strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name
SRR3617052,salmoniphilum,404941,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR3617052_AMRSEG0001,NODE_11_length_197779_cov_23.528455,positive,12295-12613,92.46,83.07,Environment,Environment: wild environment,Environment:Wild Environment:surface water,Germany,2017/1/1,712.0,,
SRR3617052,salmoniphilum,404941,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR3617052_AMRSEG0002,NODE_1_length_847714_cov_25.205128,positive,138603-142018,97.33,80.37,Environment,Environment: wild environment,Environment:Wild Environment:surface water,Germany,2017/1/1,712.0,,
SRR3617052,salmoniphilum,404941,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR3617052_AMRSEG0003,NODE_1_length_847714_cov_25.205128,positive,445689-446366,98.69,83.78,Environment,Environment: wild environment,Environment:Wild Environment:surface water,Germany,2017/1/1,712.0,,
SRR3617053,salmoniphilum,404941,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,SRR3617053_AMRSEG0001,NODE_1_length_746341_cov_48.422691,negative,242608-243285,98.69,83.92,Environment,Environment: urban environment,Environment:Urban enviroment:Tap water,Germany,2017/1/1,713.0,,
SRR3617053,salmoniphilum,404941,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",SRR3617053_AMRSEG0002,NODE_1_length_746341_cov_48.422691,negative,516611-520026,97.33,80.31,Environment,Environment: urban environment,Environment:Urban enviroment:Tap water,Germany,2017/1/1,713.0,,
SRR3617053,salmoniphilum,404941,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,SRR3617053_AMRSEG0003,NODE_8_length_213181_cov_45.790281,negative,191515-191833,92.46,83.07,Environment,Environment: urban environment,Environment:Urban enviroment:Tap water,Germany,2017/1/1,713.0,,