strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name
ERR5262851,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,ERR5262851_AMRSEG0001,NODE_103_length_16862_cov_243.070064,positive,13233-14825,99.94,85.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,2012/3/14,222.0,,
ERR5262851,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",ERR5262851_AMRSEG0002,NODE_1_length_234399_cov_248.938682,negative,188992-192429,97.13,80.45,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,2012/3/14,222.0,,
ERR5262851,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,ERR5262851_AMRSEG0003,NODE_26_length_76447_cov_239.482824,positive,15044-15589,100.0,82.6,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,2012/3/14,222.0,,
ERR5262851,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,ERR5262851_AMRSEG0004,NODE_68_length_32708_cov_217.500567,positive,1781-2088,89.28,87.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,2012/3/14,222.0,,
ERR5262851,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,ERR5262851_AMRSEG0005,NODE_73_length_30488_cov_241.690353,positive,11345-12031,100.0,90.39,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,2012/3/14,222.0,,
ERR5262854,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,ERR5262854_AMRSEG0001,NODE_100_length_16794_cov_201.665651,positive,13192-14784,99.94,85.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:BAL,Switzerland,2012/5/16,222.0,,
ERR5262854,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,ERR5262854_AMRSEG0002,NODE_26_length_76134_cov_197.629675,positive,14775-15320,100.0,82.6,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:BAL,Switzerland,2012/5/16,222.0,,
ERR5262854,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,ERR5262854_AMRSEG0003,NODE_63_length_32709_cov_176.387092,positive,1781-2088,89.28,87.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:BAL,Switzerland,2012/5/16,222.0,,
ERR5262854,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,ERR5262854_AMRSEG0004,NODE_67_length_30327_cov_198.662371,negative,18458-19144,100.0,90.39,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:BAL,Switzerland,2012/5/16,222.0,,
ERR5262854,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",ERR5262854_AMRSEG0005,NODE_82_length_24037_cov_199.231417,positive,16398-19835,97.13,80.45,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:BAL,Switzerland,2012/5/16,222.0,,
ERR5262957,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,ERR5262957_AMRSEG0001,NODE_101_length_16831_cov_196.564229,negative,2010-3602,99.94,85.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:BAL,Switzerland,2015/8/13,222.0,,
ERR5262957,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",ERR5262957_AMRSEG0002,NODE_1_length_234522_cov_205.207098,negative,189115-192552,97.13,80.45,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:BAL,Switzerland,2015/8/13,222.0,,
ERR5262957,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,ERR5262957_AMRSEG0003,NODE_27_length_75949_cov_196.515774,negative,60483-61028,100.0,82.6,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:BAL,Switzerland,2015/8/13,222.0,,
ERR5262957,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,ERR5262957_AMRSEG0004,NODE_68_length_32708_cov_178.007566,negative,30621-30928,89.28,87.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:BAL,Switzerland,2015/8/13,222.0,,
ERR5262957,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,ERR5262957_AMRSEG0005,NODE_72_length_30327_cov_196.493391,negative,18458-19144,100.0,90.39,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:BAL,Switzerland,2015/8/13,222.0,,
ERR5263011,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,ERR5263011_AMRSEG0001,NODE_104_length_16882_cov_226.723289,positive,13199-14791,99.94,85.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,2015/5/28,222.0,,
ERR5263011,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,ERR5263011_AMRSEG0002,NODE_25_length_76165_cov_221.729232,positive,14843-15388,100.0,82.6,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,2015/5/28,222.0,,
ERR5263011,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,ERR5263011_AMRSEG0003,NODE_64_length_32708_cov_199.170991,negative,30621-30928,89.28,87.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,2015/5/28,222.0,,
ERR5263011,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,ERR5263011_AMRSEG0004,NODE_68_length_30493_cov_220.328689,positive,11350-12036,100.0,90.39,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,2015/5/28,222.0,,
ERR5263011,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",ERR5263011_AMRSEG0005,NODE_85_length_24037_cov_226.988988,negative,4203-7640,97.13,80.45,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,2015/5/28,222.0,,
ERR5263034,pseudokansasii,2341080,catI,ARO:3002683,antibiotic inactivation,Escherichia coli,phenicol antibiotic,catI is a chromosome and transposon-encoded variant of the cat gene found in Escherichia coli and Acinetobacter baumannii.,ERR5263034_AMRSEG0001,NODE_183_length_1057_cov_2.757545,negative,89-747,99.85,99.7,,,,Switzerland,,222.0,,
ERR5263034,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,ERR5263034_AMRSEG0002,NODE_1_length_203515_cov_197.236326,negative,187968-188513,100.0,82.42,,,,Switzerland,,222.0,,
ERR5263034,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",ERR5263034_AMRSEG0003,NODE_40_length_49788_cov_202.110930,negative,4203-7640,97.13,80.45,,,,Switzerland,,222.0,,
GCA_000524055.1,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCA_000524055.1_AMRSEG0001,JANZ01000001.1,negative,27982-28668,100.0,90.54,,,,,2014/1/27,167.0,,
GCA_000524055.1,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCA_000524055.1_AMRSEG0002,JANZ01000001.1,negative,474131-477568,97.13,80.45,,,,,2014/1/27,167.0,,
GCA_000524055.1,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,GCA_000524055.1_AMRSEG0003,JANZ01000001.1,positive,1056924-1057469,100.0,82.6,,,,,2014/1/27,167.0,,
GCA_000524055.1,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,GCA_000524055.1_AMRSEG0004,JANZ01000007.1,negative,251181-252773,99.94,85.63,,,,,2014/1/27,167.0,,
GCA_000524055.1,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCA_000524055.1_AMRSEG0005,JANZ01000011.1,positive,190460-190767,89.28,87.99,,,,,2014/1/27,167.0,,
GCA_001632915.1,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,GCA_001632915.1_AMRSEG0001,LWCJ01000016.1,positive,13060-14652,99.94,85.63,,,,,2016/4/27,222.0,,
GCA_001632915.1,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCA_001632915.1_AMRSEG0002,LWCJ01000022.1,negative,30755-31062,89.28,87.99,,,,,2016/4/27,222.0,,
GCA_001632915.1,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,GCA_001632915.1_AMRSEG0003,LWCJ01000084.1,positive,15738-16283,100.0,82.6,,,,,2016/4/27,222.0,,
GCA_001632915.1,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCA_001632915.1_AMRSEG0004,LWCJ01000140.1,negative,18494-19180,100.0,90.39,,,,,2016/4/27,222.0,,
GCA_001632915.1,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCA_001632915.1_AMRSEG0005,LWCJ01000157.1,positive,16346-19783,97.13,80.45,,,,,2016/4/27,222.0,,
GCF_900566025.1,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,GCF_900566025.1_AMRSEG0001,NZ_UPHN01000012.1,negative,60865-61410,100.0,82.6,,,,,2018/11/1,222.0,,
GCF_900566025.1,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_900566025.1_AMRSEG0002,NZ_UPHN01000023.1,positive,42113-45550,97.13,80.45,,,,,2018/11/1,222.0,,
GCF_900566025.1,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_900566025.1_AMRSEG0003,NZ_UPHN01000028.1,positive,100991-101677,100.0,90.39,,,,,2018/11/1,222.0,,
GCF_900566025.1,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,GCF_900566025.1_AMRSEG0004,NZ_UPHN01000047.1,positive,1398-2990,99.94,85.63,,,,,2018/11/1,222.0,,
GCF_900566025.1,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_900566025.1_AMRSEG0005,NZ_UPHN01000086.1,positive,71469-71776,89.28,87.99,,,,,2018/11/1,222.0,,
GCF_900566045.1,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,GCF_900566045.1_AMRSEG0001,NZ_UPHO01000010.1,negative,60757-61302,100.0,82.6,,,,,2018/11/1,222.0,,
GCF_900566045.1,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_900566045.1_AMRSEG0002,NZ_UPHO01000022.1,positive,42113-45550,97.13,80.45,,,,,2018/11/1,222.0,,
GCF_900566045.1,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_900566045.1_AMRSEG0003,NZ_UPHO01000029.1,positive,11341-12027,100.0,90.39,,,,,2018/11/1,222.0,,
GCF_900566045.1,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,GCF_900566045.1_AMRSEG0004,NZ_UPHO01000052.1,positive,1398-2990,99.94,85.63,,,,,2018/11/1,222.0,,
GCF_900566045.1,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_900566045.1_AMRSEG0005,NZ_UPHO01000092.1,positive,71490-71797,89.28,87.99,,,,,2018/11/1,222.0,,
SRR12599231,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR12599231_AMRSEG0001,NODE_101_length_17410_cov_73.846486,positive,15143-15688,100.0,82.6,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,222.0,,
SRR12599231,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR12599231_AMRSEG0002,NODE_104_length_16529_cov_67.828313,negative,2021-3613,99.94,85.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,222.0,,
SRR12599231,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR12599231_AMRSEG0003,NODE_39_length_49609_cov_73.644209,positive,41970-45407,97.13,80.45,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,222.0,,
SRR12599231,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR12599231_AMRSEG0004,NODE_73_length_31577_cov_69.731738,negative,29747-30054,89.28,87.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,222.0,,
SRR12599231,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR12599231_AMRSEG0005,NODE_74_length_30854_cov_68.263096,negative,18801-19487,100.0,90.54,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,222.0,,
SRR12599312,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR12599312_AMRSEG0001,NODE_125_length_12884_cov_53.706809,positive,9295-10887,99.94,85.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599312,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR12599312_AMRSEG0002,NODE_24_length_66958_cov_53.843561,positive,15723-16268,100.0,82.42,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599312,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR12599312_AMRSEG0003,NODE_46_length_46668_cov_57.678168,negative,44581-44888,89.28,87.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599312,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR12599312_AMRSEG0004,NODE_63_length_36576_cov_57.189138,positive,28937-32374,97.13,80.42,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599312,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR12599312_AMRSEG0005,NODE_75_length_30826_cov_54.068979,positive,11340-12026,100.0,90.54,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599313,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR12599313_AMRSEG0001,NODE_131_length_12879_cov_45.305087,positive,9295-10887,99.94,85.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599313,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR12599313_AMRSEG0002,NODE_22_length_66287_cov_45.815565,negative,50783-51328,100.0,82.42,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599313,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR12599313_AMRSEG0003,NODE_3_length_116353_cov_48.893594,positive,28938-32375,97.13,80.42,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599313,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR12599313_AMRSEG0004,NODE_48_length_46668_cov_47.868233,negative,44581-44888,89.28,87.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599313,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR12599313_AMRSEG0005,NODE_78_length_30881_cov_44.305211,negative,18801-19487,100.0,90.54,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599314,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR12599314_AMRSEG0001,NODE_110_length_16777_cov_42.869570,negative,2006-3598,99.94,85.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,222.0,,
SRR12599314,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR12599314_AMRSEG0002,NODE_20_length_76240_cov_41.707615,negative,60745-61290,100.0,82.6,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,222.0,,
SRR12599314,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR12599314_AMRSEG0003,NODE_37_length_49610_cov_44.427695,positive,41971-45408,97.13,80.45,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,222.0,,
SRR12599314,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR12599314_AMRSEG0004,NODE_62_length_32708_cov_39.785419,negative,30621-30928,89.28,87.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,222.0,,
SRR12599314,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR12599314_AMRSEG0005,NODE_66_length_30488_cov_39.562005,positive,11345-12031,100.0,90.39,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,222.0,,
SRR12599315,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR12599315_AMRSEG0001,NODE_125_length_12939_cov_43.644222,negative,1997-3589,99.94,85.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599315,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR12599315_AMRSEG0002,NODE_24_length_66450_cov_45.077681,positive,15215-15760,100.0,82.42,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599315,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR12599315_AMRSEG0003,NODE_44_length_46668_cov_48.940650,positive,1781-2088,89.28,87.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599315,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR12599315_AMRSEG0004,NODE_60_length_36576_cov_48.466135,negative,4203-7640,97.13,80.42,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599315,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR12599315_AMRSEG0005,NODE_76_length_30831_cov_43.273531,negative,18801-19487,100.0,90.54,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Switzerland,,867.0,,
SRR12599320,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR12599320_AMRSEG0001,NODE_128_length_12996_cov_40.480708,positive,9395-10987,99.94,85.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,,,
SRR12599320,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR12599320_AMRSEG0002,NODE_39_length_49609_cov_42.104812,positive,41970-45407,97.13,80.42,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,,,
SRR12599320,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR12599320_AMRSEG0003,NODE_45_length_43040_cov_48.372502,negative,40953-41260,89.28,87.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,,,
SRR12599320,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR12599320_AMRSEG0004,NODE_66_length_30863_cov_36.873896,negative,23774-24460,100.0,90.54,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,,,
SRR12599320,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR12599320_AMRSEG0005,NODE_94_length_19979_cov_45.923981,negative,4320-4865,100.0,82.6,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,,,
SRR12599323,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR12599323_AMRSEG0001,NODE_107_length_16697_cov_49.836059,negative,2011-3603,99.94,85.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,222.0,,
SRR12599323,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR12599323_AMRSEG0002,NODE_34_length_53621_cov_51.289014,positive,15191-15736,100.0,82.6,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,222.0,,
SRR12599323,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR12599323_AMRSEG0003,NODE_59_length_37997_cov_46.381136,positive,11390-12076,100.0,90.54,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,222.0,,
SRR12599323,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR12599323_AMRSEG0004,NODE_69_length_33159_cov_44.746978,negative,31063-31370,89.28,87.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,222.0,,
SRR12599323,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR12599323_AMRSEG0005,NODE_87_length_23844_cov_46.599765,negative,4203-7640,97.13,80.48,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,222.0,,
SRR12599324,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR12599324_AMRSEG0001,NODE_119_length_12896_cov_40.340840,negative,2010-3602,99.94,85.63,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,867.0,,
SRR12599324,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR12599324_AMRSEG0002,NODE_22_length_66943_cov_41.425359,negative,50691-51236,100.0,82.42,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,867.0,,
SRR12599324,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR12599324_AMRSEG0003,NODE_2_length_221628_cov_43.263020,positive,28938-32375,97.13,80.42,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,867.0,,
SRR12599324,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR12599324_AMRSEG0004,NODE_43_length_46668_cov_44.605064,positive,1781-2088,89.28,87.99,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,867.0,,
SRR12599324,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR12599324_AMRSEG0005,NODE_76_length_30831_cov_36.891738,positive,11345-12031,100.0,90.54,Homo sapiens,Homo sapiens: pulmonary,Homo sapiens:pulmonary:sputum,Australia,,867.0,,
SRR12599348,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR12599348_AMRSEG0001,NODE_123_length_12883_cov_42.566849,negative,1997-3589,99.94,85.63,Environment,Environment: wild environment,Environment:Wild Environment:water,Australia,,867.0,,
SRR12599348,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR12599348_AMRSEG0002,NODE_25_length_66612_cov_45.948158,negative,50858-51403,100.0,82.42,Environment,Environment: wild environment,Environment:Wild Environment:water,Australia,,867.0,,
SRR12599348,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR12599348_AMRSEG0003,NODE_46_length_46668_cov_45.560562,negative,44581-44888,89.28,87.99,Environment,Environment: wild environment,Environment:Wild Environment:water,Australia,,867.0,,
SRR12599348,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR12599348_AMRSEG0004,NODE_64_length_36576_cov_49.792649,positive,28937-32374,97.13,80.42,Environment,Environment: wild environment,Environment:Wild Environment:water,Australia,,867.0,,
SRR12599348,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR12599348_AMRSEG0005,NODE_80_length_30812_cov_43.648997,negative,18801-19487,100.0,90.54,Environment,Environment: wild environment,Environment:Wild Environment:water,Australia,,867.0,,
SRR12599349,pseudokansasii,2341080,efpA,ARO:3003955,antibiotic efflux,Mycobacterium tuberculosis H37Rv,rifamycin antibiotic;isoniazid-like antibiotic,efpA is an MFS transporter found in Mycobacterium tuberculosis.,SRR12599349_AMRSEG0001,NODE_117_length_12913_cov_51.257198,positive,9351-10943,99.94,85.63,Environment,Environment: wild environment,Environment:Wild Environment:water,Australia,,867.0,,
SRR12599349,pseudokansasii,2341080,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR12599349_AMRSEG0002,NODE_1_length_221701_cov_54.371240,positive,28938-32375,97.13,80.42,Environment,Environment: wild environment,Environment:Wild Environment:water,Australia,,867.0,,
SRR12599349,pseudokansasii,2341080,AAC(2')-Ic,ARO:3002525,antibiotic inactivation,Mycobacterium tuberculosis H37Rv,aminoglycoside antibiotic,AAC(2')-Ic is a chromosomal-encoded aminoglycoside acetyltransferase in M. tuberculosis and Mycobacterium tuberculosis variant bovis.,SRR12599349_AMRSEG0003,NODE_25_length_67158_cov_53.277100,positive,15782-16327,100.0,82.42,Environment,Environment: wild environment,Environment:Wild Environment:water,Australia,,867.0,,
SRR12599349,pseudokansasii,2341080,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR12599349_AMRSEG0004,NODE_43_length_46668_cov_51.616479,negative,44581-44888,89.28,87.99,Environment,Environment: wild environment,Environment:Wild Environment:water,Australia,,867.0,,
SRR12599349,pseudokansasii,2341080,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR12599349_AMRSEG0005,NODE_7_length_120097_cov_50.338612,negative,18801-19487,100.0,90.54,Environment,Environment: wild environment,Environment:Wild Environment:water,Australia,,867.0,,