Simulated conformation ensembles for chromatin of IMR90 from ATAC-seq data
| Title | Simulated conformation ensembles for chromatin of IMR90 from ATAC-seq data |
|---|---|
| Description | In our work, we develop a polymer-physics-based hypothesis-driven model, noted as our stochastic folding model. This model predicts the conformation ensemble of a chromatin region of interest by using only the population-averaged chromatin accessibility data as input. We use stochastic folding model to construct the conformation ensemble for chromatins in IMR90 cells. The chromatin region includes 22 autosomes and an X-chromosome. The conformation ensemble for such region is generated using the ATAC-seq data(ATAC-seq data is downloaded from Gene Expression Omnibus (GEO) repository with accession code GSE169767) |
| Organism | Homo sapiens |
| Data Type | Other Type of Genomic Data |
| Data Accessibility | Open-access |
| BioProject | PRJCA017011 |
| Release Date | 2024-02-27 |
| Submitter | Luming MENG (menglum@scau.edu.cn) |
| Organization | South China Agricultural University |
| Submission Date | 2023-05-15 |
The data cannot be downloaded as it has not yet been registered in the Human Genetic Resource Management Platform of MOST.
| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download Times | Download |
|---|---|---|---|---|---|---|---|
| OMIX004064-01 | Simulated conformation ensembles for chromatin of IMR90 from ATAC-seq data | 1 | Other Type of Genomic Data | 1.84 GB | tar | 0 | Unavailable |