ_UGQQ01000001.1,negative,775872-777103,97.22,82.81,,,,,2018/8/1,85.0,,
GCF_900454115.1,farcinogenes,1802,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCF_900454115.1_AMRSEG0002,NZ_UGQQ01000001.1,negative,927740-928952,98.62,87.72,,,,,2018/8/1,85.0,,
GCF_900454115.1,farcinogenes,1802,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_900454115.1_AMRSEG0003,NZ_UGQQ01000001.1,negative,1850035-1850366,96.23,90.96,,,,,2018/8/1,85.0,,
GCF_900454115.1,farcinogenes,1802,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCF_900454115.1_AMRSEG0004,NZ_UGQQ01000001.1,negative,2859631-2860515,100.0,92.99,,,,,2018/8/1,85.0,,
GCF_900454115.1,farcinogenes,1802,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_900454115.1_AMRSEG0005,NZ_UGQQ01000002.1,negative,99474-100161,100.0,85.03,,,,,2018/8/1,85.0,,
GCF_900454115.1,farcinogenes,1802,Erm(39),ARO:3000602,antibiotic target alteration,Mycolicibacterium fortuitum,streptogramin antibiotic;streptogramin A antibiotic;macrolide antibiotic;lincosamide antibiotic;streptogramin B antibiotic,ErmD confers MLSb phenotype.,GCF_900454115.1_AMRSEG0006,NZ_UGQQ01000002.1,positive,269641-270381,99.87,85.17,,,,,2018/8/1,85.0,,
GCF_900454115.1,farcinogenes,1802,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_900454115.1_AMRSEG0007,NZ_UGQQ01000002.1,negative,621002-624490,99.05,80.86,,,,,2018/8/1,85.0,,
GCF_900454115.1,farcinogenes,1802,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,GCF_900454115.1_AMRSEG0008,NZ_UGQQ01000002.1,negative,748436-748862,98.84,82.67,,,,,2018/8/1,85.0,,
GCF_900454115.1,farcinogenes,1802,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCF_900454115.1_AMRSEG0009,NZ_UGQQ01000002.1,positive,1541873-1542466,100.0,85.02,,,,,2018/8/1,85.0,,
GCF_900454115.1,farcinogenes,1802,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,GCF_900454115.1_AMRSEG0010,NZ_UGQQ01000002.1,negative,2478531-2480036,99.41,81.54,,,,,2018/8/1,85.0,,