ID,species_name,species_id,scheme,ST,S14Z,L35,S19,L19,S12,S8,L16,S7,host,source,source_detail,country,date
SRR12451407,phocaicum,319706.0,mycobacteria_2,159,52,51,81,51,88,94,101,104,Environment,Environment: patient environment,Environment:Patient environment:water,France,
SRR12451409,phocaicum,319706.0,mycobacteria_2,159,52,51,81,51,88,94,101,104,Environment,Environment: patient environment,Environment:Patient environment:water,France,
SRR12451412,phocaicum,319706.0,mycobacteria_2,159,52,51,81,51,88,94,101,104,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extraplumonary:catheter,France,
SRR12451414,phocaicum,319706.0,mycobacteria_2,159,52,51,81,51,88,94,101,104,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extraplumonary:catheter,France,
SRR6045352,phocaicum,319706.0,mycobacteria_2,159,52,51,81,51,88,94,101,104,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016-03-31
SRR8483013,phocaicum,319706.0,mycobacteria_2,844,85,50,81,51,88,412,60,319,,,,Portugal,2017-09-01
GCF_001556905.1,phocaicum,319706.0,mycobacteria_2,159,52,51,81,51,88,94,101,104,Environment,Environment: patient environment,Environment:Patient environment:hospital shower hose biofilm,United States of America,2016-02-10
GCF_001557045.1,phocaicum,319706.0,mycobacteria_2,159,52,51,81,51,88,94,101,104,Environment,Environment: patient environment,Environment:Patient environment:hospital shower hose biofilm,United States of America,2016-02-10
GCF_001665375.1,phocaicum,319706.0,mycobacteria_2,204,85,51,81,51,88,95,101,104,,,,Mozambique,2016-06-17
GCF_003851485.1,phocaicum,319706.0,mycobacteria_2,843,85,51,346,51,410,95,101,462,,,,,2018-09-29
GCF_004359045.1,phocaicum,319706.0,mycobacteria_2,844,85,50,81,51,88,412,60,319,,,,,2019-03-20
SRR13827028,phocaicum,319706.0,mycobacteria_2,204,85,51,81,51,88,95,101,104,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,
SRR13827029,phocaicum,319706.0,mycobacteria_2,204,85,51,81,51,88,95,101,104,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,
DRR161218,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,52,51,81,51,88,315,101,319,,,,,
SRR13785998,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,85,51,81,51,88,412,60,104,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2011-03-26
SRR13785999,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,85,51,81,51,88,412,60,104,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2011-03-26
SRR13786000,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,85,51,81,51,88,412,60,104,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2011-03-26
SRR13786053,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,85,51,81,51,410,95,101,462,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,2011-04-15
SRR13786057,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,85,51,81,51,410,95,101,462,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,
SRR13827026,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,85,51,81,51,88,412,60,104,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,
SRR13827027,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,85,51,81,51,410,95,101,462,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,United States of America,
SRR15973855,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,52,51,346,51,88,56,60,104,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extraplumonary:blood,Israel,2019-03-01
SRR6044788,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,52,51,346,51,88,56,101,104,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016-03-31
SRR6044808,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,136,51,151,132,51,88,137,319,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016-03-31
SRR6046100,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,52,51,81,51,410,315,101,319,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016-03-31
SRR6046323,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,85,51,81,51,410,412,101,462,Homo sapiens,Homo sapiens,Homo sapiens:clinical sample,United Kingdom,2016-03-31
GCA_003987785.1,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,52,51,81,51,88,315,101,319,,,,,2018-12-31
GCF_005670655.1,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,52,51,81,51,88,315,101,319,,,,,2019-05-23
GCF_010731115.1,phocaicum,319706.0,mycobacteria_2,Not_pub_mlst,52,51,81,51,88,315,101,319,,,,,2020-02-06