strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name
GCA_001050075.1,fortuitum,1766,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,GCA_001050075.1_AMRSEG0001,CVRX01000011.1,positive,123970-124399,99.54,80.7,,,,,2015/6/30,42.0,,
GCA_001050075.1,fortuitum,1766,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCA_001050075.1_AMRSEG0002,CVRX01000055.1,positive,80280-80966,100.0,84.57,,,,,2015/6/30,42.0,,
GCA_001050075.1,fortuitum,1766,APH(3'')-Ic,ARO:3002640,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,APH(3'')-Ic is a chromosomal-encoded aminoglycoside phosphotransferase in Mycolicibacterium fortuitum.,GCA_001050075.1_AMRSEG0003,CVRX01000222.1,positive,153512-154276,100.0,98.69,,,,,2015/6/30,42.0,,
GCA_001050075.1,fortuitum,1766,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCA_001050075.1_AMRSEG0004,CVRX01000274.1,positive,22309-23193,100.0,98.98,,,,,2015/6/30,42.0,,
GCA_001050075.1,fortuitum,1766,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCA_001050075.1_AMRSEG0005,CVRX01000282.1,positive,2021-5509,99.03,80.69,,,,,2015/6/30,42.0,,
GCA_001050075.1,fortuitum,1766,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCA_001050075.1_AMRSEG0006,CVRX01000288.1,negative,24520-24851,96.23,92.17,,,,,2015/6/30,42.0,,
GCA_001050075.1,fortuitum,1766,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCA_001050075.1_AMRSEG0007,CVRX01000294.1,negative,128026-128613,100.0,100.0,,,,,2015/6/30,42.0,,
GCA_001050075.1,fortuitum,1766,Erm(39),ARO:3000602,antibiotic target alteration,Mycolicibacterium fortuitum,streptogramin antibiotic;streptogramin A antibiotic;macrolide antibiotic;lincosamide antibiotic;streptogramin B antibiotic,ErmD confers MLSb phenotype.,GCA_001050075.1_AMRSEG0008,CVRX01000305.1,negative,70554-71294,100.0,100.0,,,,,2015/6/30,42.0,,
GCA_001050075.1,fortuitum,1766,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCA_001050075.1_AMRSEG0009,CVRX01000331.1,negative,8958-10187,100.0,99.27,,,,,2015/6/30,42.0,,
GCA_001475495.2,fortuitum,1766,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCA_001475495.2_AMRSEG0001,CP014258.1,negative,385937-386524,100.0,100.0,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :Cold abscess,United States of America,2016/2/8,698.0,,
GCA_001475495.2,fortuitum,1766,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCA_001475495.2_AMRSEG0002,CP014258.1,positive,1429573-1433063,99.03,80.65,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :Cold abscess,United States of America,2016/2/8,698.0,,
GCA_001475495.2,fortuitum,1766,Erm(39),ARO:3000602,antibiotic target alteration,Mycolicibacterium fortuitum,streptogramin antibiotic;streptogramin A antibiotic;macrolide antibiotic;lincosamide antibiotic;streptogramin B antibiotic,ErmD confers MLSb phenotype.,GCA_001475495.2_AMRSEG0003,CP014258.1,negative,1749215-1749955,100.0,100.0,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :Cold abscess,United States of America,2016/2/8,698.0,,
GCA_001475495.2,fortuitum,1766,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCA_001475495.2_AMRSEG0004,CP014258.1,positive,1908326-1909011,99.85,84.42,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :Cold abscess,United States of America,2016/2/8,698.0,,
GCA_001475495.2,fortuitum,1766,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCA_001475495.2_AMRSEG0005,CP014258.1,positive,2600433-2601317,100.0,99.21,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :Cold abscess,United States of America,2016/2/8,698.0,,
GCA_001475495.2,fortuitum,1766,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCA_001475495.2_AMRSEG0006,CP014258.1,positive,3637675-3638005,95.94,91.87,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :Cold abscess,United States of America,2016/2/8,698.0,,
GCA_001475495.2,fortuitum,1766,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCA_001475495.2_AMRSEG0007,CP014258.1,positive,4569123-4570353,100.0,99.19,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :Cold abscess,United States of America,2016/2/8,698.0,,
GCA_001475495.2,fortuitum,1766,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCA_001475495.2_AMRSEG0008,CP014258.1,positive,4743665-4744903,97.62,80.89,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :Cold abscess,United States of America,2016/2/8,698.0,,
GCA_001475495.2,fortuitum,1766,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,GCA_001475495.2_AMRSEG0009,CP014258.1,negative,5172675-5173104,99.54,80.7,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :Cold abscess,United States of America,2016/2/8,698.0,,
GCA_001475495.2,fortuitum,1766,APH(3'')-Ic,ARO:3002640,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,APH(3'')-Ic is a chromosomal-encoded aminoglycoside phosphotransferase in Mycolicibacterium fortuitum.,GCA_001475495.2_AMRSEG0010,CP014258.1,negative,5319316-5320085,100.0,98.05,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :Cold abscess,United States of America,2016/2/8,698.0,,
GCF_001307545.1,fortuitum,1766,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCF_001307545.1_AMRSEG0001,NZ_CP011269.1,negative,385852-386439,100.0,98.64,Environment,Environment: urban environment,Environment:Urban environment:rhizosphere soil from the California Institute of Technology Campus,United States of America,2015/10/7,71.0,,
GCF_001307545.1,fortuitum,1766,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_001307545.1_AMRSEG0002,NZ_CP011269.1,positive,1429126-1432614,99.03,80.55,Environment,Environment: urban environment,Environment:Urban environment:rhizosphere soil from the California Institute of Technology Campus,United States of America,2015/10/7,71.0,,
GCF_001307545.1,fortuitum,1766,Erm(39),ARO:3000602,antibiotic target alteration,Mycolicibacterium fortuitum,streptogramin antibiotic;streptogramin A antibiotic;macrolide antibiotic;lincosamide antibiotic;streptogramin B antibiotic,ErmD confers MLSb phenotype.,GCF_001307545.1_AMRSEG0003,NZ_CP011269.1,negative,1748717-1749457,100.0,99.19,Environment,Environment: urban environment,Environment:Urban environment:rhizosphere soil from the California Institute of Technology Campus,United States of America,2015/10/7,71.0,,
GCF_001307545.1,fortuitum,1766,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_001307545.1_AMRSEG0004,NZ_CP011269.1,positive,1907765-1908451,100.0,84.57,Environment,Environment: urban environment,Environment:Urban environment:rhizosphere soil from the California Institute of Technology Campus,United States of America,2015/10/7,71.0,,
GCF_001307545.1,fortuitum,1766,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCF_001307545.1_AMRSEG0005,NZ_CP011269.1,positive,2599615-2600499,100.0,97.63,Environment,Environment: urban environment,Environment:Urban environment:rhizosphere soil from the California Institute of Technology Campus,United States of America,2015/10/7,71.0,,
GCF_900453945.1,fortuitum,1766,Erm(39),ARO:3000602,antibiotic target alteration,Mycolicibacterium fortuitum,streptogramin antibiotic;streptogramin A antibiotic;macrolide antibiotic;lincosamide antibiotic;streptogramin B antibiotic,ErmD confers MLSb phenotype.,GCF_900453945.1_AMRSEG0001,NZ_UGQY01000001.1,negative,198913-199653,100.0,98.92,,,,,2018/8/1,,,
GCF_900453945.1,fortuitum,1766,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_900453945.1_AMRSEG0002,NZ_UGQY01000001.1,positive,361953-362639,100.0,84.57,,,,,2018/8/1,,,
GCF_900453945.1,fortuitum,1766,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCF_900453945.1_AMRSEG0003,NZ_UGQY01000001.1,positive,1028803-1029687,100.0,98.53,,,,,2018/8/1,,,
GCF_900453945.1,fortuitum,1766,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_900453945.1_AMRSEG0004,NZ_UGQY01000001.1,positive,2106217-2106548,96.23,92.17,,,,,2018/8/1,,,
GCF_900453945.1,fortuitum,1766,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCF_900453945.1_AMRSEG0005,NZ_UGQY01000003.1,positive,504028-505257,100.0,99.19,,,,,2018/8/1,,,
GCF_900453945.1,fortuitum,1766,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCF_900453945.1_AMRSEG0006,NZ_UGQY01000003.1,positive,664047-665283,97.62,80.69,,,,,2018/8/1,,,
GCF_900453945.1,fortuitum,1766,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,GCF_900453945.1_AMRSEG0007,NZ_UGQY01000003.1,negative,1088017-1088446,99.31,81.9,,,,,2018/8/1,,,
GCF_900453945.1,fortuitum,1766,APH(3'')-Ic,ARO:3002640,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,APH(3'')-Ic is a chromosomal-encoded aminoglycoside phosphotransferase in Mycolicibacterium fortuitum.,GCF_900453945.1_AMRSEG0008,NZ_UGQY01000003.1,negative,1245689-1246453,100.0,99.61,,,,,2018/8/1,,,
GCF_900453945.1,fortuitum,1766,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCF_900453945.1_AMRSEG0009,NZ_UGQY01000004.1,negative,1208696-1209283,100.0,100.0,,,,,2018/8/1,,,
GCF_900453945.1,fortuitum,1766,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_900453945.1_AMRSEG0010,NZ_UGQY01000004.1,positive,2336108-2339596,99.03,80.58,,,,,2018/8/1,,,