strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name
GCF_001044245.1,obuense,1807,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCF_001044245.1_AMRSEG0001,NZ_JYNU01000003.1,negative,105011-106188,95.53,80.44,,,,,2015/7/1,230.0,,
GCF_001044245.1,obuense,1807,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_001044245.1_AMRSEG0002,NZ_JYNU01000005.1,negative,76414-77100,100.0,86.9,,,,,2015/7/1,230.0,,
GCF_001044245.1,obuense,1807,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_001044245.1_AMRSEG0003,NZ_JYNU01000008.1,negative,154117-154437,93.04,89.1,,,,,2015/7/1,230.0,,
GCF_001044245.1,obuense,1807,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_001044245.1_AMRSEG0004,NZ_JYNU01000057.1,negative,279998-283384,96.7,81.38,,,,,2015/7/1,230.0,,
SRR8483014,obuense,1807,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR8483014_AMRSEG0001,NODE_1_length_699070_cov_102.669319,positive,190404-190724,93.04,89.41,,,,Portugal,2017/9/1,864.0,,
SRR8483014,obuense,1807,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR8483014_AMRSEG0002,NODE_2_length_525540_cov_108.153346,positive,293181-293867,100.0,86.9,,,,Portugal,2017/9/1,864.0,,
SRR8483014,obuense,1807,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR8483014_AMRSEG0003,NODE_3_length_429173_cov_105.943378,positive,89608-90785,95.53,80.36,,,,Portugal,2017/9/1,864.0,,
SRR8483014,obuense,1807,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR8483014_AMRSEG0004,NODE_4_length_424817_cov_104.005935,positive,272628-276014,96.7,81.41,,,,Portugal,2017/9/1,864.0,,