strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name
ERR459752,llatzerense,280871,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,ERR459752_AMRSEG0001,NODE_12_length_157973_cov_19.521139,positive,107542-107873,96.23,87.05,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/3/18,,,
ERR459752,llatzerense,280871,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,ERR459752_AMRSEG0002,NODE_26_length_77932_cov_20.504771,positive,3949-4635,100.0,86.46,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/3/18,,,
ERR459752,llatzerense,280871,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",ERR459752_AMRSEG0003,NODE_6_length_259153_cov_20.860554,positive,57353-60822,98.68,80.71,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/3/18,,,
GCF_001865165.1,llatzerense,280871,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_001865165.1_AMRSEG0001,NZ_LIPZ01000004.1,negative,31761-35230,98.68,80.77,Environment,Environment: urban environment,Environment:Urban environment:drinking water network,France,2016/11/2,549.0,,
GCF_001865165.1,llatzerense,280871,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_001865165.1_AMRSEG0002,NZ_LIPZ01000009.1,negative,16809-17140,96.23,87.35,Environment,Environment: urban environment,Environment:Urban environment:drinking water network,France,2016/11/2,549.0,,
GCF_001865165.1,llatzerense,280871,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_001865165.1_AMRSEG0003,NZ_LIPZ01000019.1,positive,3327-4013,100.0,86.61,Environment,Environment: urban environment,Environment:Urban environment:drinking water network,France,2016/11/2,549.0,,
SRR1587779,llatzerense,280871,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR1587779_AMRSEG0001,NODE_13_length_128184_cov_38.534058,positive,111488-111819,96.23,87.65,,,,,,185.0,,
SRR1587779,llatzerense,280871,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR1587779_AMRSEG0002,NODE_2_length_561823_cov_46.450443,negative,238597-242066,98.68,80.71,,,,,,185.0,,
SRR1587779,llatzerense,280871,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR1587779_AMRSEG0003,NODE_7_length_251554_cov_43.889352,negative,157371-158057,100.0,86.61,,,,,,185.0,,