strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name ERR337822,peregrinum,43304,APH(3'')-Ic,ARO:3002640,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,APH(3'')-Ic is a chromosomal-encoded aminoglycoside phosphotransferase in Mycolicibacterium fortuitum.,ERR337822_AMRSEG0001,NODE_15_length_161216_cov_20.199382,negative,24726-25490,100.0,80.78,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/9/3,184.0,, ERR337822,peregrinum,43304,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,ERR337822_AMRSEG0002,NODE_24_length_107295_cov_20.575034,negative,77918-78257,98.55,90.0,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/9/3,184.0,, ERR337822,peregrinum,43304,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",ERR337822_AMRSEG0003,NODE_25_length_103404_cov_20.524022,negative,96914-98125,98.54,87.87,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/9/3,184.0,, ERR337822,peregrinum,43304,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,ERR337822_AMRSEG0004,NODE_30_length_82724_cov_20.940843,positive,35201-35791,100.0,86.63,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/9/3,184.0,, ERR337822,peregrinum,43304,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,ERR337822_AMRSEG0005,NODE_3_length_322621_cov_20.734339,positive,85325-85754,99.54,80.93,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/9/3,184.0,, ERR337822,peregrinum,43304,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",ERR337822_AMRSEG0006,NODE_3_length_322621_cov_20.734339,positive,205946-209422,98.71,80.21,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/9/3,184.0,, ERR337822,peregrinum,43304,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,ERR337822_AMRSEG0007,NODE_40_length_39156_cov_21.070601,positive,16852-17736,100.0,84.75,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/9/3,184.0,, ERR337822,peregrinum,43304,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,ERR337822_AMRSEG0008,NODE_42_length_38202_cov_20.287711,negative,5687-6923,97.62,83.2,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/9/3,184.0,, ERR337822,peregrinum,43304,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,ERR337822_AMRSEG0009,NODE_4_length_299908_cov_20.362397,positive,93934-94620,100.0,84.28,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/9/3,184.0,, ERR369261,peregrinum,43304,APH(3'')-Ic,ARO:3002640,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,APH(3'')-Ic is a chromosomal-encoded aminoglycoside phosphotransferase in Mycolicibacterium fortuitum.,ERR369261_AMRSEG0001,NODE_16_length_161216_cov_18.242279,negative,24726-25490,100.0,80.78,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/11/18,184.0,, ERR369261,peregrinum,43304,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,ERR369261_AMRSEG0002,NODE_23_length_107295_cov_18.486245,negative,77918-78257,98.55,90.0,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/11/18,184.0,, ERR369261,peregrinum,43304,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",ERR369261_AMRSEG0003,NODE_24_length_103404_cov_18.551630,negative,96914-98125,98.54,87.87,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/11/18,184.0,, ERR369261,peregrinum,43304,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,ERR369261_AMRSEG0004,NODE_28_length_82724_cov_18.142498,negative,46934-47524,100.0,86.63,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/11/18,184.0,, ERR369261,peregrinum,43304,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,ERR369261_AMRSEG0005,NODE_38_length_39156_cov_18.300949,positive,16852-17736,100.0,84.75,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/11/18,184.0,, ERR369261,peregrinum,43304,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,ERR369261_AMRSEG0006,NODE_40_length_38205_cov_18.353364,positive,31280-32516,97.62,83.2,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/11/18,184.0,, ERR369261,peregrinum,43304,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",ERR369261_AMRSEG0007,NODE_4_length_322621_cov_18.291414,negative,113200-116676,98.71,80.21,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/11/18,184.0,, ERR369261,peregrinum,43304,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,ERR369261_AMRSEG0008,NODE_4_length_322621_cov_18.291414,negative,236868-237297,99.54,80.93,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/11/18,184.0,, ERR369261,peregrinum,43304,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,ERR369261_AMRSEG0009,NODE_5_length_299908_cov_18.396371,negative,205289-205975,100.0,84.28,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2013/11/18,184.0,, SRR13785997,peregrinum,43304,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR13785997_AMRSEG0001,NODE_11_length_234617_cov_32.385779,positive,181772-185257,98.97,80.2,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2012/1/22,,, SRR13785997,peregrinum,43304,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR13785997_AMRSEG0002,NODE_18_length_165856_cov_32.852358,positive,19099-20335,98.62,86.74,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2012/1/22,,, SRR13785997,peregrinum,43304,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR13785997_AMRSEG0003,NODE_1_length_750604_cov_32.749389,positive,438321-439007,100.0,84.28,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2012/1/22,,, SRR13785997,peregrinum,43304,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR13785997_AMRSEG0004,NODE_2_length_510777_cov_33.202005,negative,420151-420490,98.55,90.0,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2012/1/22,,, SRR13785997,peregrinum,43304,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR13785997_AMRSEG0005,NODE_31_length_47924_cov_33.286559,positive,8842-10078,97.62,82.23,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2012/1/22,,, SRR13785997,peregrinum,43304,APH(3'')-Ic,ARO:3002640,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,APH(3'')-Ic is a chromosomal-encoded aminoglycoside phosphotransferase in Mycolicibacterium fortuitum.,SRR13785997_AMRSEG0006,NODE_34_length_30200_cov_33.348940,negative,20829-21593,100.0,80.92,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2012/1/22,,, SRR13785997,peregrinum,43304,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR13785997_AMRSEG0007,NODE_3_length_421181_cov_32.401332,negative,397475-398359,100.0,84.86,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2012/1/22,,, SRR13785997,peregrinum,43304,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR13785997_AMRSEG0008,NODE_4_length_409402_cov_32.533033,positive,317373-317954,98.47,87.8,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2012/1/22,,, SRR13785997,peregrinum,43304,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR13785997_AMRSEG0009,NODE_6_length_309189_cov_32.555573,positive,287214-287917,99.72,81.84,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2012/1/22,,, SRR6046339,peregrinum,43304,mel,ARO:3000616,antibiotic target protection,Streptococcus pyogenes,streptogramin antibiotic;macrolide antibiotic,"Mel, a homolog of MsrA, is an ABC-F subfamily protein associated with macrolide resistance. It is expressed on the same operon as mefA and mefE, both MFS-type efflux proteins that confer macrolide resistance.",SRR6046339_AMRSEG0001,NODE_185_length_2868_cov_4.756150,negative,1659-2868,99.34,89.75,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,184.0,, SRR6046339,peregrinum,43304,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR6046339_AMRSEG0002,NODE_18_length_94885_cov_15.695725,negative,62548-63784,97.7,82.86,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,184.0,, SRR6046339,peregrinum,43304,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR6046339_AMRSEG0003,NODE_1_length_273345_cov_14.285807,negative,179879-180218,98.55,89.71,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,184.0,, SRR6046339,peregrinum,43304,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR6046339_AMRSEG0004,NODE_28_length_79810_cov_15.559971,negative,19956-21167,98.54,87.95,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,184.0,, SRR6046339,peregrinum,43304,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR6046339_AMRSEG0005,NODE_2_length_234309_cov_15.243193,positive,164930-168406,98.71,80.21,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,184.0,, SRR6046339,peregrinum,43304,APH(3'')-Ic,ARO:3002640,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,APH(3'')-Ic is a chromosomal-encoded aminoglycoside phosphotransferase in Mycolicibacterium fortuitum.,SRR6046339_AMRSEG0006,NODE_4_length_141724_cov_15.942955,positive,69004-69768,100.0,81.05,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,184.0,, SRR6046339,peregrinum,43304,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR6046339_AMRSEG0007,NODE_84_length_28507_cov_14.408346,negative,26179-26865,100.0,84.28,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,184.0,, SRR6046339,peregrinum,43304,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR6046339_AMRSEG0008,NODE_8_length_123190_cov_16.974490,negative,46920-47510,100.0,85.79,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,184.0,, SRR6046339,peregrinum,43304,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR6046339_AMRSEG0009,NODE_94_length_24259_cov_15.069764,positive,21963-22847,100.0,84.75,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,184.0,, SRR6046344,peregrinum,43304,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,SRR6046344_AMRSEG0001,NODE_1_length_224460_cov_22.184909,negative,147098-148334,97.62,82.31,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,,, SRR6046344,peregrinum,43304,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,SRR6046344_AMRSEG0002,NODE_35_length_56646_cov_22.351537,positive,22733-23617,100.0,85.31,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,,, SRR6046344,peregrinum,43304,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",SRR6046344_AMRSEG0003,NODE_47_length_48804_cov_20.482920,negative,42548-43784,98.62,86.18,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,,, SRR6046344,peregrinum,43304,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR6046344_AMRSEG0004,NODE_4_length_140077_cov_19.674747,negative,96943-97282,98.55,89.71,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,,, SRR6046344,peregrinum,43304,APH(3'')-Ic,ARO:3002640,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,APH(3'')-Ic is a chromosomal-encoded aminoglycoside phosphotransferase in Mycolicibacterium fortuitum.,SRR6046344_AMRSEG0005,NODE_50_length_46701_cov_22.243771,negative,14009-14773,100.0,81.44,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,,, SRR6046344,peregrinum,43304,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR6046344_AMRSEG0006,NODE_55_length_44192_cov_22.018174,positive,21482-22168,100.0,83.84,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,,, SRR6046344,peregrinum,43304,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",SRR6046344_AMRSEG0007,NODE_56_length_43860_cov_28.063931,positive,21690-22393,99.72,81.84,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,,, SRR6046344,peregrinum,43304,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,SRR6046344_AMRSEG0008,NODE_5_length_139259_cov_27.582869,negative,100519-101100,98.47,87.8,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,,, SRR6046344,peregrinum,43304,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR6046344_AMRSEG0009,NODE_78_length_33320_cov_25.195478,positive,1995-5480,98.97,80.06,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,,, SRR6046344,peregrinum,43304,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,SRR6046344_AMRSEG0010,NODE_9_length_110808_cov_24.807847,positive,6826-8311,97.76,80.01,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016/3/31,,,