| Title | Transcriptome data of metastatic colorectal cancer |
|---|---|
| Description | Bulk RNA derived from 50 pre-treatment tumor tissue samples were extracted and sequencing on Illumina Novaseq 6000 with paired end 150bp mode. Raw sequencing reads were preprocessed by FASTQC v0.12.6. for subsequent analysis, and then filtered reads were aligned to hg19 reference genome using STAR (version 020201) and further assembled using StringTie2 (version 2.2.1). Gene-expression profiles were compared to elucidate potential transcriptional signatures that are associated with chemotherapy response and progression-free survival. The raw count matrix was provided as-is. |
| Organism | Homo sapiens |
| Data Type | Expression Profiling |
| Data Accessibility | Controlled-access |
| BioProject | PRJCA016356 |
| Release Date | 2026-04-17 |
| Submitter | Yuanzhe Zhang (zhangyzh26@mail2.sysu.edu.cn) |
| Organization | The Sixth Affiliated Hospital, Sun Yat-sen University |
| Submission Date | 2023-04-18 |
The data cannot be downloaded as it has not yet been registered in the Human Genetic Resource Management Platform of MOST.
| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download |
|---|---|---|---|---|---|---|
| OMIX003785-01 | Raw Counts | 50 | Expression Profiling | 3.7 MB | csv | Unavailable |
| OMIX003785-02 | TPM values | 50 | Expression Profiling | 8.2 MB | csv | Unavailable |
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