strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name
GCA_000612885.1,porcinum,39693,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCA_000612885.1_AMRSEG0001,CCBG010000001.1,negative,466224-466910,100.0,84.57,,,,,2014/3/31,212.0,,
GCA_000612885.1,porcinum,39693,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCA_000612885.1_AMRSEG0002,CCBG010000001.1,negative,1024611-1028096,98.94,80.92,,,,,2014/3/31,212.0,,
GCA_000612885.1,porcinum,39693,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,GCA_000612885.1_AMRSEG0003,CCBG010000001.1,negative,1129130-1129559,99.54,80.0,,,,,2014/3/31,212.0,,
GCA_000612885.1,porcinum,39693,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,GCA_000612885.1_AMRSEG0004,CCBG010000001.1,positive,1768180-1769685,99.34,81.49,,,,,2014/3/31,212.0,,
GCA_000612885.1,porcinum,39693,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCA_000612885.1_AMRSEG0005,CCBG010000001.1,negative,3314487-3315371,100.0,85.76,,,,,2014/3/31,212.0,,
GCA_000612885.1,porcinum,39693,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCA_000612885.1_AMRSEG0006,CCBG010000002.1,negative,224151-224738,100.0,87.58,,,,,2014/3/31,212.0,,
GCA_000612885.1,porcinum,39693,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",GCA_000612885.1_AMRSEG0007,CCBG010000002.1,negative,489829-490493,94.73,81.95,,,,,2014/3/31,212.0,,
GCA_000612885.1,porcinum,39693,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCA_000612885.1_AMRSEG0008,CCBG010000002.1,negative,1891889-1893125,97.62,82.88,,,,,2014/3/31,212.0,,
GCA_000612885.1,porcinum,39693,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCA_000612885.1_AMRSEG0009,CCBG010000002.1,negative,2040769-2041981,98.54,88.22,,,,,2014/3/31,212.0,,
GCA_000612885.1,porcinum,39693,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCA_000612885.1_AMRSEG0010,CCBG010000002.1,negative,3045449-3045780,96.23,91.87,,,,,2014/3/31,212.0,,
GCF_001686845.1,porcinum,39693,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,GCF_001686845.1_AMRSEG0001,NZ_MBEH01000041.1,positive,89944-91438,98.61,81.48,,,,Uganda,2016/7/15,77.0,,
GCF_001686845.1,porcinum,39693,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCF_001686845.1_AMRSEG0002,NZ_MBEH01000054.1,positive,4458-5342,100.0,85.42,,,,Uganda,2016/7/15,77.0,,
GCF_001686845.1,porcinum,39693,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_001686845.1_AMRSEG0003,NZ_MBEH01000061.1,negative,133287-136772,98.94,80.75,,,,Uganda,2016/7/15,77.0,,
GCF_001686845.1,porcinum,39693,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_001686845.1_AMRSEG0004,NZ_MBEH01000069.1,negative,28224-28910,100.0,84.57,,,,Uganda,2016/7/15,77.0,,
GCF_001686845.1,porcinum,39693,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCF_001686845.1_AMRSEG0005,NZ_MBEH01000078.1,negative,76992-78228,97.7,82.7,,,,Uganda,2016/7/15,77.0,,
GCF_001686845.1,porcinum,39693,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_001686845.1_AMRSEG0006,NZ_MBEH01000091.1,positive,104646-104977,96.23,91.57,,,,Uganda,2016/7/15,77.0,,
GCF_001686845.1,porcinum,39693,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",GCF_001686845.1_AMRSEG0007,NZ_MBEH01000092.1,positive,731-1395,94.73,82.56,,,,Uganda,2016/7/15,77.0,,
GCF_001686845.1,porcinum,39693,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCF_001686845.1_AMRSEG0008,NZ_MBEH01000092.1,positive,97897-98484,100.0,88.95,,,,Uganda,2016/7/15,77.0,,
GCF_001686845.1,porcinum,39693,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCF_001686845.1_AMRSEG0009,NZ_MBEH01000097.1,negative,24680-25916,98.54,86.83,,,,Uganda,2016/7/15,77.0,,
GCF_001722425.1,porcinum,39693,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCF_001722425.1_AMRSEG0001,NZ_MIHF01000001.1,positive,69555-70142,100.0,87.58,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :blood,United States of America,2016/9/9,553.0,,
GCF_001722425.1,porcinum,39693,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",GCF_001722425.1_AMRSEG0002,NZ_MIHF01000011.1,negative,41002-41666,94.73,82.71,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :blood,United States of America,2016/9/9,553.0,,
GCF_001722425.1,porcinum,39693,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,GCF_001722425.1_AMRSEG0003,NZ_MIHF01000038.1,negative,29341-30846,99.41,81.08,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :blood,United States of America,2016/9/9,553.0,,
GCF_001722425.1,porcinum,39693,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_001722425.1_AMRSEG0004,NZ_MIHF01000079.1,negative,19246-22731,99.03,80.7,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :blood,United States of America,2016/9/9,553.0,,
GCF_001722425.1,porcinum,39693,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_001722425.1_AMRSEG0005,NZ_MIHF01000250.1,negative,8095-8426,96.23,91.87,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :blood,United States of America,2016/9/9,553.0,,
GCF_001722425.1,porcinum,39693,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCF_001722425.1_AMRSEG0006,NZ_MIHF01000255.1,positive,4963-6199,98.54,86.75,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :blood,United States of America,2016/9/9,553.0,,
GCF_001722425.1,porcinum,39693,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCF_001722425.1_AMRSEG0007,NZ_MIHF01000384.1,positive,1823-3059,97.7,82.94,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :blood,United States of America,2016/9/9,553.0,,
GCF_001722425.1,porcinum,39693,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_001722425.1_AMRSEG0008,NZ_MIHF01000526.1,negative,876-1562,100.0,84.57,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :blood,United States of America,2016/9/9,553.0,,
GCF_002086835.1,porcinum,39693,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_002086835.1_AMRSEG0001,NZ_MVIG01000001.1,positive,84092-87577,98.94,80.92,,,,,2017/4/11,212.0,,
GCF_002086835.1,porcinum,39693,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_002086835.1_AMRSEG0002,NZ_MVIG01000001.1,positive,645301-645987,100.0,84.57,,,,,2017/4/11,212.0,,
GCF_002086835.1,porcinum,39693,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,GCF_002086835.1_AMRSEG0003,NZ_MVIG01000005.1,negative,9027-9456,99.54,80.0,,,,,2017/4/11,212.0,,
GCF_002086835.1,porcinum,39693,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCF_002086835.1_AMRSEG0004,NZ_MVIG01000006.1,negative,188908-190144,97.62,82.88,,,,,2017/4/11,212.0,,
GCF_002086835.1,porcinum,39693,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCF_002086835.1_AMRSEG0005,NZ_MVIG01000006.1,negative,337788-339000,98.54,88.22,,,,,2017/4/11,212.0,,
GCF_002086835.1,porcinum,39693,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCF_002086835.1_AMRSEG0006,NZ_MVIG01000009.1,negative,199886-200473,100.0,87.58,,,,,2017/4/11,212.0,,
GCF_002086835.1,porcinum,39693,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_002086835.1_AMRSEG0007,NZ_MVIG01000010.1,positive,99895-100226,96.23,91.87,,,,,2017/4/11,212.0,,
GCF_002086835.1,porcinum,39693,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",GCF_002086835.1_AMRSEG0008,NZ_MVIG01000020.1,positive,49390-50054,94.73,81.95,,,,,2017/4/11,212.0,,
GCF_002086835.1,porcinum,39693,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,GCF_002086835.1_AMRSEG0009,NZ_MVIG01000036.1,negative,653-2158,99.34,81.49,,,,,2017/4/11,212.0,,
GCF_002086835.1,porcinum,39693,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCF_002086835.1_AMRSEG0010,NZ_MVIG01000050.1,negative,819-1703,100.0,85.76,,,,,2017/4/11,212.0,,