strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name
SRR6046399,lentiflavum,141349,mfpA,ARO:3003035,antibiotic target protection,Mycobacterium tuberculosis H37Rv,fluoroquinolone antibiotic,mfpA is a qnr homolog and a pentapeptide repeat protein that confers resistance to fluoroquinolones in Mycolicibacterium smegmatis.,SRR6046399_AMRSEG0001,NODE_132_length_11812_cov_11.803132,negative,4659-5190,96.38,80.83,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,646.0,,
SRR6046399,lentiflavum,141349,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR6046399_AMRSEG0002,NODE_137_length_11378_cov_10.648255,positive,4161-5765,100.0,83.99,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,646.0,,
SRR6046399,lentiflavum,141349,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR6046399_AMRSEG0003,NODE_13_length_95475_cov_14.102608,negative,54878-58263,96.65,80.76,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,646.0,,
SRR6046399,lentiflavum,141349,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR6046399_AMRSEG0004,NODE_17_length_84986_cov_12.880209,negative,14681-15012,96.23,86.45,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,646.0,,
SRR6046399,lentiflavum,141349,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR6046399_AMRSEG0005,NODE_5_length_109022_cov_12.337200,positive,77397-78083,100.0,90.39,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,646.0,,
SRR7800693,lentiflavum,141349,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR7800693_AMRSEG0001,NODE_1_length_532677_cov_57.513015,positive,336219-339604,96.65,80.76,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,United States of America,2015/1/1,646.0,,
SRR7800693,lentiflavum,141349,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR7800693_AMRSEG0002,NODE_3_length_464875_cov_58.187097,negative,20979-21310,96.23,86.45,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,United States of America,2015/1/1,646.0,,
SRR7800693,lentiflavum,141349,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR7800693_AMRSEG0003,NODE_6_length_231028_cov_54.253493,positive,64450-66054,100.0,83.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,United States of America,2015/1/1,646.0,,
SRR7800693,lentiflavum,141349,mfpA,ARO:3003035,antibiotic target protection,Mycobacterium tuberculosis H37Rv,fluoroquinolone antibiotic,mfpA is a qnr homolog and a pentapeptide repeat protein that confers resistance to fluoroquinolones in Mycolicibacterium smegmatis.,SRR7800693_AMRSEG0004,NODE_70_length_11785_cov_53.996417,positive,6628-7159,96.38,80.83,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,United States of America,2015/1/1,646.0,,
SRR7800693,lentiflavum,141349,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR7800693_AMRSEG0005,NODE_7_length_210544_cov_57.517733,negative,30934-31620,100.0,90.39,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,United States of America,2015/1/1,646.0,,