strain_accession,species_name,species_id,gene_name,card_accession,mechanism,AMR_gene_ref_strain,card_drug_class,definition,amr_seqid,contig,strand,position,coverage,identity,host,source,source_detail,country,date,MLST,subspecies_id,subspecies_name
ERR516495,septicum,98668,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,ERR516495_AMRSEG0001,NODE_11_length_318908_cov_52.270570,negative,196018-196605,100.0,88.27,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/5/27,,,
ERR516495,septicum,98668,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",ERR516495_AMRSEG0002,NODE_11_length_318908_cov_52.270570,negative,315700-316361,94.3,81.27,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/5/27,,,
ERR516495,septicum,98668,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,ERR516495_AMRSEG0003,NODE_13_length_122991_cov_49.803885,positive,83968-84307,98.55,92.35,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/5/27,,,
ERR516495,septicum,98668,Erm(39),ARO:3000602,antibiotic target alteration,Mycolicibacterium fortuitum,streptogramin antibiotic;streptogramin A antibiotic;macrolide antibiotic;lincosamide antibiotic;streptogramin B antibiotic,ErmD confers MLSb phenotype.,ERR516495_AMRSEG0004,NODE_19_length_78286_cov_50.247894,positive,73224-73955,98.79,80.6,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/5/27,,,
ERR516495,septicum,98668,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,ERR516495_AMRSEG0005,NODE_1_length_1379275_cov_51.525320,positive,986433-987938,99.14,81.33,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/5/27,,,
ERR516495,septicum,98668,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,ERR516495_AMRSEG0006,NODE_2_length_627680_cov_50.253706,positive,156109-156993,100.0,86.44,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/5/27,,,
ERR516495,septicum,98668,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",ERR516495_AMRSEG0007,NODE_5_length_531167_cov_50.428615,negative,354459-357841,96.13,80.92,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/5/27,,,
ERR516495,septicum,98668,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,ERR516495_AMRSEG0008,NODE_5_length_531167_cov_50.428615,negative,443077-443503,98.84,81.27,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/5/27,,,
ERR516495,septicum,98668,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,ERR516495_AMRSEG0009,NODE_6_length_447340_cov_49.708120,negative,345432-346118,100.0,84.28,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/5/27,,,
ERR516495,septicum,98668,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,ERR516495_AMRSEG0010,NODE_8_length_377015_cov_50.632118,negative,209496-210732,97.54,81.6,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/5/27,,,
ERR516495,septicum,98668,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",ERR516495_AMRSEG0011,NODE_8_length_377015_cov_50.632118,negative,371524-372736,98.54,90.36,Homo sapiens,Homo sapiens,Homo sapiens_no_further_detail,,2014/5/27,,,
GCF_000455325.1,septicum,98668,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,GCF_000455325.1_AMRSEG0002,NZ_HG322951.1,positive,1707873-1708302,99.54,81.16,,,,,2013/8/20,110.0,,
GCF_000455325.1,septicum,98668,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_000455325.1_AMRSEG0003,NZ_HG322951.1,positive,1806509-1809891,96.02,80.94,,,,,2013/8/20,110.0,,
GCF_000455325.1,septicum,98668,Erm(39),ARO:3000602,antibiotic target alteration,Mycolicibacterium fortuitum,streptogramin antibiotic;streptogramin A antibiotic;macrolide antibiotic;lincosamide antibiotic;streptogramin B antibiotic,ErmD confers MLSb phenotype.,GCF_000455325.1_AMRSEG0004,NZ_HG322951.1,negative,2111635-2112375,99.87,81.54,,,,,2013/8/20,110.0,,
GCF_000455325.1,septicum,98668,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_000455325.1_AMRSEG0005,NZ_HG322951.1,positive,2291191-2291877,100.0,84.13,,,,,2013/8/20,110.0,,
GCF_000455325.1,septicum,98668,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCF_000455325.1_AMRSEG0006,NZ_HG322951.1,positive,3085517-3086401,100.0,86.33,,,,,2013/8/20,110.0,,
GCF_000455325.1,septicum,98668,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCF_000455325.1_AMRSEG0007,NZ_HG322952.1,positive,114901-116113,98.54,90.44,,,,,2013/8/20,110.0,,
GCF_000455325.1,septicum,98668,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCF_000455325.1_AMRSEG0008,NZ_HG322952.1,positive,264974-266210,97.54,82.49,,,,,2013/8/20,110.0,,
GCF_000455325.1,septicum,98668,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,GCF_000455325.1_AMRSEG0009,NZ_HG322952.1,positive,1356183-1357688,99.08,81.87,,,,,2013/8/20,110.0,,
GCF_000455325.1,septicum,98668,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_000455325.1_AMRSEG0010,NZ_HG322953.1,negative,880161-880500,98.55,91.77,,,,,2013/8/20,110.0,,
GCF_016919325.1,septicum,98668,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCF_016919325.1_AMRSEG0001,NZ_CP070348.1,positive,114303-115515,98.54,90.11,,,,,2021/2/23,,,
GCF_016919325.1,septicum,98668,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCF_016919325.1_AMRSEG0002,NZ_CP070348.1,positive,262824-264060,97.54,81.52,,,,,2021/2/23,,,
GCF_016919325.1,septicum,98668,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,GCF_016919325.1_AMRSEG0003,NZ_CP070348.1,positive,1414200-1415705,99.34,81.95,,,,,2021/2/23,,,
GCF_016919325.1,septicum,98668,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCF_016919325.1_AMRSEG0004,NZ_CP070348.1,negative,2413932-2414522,100.0,86.63,,,,,2021/2/23,,,
GCF_016919325.1,septicum,98668,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,GCF_016919325.1_AMRSEG0005,NZ_CP070348.1,positive,3421765-3422194,99.54,81.39,,,,,2021/2/23,,,
GCF_016919325.1,septicum,98668,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_016919325.1_AMRSEG0006,NZ_CP070348.1,positive,3517336-3520718,96.02,80.83,,,,,2021/2/23,,,
GCF_016919325.1,septicum,98668,Erm(39),ARO:3000602,antibiotic target alteration,Mycolicibacterium fortuitum,streptogramin antibiotic;streptogramin A antibiotic;macrolide antibiotic;lincosamide antibiotic;streptogramin B antibiotic,ErmD confers MLSb phenotype.,GCF_016919325.1_AMRSEG0007,NZ_CP070348.1,negative,3895843-3896583,100.0,80.57,,,,,2021/2/23,,,
GCF_016919325.1,septicum,98668,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_016919325.1_AMRSEG0008,NZ_CP070348.1,positive,4217294-4217980,100.0,84.28,,,,,2021/2/23,,,
GCF_016919325.1,septicum,98668,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCF_016919325.1_AMRSEG0009,NZ_CP070348.1,positive,4976460-4977347,100.0,86.49,,,,,2021/2/23,,,
GCF_016919325.1,septicum,98668,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_016919325.1_AMRSEG0010,NZ_CP070348.1,positive,6208995-6209334,98.55,91.47,,,,,2021/2/23,,,
GCF_016919345.1,septicum,98668,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,GCF_016919345.1_AMRSEG0001,NZ_CP070349.1,positive,544914-546419,99.08,81.73,,,,,2021/2/23,,,
GCF_016919345.1,septicum,98668,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCF_016919345.1_AMRSEG0002,NZ_CP070349.1,negative,1520191-1520781,100.0,87.65,,,,,2021/2/23,,,
GCF_016919345.1,septicum,98668,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,GCF_016919345.1_AMRSEG0003,NZ_CP070349.1,positive,2314074-2314503,99.54,80.7,,,,,2021/2/23,,,
GCF_016919345.1,septicum,98668,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_016919345.1_AMRSEG0004,NZ_CP070349.1,positive,2470409-2473791,96.02,81.06,,,,,2021/2/23,,,
GCF_016919345.1,septicum,98668,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_016919345.1_AMRSEG0005,NZ_CP070349.1,positive,2938519-2939205,100.0,83.99,,,,,2021/2/23,,,
GCF_016919345.1,septicum,98668,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCF_016919345.1_AMRSEG0006,NZ_CP070349.1,positive,3615907-3616791,100.0,86.1,,,,,2021/2/23,,,
GCF_016919345.1,septicum,98668,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_016919345.1_AMRSEG0007,NZ_CP070349.1,positive,4762136-4762475,98.55,92.06,,,,,2021/2/23,,,
GCF_016919345.1,septicum,98668,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCF_016919345.1_AMRSEG0008,NZ_CP070349.1,positive,5754731-5755943,98.54,90.36,,,,,2021/2/23,,,
GCF_016919345.1,septicum,98668,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCF_016919345.1_AMRSEG0009,NZ_CP070349.1,positive,5910564-5911800,97.54,81.68,,,,,2021/2/23,,,
GCF_017052695.1,septicum,98668,blaF,ARO:3003562,antibiotic inactivation,Mycolicibacterium fortuitum,penam,Class A beta-lactamase found in Mycolicibacterium fortuitum.,GCF_017052695.1_AMRSEG0001,NZ_JAFIDD010000001.1,positive,486904-487788,100.0,86.55,,,,,2021/2/27,862.0,,
GCF_017052695.1,septicum,98668,RbpA,ARO:3000245,antibiotic target protection,Mycolicibacterium smegmatis MC2 155,rifamycin antibiotic,RNA-polymerase binding protein which confers resistance to rifampin.,GCF_017052695.1_AMRSEG0002,NZ_JAFIDD010000001.1,positive,1782208-1782547,98.55,91.18,,,,,2021/2/27,862.0,,
GCF_017052695.1,septicum,98668,tap,ARO:3000343,antibiotic efflux,Mycolicibacterium fortuitum,tetracycline antibiotic,"Efflux pump proteins contained within Mycobacterial genomes which confer resistance to a number of different antibiotics including aminoglycosides, and tetracyclines.",GCF_017052695.1_AMRSEG0003,NZ_JAFIDD010000001.1,positive,2794028-2795240,98.54,90.11,,,,,2021/2/27,862.0,,
GCF_017052695.1,septicum,98668,tet(V),ARO:3000181,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,tetracycline antibiotic,TetV is a tetracycline efflux protein that has been found in Mycolicibacterium smegmatis and Mycolicibacterium fortuitum.,GCF_017052695.1_AMRSEG0004,NZ_JAFIDD010000001.1,positive,2950075-2951311,97.54,81.6,,,,,2021/2/27,862.0,,
GCF_017052695.1,septicum,98668,lfrA,ARO:3003967,antibiotic efflux,Mycolicibacterium smegmatis MC2 155,fluoroquinolone antibiotic,lfrA is involved in the active efflux of quinolones and is found in Mycobacteroides abscessus.,GCF_017052695.1_AMRSEG0005,NZ_JAFIDD010000001.1,positive,4016002-4017507,99.41,81.28,,,,,2021/2/27,862.0,,
GCF_017052695.1,septicum,98668,AAC(2')-Ib,ARO:3002524,antibiotic inactivation,Mycolicibacterium fortuitum,aminoglycoside antibiotic,AAC(2')-Ib is a chromosomal-encoded aminoglycoside acetyltransferase in Mycolicibacterium fortuitum and A. baumannii.,GCF_017052695.1_AMRSEG0006,NZ_JAFIDD010000001.1,negative,5109098-5109688,100.0,86.63,,,,,2021/2/27,862.0,,
GCF_017052695.1,septicum,98668,vanR_in_vanO_cl,ARO:3002930,antibiotic target alteration,Rhodococcus hoagii,glycopeptide antibiotic,"Also known as vanRO, is a vanR variant found in the vanO gene cluster.",GCF_017052695.1_AMRSEG0007,NZ_JAFIDD010000001.1,negative,5232516-5233177,94.3,82.48,,,,,2021/2/27,862.0,,
GCF_017052695.1,septicum,98668,arr-1,ARO:3002846,antibiotic inactivation,Mycolicibacterium smegmatis,rifamycin antibiotic,arr-1 is a chromosome-encoded ribosyltransferase found in Mycolicibacterium smegmatis.,GCF_017052695.1_AMRSEG0008,NZ_JAFIDD010000002.1,positive,348845-349274,99.54,80.93,,,,,2021/2/27,862.0,,
GCF_017052695.1,septicum,98668,rpoB2,ARO:3000501,antibiotic target alteration,Nocardia farcinica IFM 10152,rifamycin antibiotic,"Due to gene duplication, the genomes of Nocardia species include both rifampin-sensitive beta-subunit of RNA polymerase (rpoB) and rifampin-resistant beta-subunit of RNA polymerase (rpoB2) genes, with ~88% similarity between the two gene products. Expression of the rpoB2 variant results in replacement of rifampin sensitivity with rifampin resistance.",GCF_017052695.1_AMRSEG0009,NZ_JAFIDD010000002.1,positive,434741-438123,96.02,80.91,,,,,2021/2/27,862.0,,
GCF_017052695.1,septicum,98668,Erm(39),ARO:3000602,antibiotic target alteration,Mycolicibacterium fortuitum,streptogramin antibiotic;streptogramin A antibiotic;macrolide antibiotic;lincosamide antibiotic;streptogramin B antibiotic,ErmD confers MLSb phenotype.,GCF_017052695.1_AMRSEG0010,NZ_JAFIDD010000002.1,negative,783583-784323,100.0,80.57,,,,,2021/2/27,862.0,,
GCF_017052695.1,septicum,98668,mtrA,ARO:3000816,antibiotic efflux,Mycobacterium tuberculosis H37Rv,penam;macrolide antibiotic,MtrA is a transcriptional activator of the MtrCDE multidrug efflux pump of Neisseria gonorrhoeae.,GCF_017052695.1_AMRSEG0011,NZ_JAFIDD010000002.1,positive,951645-952331,100.0,84.28,,,,,2021/2/27,862.0,,