strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name
GCF_001853625.1,saopaulense,1578165,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_001853625.1_AMRSEG0001,NZ_MLIC01000001.1,positive,441473-444888,97.25,80.8,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :soft tissue,United States of America,2016/10/26,500.0,,
GCF_001853625.1,saopaulense,1578165,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_001853625.1_AMRSEG0002,NZ_MLIC01000001.1,positive,717543-718222,98.98,85.15,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :soft tissue,United States of America,2016/10/26,500.0,,
GCF_001853625.1,saopaulense,1578165,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_001853625.1_AMRSEG0003,NZ_MLIC01000003.1,positive,24129-24460,96.23,82.53,Homo sapiens,Homo sapiens: extrapulmonary,Homo sapiens:extrapulmonary :soft tissue,United States of America,2016/10/26,500.0,,
GCF_001853765.1,saopaulense,1578165,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_001853765.1_AMRSEG0001,NZ_MLIH01000002.1,positive,442481-445896,97.25,80.8,Environment,Environment: urban environment,Environment:Urban environment:aquarium,United States of America,2016/10/26,500.0,,
GCF_001853765.1,saopaulense,1578165,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_001853765.1_AMRSEG0002,NZ_MLIH01000002.1,positive,718551-719230,98.98,85.15,Environment,Environment: urban environment,Environment:Urban environment:aquarium,United States of America,2016/10/26,500.0,,
GCF_001853765.1,saopaulense,1578165,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_001853765.1_AMRSEG0003,NZ_MLIH01000027.1,positive,24129-24460,96.23,82.53,Environment,Environment: urban environment,Environment:Urban environment:aquarium,United States of America,2016/10/26,500.0,,
GCF_002086715.1,saopaulense,1578165,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_002086715.1_AMRSEG0001,NZ_MVII01000002.1,positive,152005-155420,97.25,80.85,,,,,2017/4/11,738.0,,
GCF_002086715.1,saopaulense,1578165,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_002086715.1_AMRSEG0002,NZ_MVII01000003.1,negative,155974-156653,98.98,85.29,,,,,2017/4/11,738.0,,
GCF_002086715.1,saopaulense,1578165,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_002086715.1_AMRSEG0003,NZ_MVII01000027.1,positive,25743-26074,96.23,82.53,,,,,2017/4/11,738.0,,