strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name
GCA_000524035.1,marinum,1781,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCA_000524035.1_AMRSEG0001,JAOL01000079.1,positive,6767-10184,97.11,80.69,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :skin,United States of America,2014/1/27,663.0,,
GCA_000524035.1,marinum,1781,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,GCA_000524035.1_AMRSEG0002,JAOL01000087.1,negative,31557-32102,99.82,82.45,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :skin,United States of America,2014/1/27,663.0,,
GCA_000524035.1,marinum,1781,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,GCA_000524035.1_AMRSEG0003,JAOL01000107.1,positive,15587-17179,99.94,84.57,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :skin,United States of America,2014/1/27,663.0,,
GCA_000524035.1,marinum,1781,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCA_000524035.1_AMRSEG0004,JAOL01000114.1,positive,23914-24228,91.3,84.13,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :skin,United States of America,2014/1/27,663.0,,
GCA_000524035.1,marinum,1781,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCA_000524035.1_AMRSEG0005,JAOL01000121.1,negative,14412-15098,100.0,90.39,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :skin,United States of America,2014/1/27,663.0,,
GCF_001870585.1,marinum,1781,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_001870585.1_AMRSEG0001,NZ_MDUB01000287.1,negative,71889-72575,100.0,90.25,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :skin lesion,Benin,2016/11/7,560.0,,
GCF_001870585.1,marinum,1781,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,GCF_001870585.1_AMRSEG0002,NZ_MDUB01000333.1,positive,12684-14276,99.94,84.5,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :skin lesion,Benin,2016/11/7,560.0,,
GCF_001870585.1,marinum,1781,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,GCF_001870585.1_AMRSEG0003,NZ_MDUB01000391.1,negative,9089-9634,99.82,82.27,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :skin lesion,Benin,2016/11/7,560.0,,
GCF_001870585.1,marinum,1781,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_001870585.1_AMRSEG0004,NZ_MDUB01000427.1,positive,1771-2085,91.3,84.13,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :skin lesion,Benin,2016/11/7,560.0,,
GCF_001870585.1,marinum,1781,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_001870585.1_AMRSEG0005,NZ_MDUB01000469.1,positive,73673-77091,97.13,80.72,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :skin lesion,Benin,2016/11/7,560.0,,
GCF_002911505.1,marinum,1781,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_002911505.1_AMRSEG0001,NZ_PQBM01000005.1,positive,38967-42385,97.13,80.83,,,,,2018/2/1,245.0,,
GCF_002911505.1,marinum,1781,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_002911505.1_AMRSEG0002,NZ_PQBM01000015.1,positive,31181-31495,91.3,84.44,,,,,2018/2/1,245.0,,
GCF_002911505.1,marinum,1781,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_002911505.1_AMRSEG0003,NZ_PQBM01000016.1,positive,34943-35629,100.0,90.54,,,,,2018/2/1,245.0,,
GCF_002911505.1,marinum,1781,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,GCF_002911505.1_AMRSEG0004,NZ_PQBM01000032.1,positive,18539-19084,99.82,82.63,,,,,2018/2/1,245.0,,
GCF_002911505.1,marinum,1781,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,GCF_002911505.1_AMRSEG0005,NZ_PQBM01000033.1,negative,10511-12103,99.94,84.63,,,,,2018/2/1,245.0,,
GCF_002911515.1,marinum,1781,APH(7'')-Ia,ARO:3002661,antibiotic inactivation,Streptomyces hygroscopicus,aminoglycoside antibiotic,APH(7'')-Ia is a chromosomal-encoded aminoglycoside phosphotransferase in S. hygroscopicus.,GCF_002911515.1_AMRSEG0001,NZ_PQBL01000001.1,negative,63380-64378,100.0,99.8,,,,,2018/2/1,51.0,,
GCF_002911515.1,marinum,1781,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_002911515.1_AMRSEG0002,NZ_PQBL01000001.1,negative,201896-205314,97.13,80.83,,,,,2018/2/1,51.0,,
GCF_002911515.1,marinum,1781,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,GCF_002911515.1_AMRSEG0003,NZ_PQBL01000006.1,negative,93483-95073,99.81,84.74,,,,,2018/2/1,51.0,,
GCF_002911515.1,marinum,1781,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_002911515.1_AMRSEG0004,NZ_PQBL01000015.1,negative,44459-44773,91.3,84.76,,,,,2018/2/1,51.0,,
GCF_002911515.1,marinum,1781,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,GCF_002911515.1_AMRSEG0005,NZ_PQBL01000016.1,negative,53488-54033,99.82,82.63,,,,,2018/2/1,51.0,,
GCF_002911515.1,marinum,1781,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_002911515.1_AMRSEG0006,NZ_PQBL01000025.1,positive,4980-5666,100.0,90.54,,,,,2018/2/1,51.0,,
GCF_002911575.1,marinum,1781,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_002911575.1_AMRSEG0001,NZ_PQBN01000001.1,negative,86156-86842,100.0,90.54,,,,,2018/2/1,22.0,,
GCF_002911575.1,marinum,1781,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_002911575.1_AMRSEG0002,NZ_PQBN01000003.1,positive,69775-70089,91.3,84.76,,,,,2018/2/1,22.0,,
GCF_002911575.1,marinum,1781,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,GCF_002911575.1_AMRSEG0003,NZ_PQBN01000035.1,positive,17610-18155,99.82,82.27,,,,,2018/2/1,22.0,,
GCF_002911575.1,marinum,1781,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_002911575.1_AMRSEG0004,NZ_PQBN01000036.1,negative,41314-44732,97.13,80.86,,,,,2018/2/1,22.0,,
GCF_002911575.1,marinum,1781,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,GCF_002911575.1_AMRSEG0005,NZ_PQBN01000045.1,negative,2548-4140,99.94,84.63,,,,,2018/2/1,22.0,,
GCF_002911595.1,marinum,1781,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_002911595.1_AMRSEG0001,NZ_PQBO01000009.1,positive,25158-25472,91.3,84.76,,,,,2018/2/1,51.0,,
GCF_002911595.1,marinum,1781,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_002911595.1_AMRSEG0002,NZ_PQBO01000013.1,negative,60401-61087,100.0,90.54,,,,,2018/2/1,51.0,,
GCF_002911595.1,marinum,1781,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,GCF_002911595.1_AMRSEG0003,NZ_PQBO01000023.1,negative,33245-33790,99.82,82.63,,,,,2018/2/1,51.0,,
GCF_002911595.1,marinum,1781,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_002911595.1_AMRSEG0004,NZ_PQBO01000026.1,negative,41231-44649,97.13,80.83,,,,,2018/2/1,51.0,,
GCF_002911595.1,marinum,1781,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,GCF_002911595.1_AMRSEG0005,NZ_PQBO01000032.1,negative,2440-4030,99.81,84.74,,,,,2018/2/1,51.0,,
SRR9949207,marinum,1781,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR9949207_AMRSEG0003,NODE_1_length_550210_cov_253.470216,negative,509773-511365,99.94,84.63,,,,China,2019/1/29,22.0,,
SRR9949207,marinum,1781,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR9949207_AMRSEG0004,NODE_4_length_387047_cov_276.043811,positive,337519-338064,99.82,82.27,,,,China,2019/1/29,22.0,,
SRR9949207,marinum,1781,APH(3')-Ia,ARO:3002641,antibiotic inactivation,Serratia marcescens,aminoglycoside antibiotic,"APH(3')-Ia is a transposon-encoded aminoglycoside phosphotransferase in E. coli and S. enterica. It is identical at the protein sequence to APH(3')-Ic, an aminoglycoside phosphotransferase encoded by plasmids, transposons and genomic islands in K. pneumoniae, A. baumannii, S. marcescens, Corynebacterium spp., Photobacterium spp. and Citrobacter spp.",SRR9949207_AMRSEG0005,NODE_55_length_10556_cov_329.069380,positive,4186-4999,99.75,99.14,,,,China,2019/1/29,22.0,,
SRR9949207,marinum,1781,APH(7'')-Ia,ARO:3002661,antibiotic inactivation,Streptomyces hygroscopicus,aminoglycoside antibiotic,APH(7'')-Ia is a chromosomal-encoded aminoglycoside phosphotransferase in S. hygroscopicus.,SRR9949207_AMRSEG0006,NODE_78_length_2634_cov_5096.137690,positive,894-1892,100.0,99.7,,,,China,2019/1/29,22.0,,
SRR9949207,marinum,1781,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR9949207_AMRSEG0007,NODE_7_length_260203_cov_243.085408,positive,9306-12724,97.13,80.86,,,,China,2019/1/29,22.0,,
SRR9949208,marinum,1781,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR9949208_AMRSEG0001,NODE_13_length_200655_cov_165.003485,negative,86035-86721,100.0,90.54,,,,China,2019/1/29,22.0,,
SRR9949208,marinum,1781,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR9949208_AMRSEG0002,NODE_15_length_155059_cov_169.583105,negative,85694-86008,91.3,84.76,,,,China,2019/1/29,22.0,,
SRR9949208,marinum,1781,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR9949208_AMRSEG0003,NODE_1_length_550455_cov_165.577056,negative,510018-511610,99.94,84.63,,,,China,2019/1/29,22.0,,
SRR9949208,marinum,1781,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR9949208_AMRSEG0004,NODE_4_length_387147_cov_176.024147,positive,337619-338164,99.82,82.27,,,,China,2019/1/29,22.0,,
SRR9949208,marinum,1781,APH(3')-Ia,ARO:3002641,antibiotic inactivation,Serratia marcescens,aminoglycoside antibiotic,"APH(3')-Ia is a transposon-encoded aminoglycoside phosphotransferase in E. coli and S. enterica. It is identical at the protein sequence to APH(3')-Ic, an aminoglycoside phosphotransferase encoded by plasmids, transposons and genomic islands in K. pneumoniae, A. baumannii, S. marcescens, Corynebacterium spp., Photobacterium spp. and Citrobacter spp.",SRR9949208_AMRSEG0005,NODE_55_length_10556_cov_168.358429,positive,4186-4999,99.75,99.14,,,,China,2019/1/29,22.0,,
SRR9949208,marinum,1781,APH(7'')-Ia,ARO:3002661,antibiotic inactivation,Streptomyces hygroscopicus,aminoglycoside antibiotic,APH(7'')-Ia is a chromosomal-encoded aminoglycoside phosphotransferase in S. hygroscopicus.,SRR9949208_AMRSEG0006,NODE_77_length_2634_cov_3267.507585,positive,894-1892,100.0,99.7,,,,China,2019/1/29,22.0,,
SRR9949208,marinum,1781,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR9949208_AMRSEG0007,NODE_7_length_260203_cov_159.380257,positive,9306-12724,97.13,80.86,,,,China,2019/1/29,22.0,,
SRR9949209,marinum,1781,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR9949209_AMRSEG0001,NODE_12_length_200655_cov_188.616690,negative,86035-86721,100.0,90.54,,,,China,2019/1/29,22.0,,
SRR9949209,marinum,1781,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR9949209_AMRSEG0002,NODE_14_length_155059_cov_186.799472,negative,85694-86008,91.3,84.76,,,,China,2019/1/29,22.0,,
SRR9949209,marinum,1781,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR9949209_AMRSEG0003,NODE_1_length_550486_cov_182.772813,positive,38846-40438,99.94,84.63,,,,China,2019/1/29,22.0,,
SRR9949209,marinum,1781,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR9949209_AMRSEG0004,NODE_4_length_387047_cov_191.008450,negative,48984-49529,99.82,82.27,,,,China,2019/1/29,22.0,,
SRR9949209,marinum,1781,APH(3')-Ia,ARO:3002641,antibiotic inactivation,Serratia marcescens,aminoglycoside antibiotic,"APH(3')-Ia is a transposon-encoded aminoglycoside phosphotransferase in E. coli and S. enterica. It is identical at the protein sequence to APH(3')-Ic, an aminoglycoside phosphotransferase encoded by plasmids, transposons and genomic islands in K. pneumoniae, A. baumannii, S. marcescens, Corynebacterium spp., Photobacterium spp. and Citrobacter spp.",SRR9949209_AMRSEG0005,NODE_56_length_10555_cov_351.227316,positive,4185-4998,99.75,99.14,,,,China,2019/1/29,22.0,,
SRR9949209,marinum,1781,APH(7'')-Ia,ARO:3002661,antibiotic inactivation,Streptomyces hygroscopicus,aminoglycoside antibiotic,APH(7'')-Ia is a chromosomal-encoded aminoglycoside phosphotransferase in S. hygroscopicus.,SRR9949209_AMRSEG0006,NODE_78_length_2634_cov_2130.617270,positive,894-1892,100.0,99.7,,,,China,2019/1/29,22.0,,
SRR9949209,marinum,1781,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR9949209_AMRSEG0007,NODE_7_length_260203_cov_184.922338,negative,247480-250898,97.13,80.86,,,,China,2019/1/29,22.0,,
SRR9949210,marinum,1781,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR9949210_AMRSEG0001,NODE_13_length_200655_cov_265.650415,positive,113935-114621,100.0,90.54,,,,China,2019/1/29,22.0,,
SRR9949210,marinum,1781,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR9949210_AMRSEG0002,NODE_15_length_155059_cov_272.572647,negative,85694-86008,91.3,84.76,,,,China,2019/1/29,22.0,,
SRR9949210,marinum,1781,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR9949210_AMRSEG0003,NODE_1_length_550486_cov_265.414414,positive,38846-40438,99.94,84.63,,,,China,2019/1/29,22.0,,
SRR9949210,marinum,1781,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR9949210_AMRSEG0004,NODE_4_length_386947_cov_276.499979,negative,48984-49529,99.82,82.27,,,,China,2019/1/29,22.0,,
SRR9949210,marinum,1781,APH(3')-Ia,ARO:3002641,antibiotic inactivation,Serratia marcescens,aminoglycoside antibiotic,"APH(3')-Ia is a transposon-encoded aminoglycoside phosphotransferase in E. coli and S. enterica. It is identical at the protein sequence to APH(3')-Ic, an aminoglycoside phosphotransferase encoded by plasmids, transposons and genomic islands in K. pneumoniae, A. baumannii, S. marcescens, Corynebacterium spp., Photobacterium spp. and Citrobacter spp.",SRR9949210_AMRSEG0005,NODE_55_length_10556_cov_200.082722,positive,4186-4999,99.75,99.14,,,,China,2019/1/29,22.0,,
SRR9949210,marinum,1781,APH(7'')-Ia,ARO:3002661,antibiotic inactivation,Streptomyces hygroscopicus,aminoglycoside antibiotic,APH(7'')-Ia is a chromosomal-encoded aminoglycoside phosphotransferase in S. hygroscopicus.,SRR9949210_AMRSEG0006,NODE_75_length_2634_cov_3827.479191,negative,743-1741,100.0,99.7,,,,China,2019/1/29,22.0,,
SRR9949210,marinum,1781,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR9949210_AMRSEG0007,NODE_7_length_260203_cov_259.370704,positive,9306-12724,97.13,80.86,,,,China,2019/1/29,22.0,,
SRR9949211,marinum,1781,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR9949211_AMRSEG0001,NODE_13_length_200655_cov_177.482392,positive,113935-114621,100.0,90.54,,,,China,2019/1/29,22.0,,
SRR9949211,marinum,1781,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR9949211_AMRSEG0002,NODE_15_length_155059_cov_173.948721,negative,85694-86008,91.3,84.76,,,,China,2019/1/29,22.0,,
SRR9949211,marinum,1781,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR9949211_AMRSEG0003,NODE_1_length_550740_cov_171.943431,positive,38846-40438,99.94,84.63,,,,China,2019/1/29,22.0,,
SRR9949211,marinum,1781,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR9949211_AMRSEG0004,NODE_4_length_387047_cov_182.442876,negative,48984-49529,99.82,82.27,,,,China,2019/1/29,22.0,,
SRR9949211,marinum,1781,APH(3')-Ia,ARO:3002641,antibiotic inactivation,Serratia marcescens,aminoglycoside antibiotic,"APH(3')-Ia is a transposon-encoded aminoglycoside phosphotransferase in E. coli and S. enterica. It is identical at the protein sequence to APH(3')-Ic, an aminoglycoside phosphotransferase encoded by plasmids, transposons and genomic islands in K. pneumoniae, A. baumannii, S. marcescens, Corynebacterium spp., Photobacterium spp. and Citrobacter spp.",SRR9949211_AMRSEG0005,NODE_52_length_10556_cov_499.858096,positive,4186-4999,99.75,99.14,,,,China,2019/1/29,22.0,,
SRR9949211,marinum,1781,APH(7'')-Ia,ARO:3002661,antibiotic inactivation,Streptomyces hygroscopicus,aminoglycoside antibiotic,APH(7'')-Ia is a chromosomal-encoded aminoglycoside phosphotransferase in S. hygroscopicus.,SRR9949211_AMRSEG0006,NODE_77_length_2634_cov_2012.515753,positive,894-1892,100.0,99.7,,,,China,2019/1/29,22.0,,
SRR9949211,marinum,1781,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR9949211_AMRSEG0007,NODE_7_length_260203_cov_177.360629,positive,9306-12724,97.13,80.86,,,,China,2019/1/29,22.0,,
SRR9949212,marinum,1781,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR9949212_AMRSEG0001,NODE_12_length_200655_cov_184.626949,positive,113935-114621,100.0,90.54,,,,China,2019/1/29,22.0,,
SRR9949212,marinum,1781,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR9949212_AMRSEG0002,NODE_14_length_155059_cov_183.906681,negative,85694-86008,91.3,84.76,,,,China,2019/1/29,22.0,,
SRR9949212,marinum,1781,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR9949212_AMRSEG0003,NODE_1_length_550586_cov_181.532063,negative,510149-511741,99.94,84.63,,,,China,2019/1/29,22.0,,
SRR9949212,marinum,1781,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR9949212_AMRSEG0004,NODE_4_length_387047_cov_194.900236,positive,337519-338064,99.82,82.27,,,,China,2019/1/29,22.0,,
SRR9949212,marinum,1781,APH(3')-Ia,ARO:3002641,antibiotic inactivation,Serratia marcescens,aminoglycoside antibiotic,"APH(3')-Ia is a transposon-encoded aminoglycoside phosphotransferase in E. coli and S. enterica. It is identical at the protein sequence to APH(3')-Ic, an aminoglycoside phosphotransferase encoded by plasmids, transposons and genomic islands in K. pneumoniae, A. baumannii, S. marcescens, Corynebacterium spp., Photobacterium spp. and Citrobacter spp.",SRR9949212_AMRSEG0005,NODE_53_length_10556_cov_190.843991,negative,5558-6371,99.75,99.14,,,,China,2019/1/29,22.0,,
SRR9949212,marinum,1781,APH(7'')-Ia,ARO:3002661,antibiotic inactivation,Streptomyces hygroscopicus,aminoglycoside antibiotic,APH(7'')-Ia is a chromosomal-encoded aminoglycoside phosphotransferase in S. hygroscopicus.,SRR9949212_AMRSEG0006,NODE_77_length_2634_cov_2674.989887,positive,894-1892,100.0,99.7,,,,China,2019/1/29,22.0,,
SRR9949212,marinum,1781,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR9949212_AMRSEG0007,NODE_7_length_260203_cov_181.192700,positive,9306-12724,97.13,80.86,,,,China,2019/1/29,22.0,,